Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

11299844 .. 11304254

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

ATGAACACCGTTTTCCACCCCACCATCGCCGCCTTATCTCCTCCTCCTCCTCCGCTCTCTCACTACCCTCCCAAACCCCCACCACCACCACCACCATCACCACCACACTCCTCTCTTTCTCTCTCTCCTTCCAAACCCAAACCCAAAACCCCCCTCACCTTCTCCACCTCTCTCCCTCTCCAACCCCTCTTCGCTACTCCCAATCCCAATCCCAATCCTCCTTCTCTCTTCTCCCATTTGCTCTCTCTCCTCCGCCTCTCCGCTCGCCACGCCGACGCCGACCTCGCCAGGGCCGTCCACGCCTCCGCTCTCAAGCTCGAAAGCGACACCCATCTCGGCAATGCTCTCGTCTCCGCCTATCTCAAGCTGGGCCTTGTTCCCCAAGCTTACCGCGTTTTCCAGAGCCTCCCGTCCCCCAATGTCGTCTCCTTCACCGCCATGGTTTCCGGTTTCGCCAAGTCCGGCCGGGAACAACAGGCGGCGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAATGAGTACAGCTTTGTAGCAATGTTGACTGCTTGTATTCGAGTTTTCGACCTCGAATTGGGTCAGCAAGTTCACGGTTTGGCGGTTAAGATGGGGTACTTGGACCGTGCTTTTGTTTCGAATGCGGTGATGGGTTTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGCTGTTTGATGAAATGCCTCATAATAGAGACATTGCGTCGTGGAATACTGTTATGGCGGGTTTAGTGAGTGAGGGTATGTATGATGAAGTGTTTGATTTGTTGCGTCAACTGTTGCGGAGTGAGGGGTGTGTTGCGGACAATATCACGCTTTCGACTGTGTTGACTGCTTGTACGGGGAGTAATGCGTACTTGGAGGGACAAGGAGTTCATGCCTATGCTGTCAAGAATGGTTTGGAGGGGGATTTGAGTGTTGGCAATGCGCTTATTGGGTTGTATGGGGAGTGTGGGAGTGTGGGAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGCAAGGGATGCTATTACTTGGACGGAGATGATTACTGCCTACATGGGTTTCGGGATGGTGGAGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTCTTATTCTTATAATGCTCTGATTGCGGGCTTTTGTCGAAATGGTGAAGGCTTGAGGGCGCTGGATTTATTTATGAAAATGATGGAGGAGGGTGTGGAGCTGACAGAATTCACTTTGAGTAGTGTTGTTGGTGCTTGTGGCTTGCTTATGGACTGCAAAAGTAGTGAGCAAATTCATGGGTTTGTCATCAAGTTTGGTTTTGATTCAAATGTTTGTATTGGAGCTGCGTTGCTTGATATGTGCACAAGGTGTGGCCGAATGGGAGATGCCATGAAATTGTTCCACCAGTGGCCAACTGAGCAGGAAAAATCTGTAATTTTGACATCAATTATATGTGGGTATGCTCGAAATGGGCAACTGGATGAGGCAATATCTATTTTCGACCGATATCAATCAGAAGGGACAATGGTAATGGATGAAGTTGCTTCAACTTCACTCCTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCATATGCTGTCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACAATCAGCATGTACACCAAGTGCTGGAACATGGATGAGGGAATCAAAATATTTGGTATGATGCGCACTCACGACATAGTTTCATGGAATGTTTTGTTGGCTGGTTATCTCCTGCATAGACGAGGTGATGAGGCCTTAGCTGTCTGGTCGAAGATGGAGAAGACTGGCATAAAACCAGACAAGATTACCTTTATTTTGATCATTTCAGCACACAGGCATACAAACTCCAGTTCTGTTGATAATTGTAGAAGTTTATTTCTCTCCATGAAAGCAGTTTATGACATTGATCCCACCCCAGAGCACTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTAAGCCTGAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCCGAATGAATACAGCTGTTGGTAAAAGGGTTGTGAAACGTATACTAGCGATGGAGCCCAAAGATCCATCTAGCTACATACTTTTATCAAATCTGTATTCAGCATGTGGGAGATGGGATTGCTCTGAAATGGTGAGAGATGACATGAGAAAGAGGGGGTTTAGGAAGCACCCAGGTCGAAGTTGGTTCATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCACATCCCCAAGTAAAAGACATATATAGTGCATTGGAAATACTAATTGTAGAATGCATGAAGGCCGGTTACATTCCAGACACAAGCTTTGTTCTTCATGAAGTAGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTGGCAGCCACCTATGGGCTTCTGACCAACAAACCAGGAAAACCCATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATACTTTCTTGAAGTACTTGTCCATTGTTGCCAAGAGAGCAATACATGTAAGAGATGCTTCAGGATTTCACTATTTTTCAAACGGCCAGTGCTCGTGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

890

Amino Acids

98.59

Weight (kDa)

6.98

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	139 - 187	9.5e-12	PPR repeat family
PPR_3	PF13812	139 - 186	3.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	142 - 172	3.7e-06	PPR repeat
PPR_2	PF13041	242 - 289	1.2e-06	PPR repeat family
PPR_2	PF13041	375 - 421	6.2e-10	PPR repeat family
PPR	PF01535	377 - 407	1.4e-07	PPR repeat
PPR_2	PF13041	580 - 625	6.6e-11	PPR repeat family
E_motif	PF20431	704 - 759	2.3e-14	E motif
DYW_deaminase	PF14432	797 - 888	2e-32	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
Acc16I	TGCGCA	1 cut(s)	1730
AccB7I	CCANNNNNTGG	1 cut(s)	1689
AccBSI	CCGCTC	3 cut(s)	55, 263, 308
AccI	GTMKAC	1 cut(s)	2134
AccII	CGCG	1 cut(s)	393
AclWI	GGATC	2 cut(s)	1946, 2150
AcoI	YGGCCR	4 cut(s)	463, 1378, 1415, 2641
AcsI	RAATTY	3 cut(s)	1123, 1232, 1296
AcuI	CTGAAG	2 cut(s)	2073, 2601
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	2 cut(s)	1374, 1686
AfaI	GTAC	8 cut(s)	530, 620, 868, 884, 1679, 1997, 2456, 2573
AfiI	CCNNNNNNNGG	4 cut(s)	289, 580, 1689, 2487
AflII	CTTAAG	1 cut(s)	692
AflIII	ACRYGT	1 cut(s)	2602
AgsI	TTSAA	4 cut(s)	1332, 1554, 2569, 2637
AhdI	GACNNNNNGTC	1 cut(s)	730
AjnI	CCWGG	3 cut(s)	287, 2263, 2506
AjuI	GAANNNNNNNTTGG	2 cut(s)	1745, 1777
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
Alw21I	GWGCWC	3 cut(s)	1370, 1968, 2651
Alw26I	GTCTC	4 cut(s)	355, 430, 717, 2544
Alw44I	GTGCAC	1 cut(s)	1366
AlwI	GGATC	2 cut(s)	1946, 2150
AoxI	GGCC	8 cut(s)	291, 370, 463, 1378, 1415, 1797, 2385, 2641
ApaLI	GTGCAC	1 cut(s)	1366
ApeKI	GCWGC	3 cut(s)	1001, 1349, 2477
ApoI	RAATTY	3 cut(s)	1123, 1232, 1296
ArsI	GACNNNNNNTTYG	4 cut(s)	617, 649, 2393, 2425
Asp700I	GAANNNNTTC	2 cut(s)	1403, 2447
AspLEI	GCGC	4 cut(s)	691, 958, 1186, 1731
AspS9I	GGNCC	3 cut(s)	291, 370, 625
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	7 cut(s)	90, 148, 424, 661, 1181, 1802, 2236
AsuII	TTCGAA	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	1370
BaeI	ACNNNNGTAYC	2 cut(s)	1987, 2020
BalI	TGGCCA	1 cut(s)	1417
BanII	GRGCYC	1 cut(s)	2151
BarI	GAAGNNNNNNTAC	2 cut(s)	2375, 2407
BauI	CACGAG	1 cut(s)	2650
BbsI	GAAGAC	1 cut(s)	1832
Bbv12I	GWGCWC	3 cut(s)	1370, 1968, 2651
BbvI	GCAGC	3 cut(s)	988, 1336, 2489
BceAI	ACGGC	2 cut(s)	278, 2656
BcgI	CGANNNNNNTGC	4 cut(s)	328, 362, 2249, 2283
BciT130I	CCWGG	3 cut(s)	289, 2265, 2508
BciVI	GTATCC	1 cut(s)	2017
BclI	TGATCA	2 cut(s)	1105, 1863
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	4 cut(s)	355, 430, 717, 2544
BfaI	CTAG	3 cut(s)	1640, 2138, 2163
BfmI	CTRYAG	3 cut(s)	493, 1581, 2086
BfoI	RGCGCY	1 cut(s)	1187
BfrI	CTTAAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	2017
BisI	GCNGC	5 cut(s)	30, 480, 1002, 1350, 2478
BlsI	GCNGC	5 cut(s)	31, 481, 1003, 1351, 2479
BmcAI	AGTACT	1 cut(s)	2573
Bme1390I	CCNGG	4 cut(s)	289, 467, 2265, 2508
Bme18I	GGWCC	1 cut(s)	625
BmeRI	GACNNNNNGTC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	291, 370, 625
BmiI	GGNNCC	1 cut(s)	2148
BmrFI	CCNGG	4 cut(s)	289, 467, 2265, 2508
BmrI	ACTGGG	2 cut(s)	1607, 2008
BmsI	GCATC	8 cut(s)	1008, 1021, 1101, 1381, 1716, 2028, 2443, 2602
BmuI	ACTGGG	2 cut(s)	1607, 2008
BpiI	GAAGAC	1 cut(s)	1832
BpmI	CTGGAG	1 cut(s)	1876
Bpu10I	CCTNAGC	1 cut(s)	1801
Bpu14I	TTCGAA	1 cut(s)	641
BpuEI	CTTGAG	3 cut(s)	296, 347, 1198
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	1516
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	288, 438, 1564, 2263
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 580, 1689, 2487
Bse118I	RCCGGY	1 cut(s)	2387
Bse1I	ACTGG	9 cut(s)	1411, 1488, 1602, 1834, 1893, 2003, 2478, 2644, 2669
Bse3DI	GCAATG	4 cut(s)	346, 549, 726, 958
Bse8I	GATNNNNATC	1 cut(s)	1516
BseBI	CCWGG	3 cut(s)	289, 2265, 2508
BseDI	CCNNGG	4 cut(s)	288, 438, 1564, 2263
BseJI	GATNNNNATC	1 cut(s)	1516
BseLI	CCNNNNNNNGG	4 cut(s)	289, 580, 1689, 2487
BseMI	GCAATG	4 cut(s)	346, 549, 726, 958
BseMII	CTCAG	1 cut(s)	1413
BseNI	ACTGG	9 cut(s)	1411, 1488, 1602, 1834, 1893, 2003, 2478, 2644, 2669
BseRI	GAGGAG	8 cut(s)	30, 33, 36, 39, 100, 239, 517, 1226
BseSI	GKGCMC	1 cut(s)	1370
BseX3I	CGGCCG	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	988, 1336, 2489
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	2 cut(s)	466, 1510
BshFI	GGCC	8 cut(s)	293, 372, 465, 1380, 1417, 1799, 2387, 2643
BsiEI	CGRYCG	2 cut(s)	466, 1510
BsiHKAI	GWGCWC	3 cut(s)	1370, 1968, 2651
BsiSI	CCGG	4 cut(s)	447, 462, 466, 2388
BslFI	GGGAC	3 cut(s)	397, 906, 1540
BslI	CCNNNNNNNGG	4 cut(s)	289, 580, 1689, 2487
BsmAI	GTCTC	4 cut(s)	355, 430, 717, 2544
BsmBI	CGTCTC	2 cut(s)	355, 430
BsmFI	GGGAC	3 cut(s)	397, 906, 1540
BsmI	GAATGC	2 cut(s)	649, 2381
BsnI	GGCC	8 cut(s)	293, 372, 465, 1380, 1417, 1799, 2387, 2643
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	4 cut(s)	1370, 1968, 2151, 2651
Bsp1407I	TGTACA	1 cut(s)	1677
Bsp143I	GATC	4 cut(s)	1105, 1863, 1951, 2155
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	8 cut(s)	293, 372, 465, 1380, 1417, 1799, 2387, 2643
BspCNI	CTCAG	1 cut(s)	1414
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	2 cut(s)	1591, 2419
BspLI	GGNNCC	1 cut(s)	2148
BspPI	GGATC	2 cut(s)	1946, 2150
BspQI	GCTCTTC	1 cut(s)	2424
BspT104I	TTCGAA	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	692
BsrBI	CCGCTC	3 cut(s)	55, 263, 308
BsrDI	GCAATG	4 cut(s)	346, 549, 726, 958
BsrFI	RCCGGY	1 cut(s)	2387
BsrGI	TGTACA	1 cut(s)	1677
BsrI	ACTGG	9 cut(s)	1411, 1488, 1602, 1834, 1893, 2003, 2478, 2644, 2669
BssAI	RCCGGY	1 cut(s)	2387
BssECI	CCNNGG	4 cut(s)	288, 438, 1564, 2263
BssMI	GATC	4 cut(s)	1105, 1863, 1951, 2155
BssNAI	GTATAC	1 cut(s)	2135
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	2650
BssT1I	CCWWGG	2 cut(s)	438, 1564
Bst1107I	GTATAC	1 cut(s)	2135
Bst2BI	CACGAG	1 cut(s)	2650
Bst2UI	CCWGG	3 cut(s)	289, 2265, 2508
Bst4CI	ACNGT	7 cut(s)	10, 599, 629, 745, 807, 853, 2465
Bst6I	CTCTTC	3 cut(s)	194, 233, 2424
BstACI	GRCGYC	1 cut(s)	276
BstAFI	CTTAAG	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstAUI	TGTACA	1 cut(s)	1677
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	5 cut(s)	265, 1023, 1153, 1268, 2070
BstDEI	CTNAG	2 cut(s)	1422, 1801
BstDSI	CCRYGG	1 cut(s)	438
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	1187
BstHHI	GCGC	4 cut(s)	691, 958, 1186, 1731
BstKTI	GATC	4 cut(s)	1108, 1866, 1954, 2158
BstMAI	GTCTC	4 cut(s)	355, 430, 717, 2544
BstMBI	GATC	4 cut(s)	1105, 1863, 1951, 2155
BstMCI	CGRYCG	2 cut(s)	466, 1510
BstNI	CCWGG	3 cut(s)	289, 2265, 2508
BstNSI	RCATGY	3 cut(s)	1678, 2199, 2606
BstSCI	CCNGG	4 cut(s)	287, 465, 2263, 2506
BstSFI	CTRYAG	3 cut(s)	493, 1581, 2086
BstSLI	GKGCMC	1 cut(s)	1370
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	988, 1336, 2489
BstV2I	GAAGAC	1 cut(s)	1832
BstX2I	RGATCY	1 cut(s)	2155
BstYI	RGATCY	1 cut(s)	2155
BstZ17I	GTATAC	1 cut(s)	2135
BstZI	CGGCCG	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	2017
BsuRI	GGCC	8 cut(s)	293, 372, 465, 1380, 1417, 1799, 2387, 2643
BtgI	CCRYGG	1 cut(s)	438
BtgZI	GCGATG	2 cut(s)	10, 2156
BtsIMutI	CAGTG	3 cut(s)	1418, 2470, 2651
Cac8I	GCNNGC	5 cut(s)	265, 1023, 1153, 1268, 2070
CciI	TCATGA	2 cut(s)	1591, 2419
CfoI	GCGC	4 cut(s)	691, 958, 1186, 1731
Cfr10I	RCCGGY	1 cut(s)	2387
Cfr13I	GGNCC	3 cut(s)	291, 370, 625
CseI	GACGC	3 cut(s)	284, 720, 788
Csp6I	GTAC	8 cut(s)	529, 619, 867, 883, 1678, 1996, 2455, 2572
CviQI	GTAC	8 cut(s)	529, 619, 867, 883, 1678, 1996, 2455, 2572
DdeI	CTNAG	2 cut(s)	1422, 1801
DpnI	GATC	4 cut(s)	1107, 1865, 1953, 2157
DpnII	GATC	4 cut(s)	1105, 1863, 1951, 2155
DraIII	CACNNNGTG	2 cut(s)	1374, 1686
DriI	GACNNNNNGTC	1 cut(s)	730
EaeI	YGGCCR	4 cut(s)	463, 1378, 1415, 2641
EagI	CGGCCG	1 cut(s)	463
Eam1104I	CTCTTC	3 cut(s)	194, 233, 2424
Eam1105I	GACNNNNNGTC	1 cut(s)	730
EarI	CTCTTC	3 cut(s)	194, 233, 2424
EciI	GGCGGA	3 cut(s)	242, 343, 497
EclXI	CGGCCG	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	438, 1564
Eco147I	AGGCCT	1 cut(s)	1799
Eco24I	GRGCYC	1 cut(s)	2151
Eco32I	GATATC	1 cut(s)	1514
Eco47I	GGWCC	1 cut(s)	625
Eco52I	CGGCCG	1 cut(s)	463
Eco57I	CTGAAG	2 cut(s)	2073, 2601
EcoRI	GAATTC	2 cut(s)	1123, 1232
EcoRII	CCWGG	3 cut(s)	287, 2263, 2506
EcoRV	GATATC	1 cut(s)	1514
EcoT14I	CCWWGG	2 cut(s)	438, 1564
EcoT22I	ATGCAT	1 cut(s)	2381
EcoT38I	GRGCYC	1 cut(s)	2151
ErhI	CCWWGG	2 cut(s)	438, 1564
Esp3I	CGTCTC	2 cut(s)	355, 430
FalI	AAGNNNNNCTT	8 cut(s)	1838, 1870, 2027, 2059, 2435, 2467, 2599, 2631
FaqI	GGGAC	3 cut(s)	397, 906, 1540
FauI	CCCGC	2 cut(s)	745, 1144
FauNDI	CATATG	1 cut(s)	1618
FbaI	TGATCA	2 cut(s)	1105, 1863
FblI	GTMKAC	1 cut(s)	2134
Fnu4HI	GCNGC	5 cut(s)	30, 480, 1002, 1350, 2478
FriOI	GRGCYC	1 cut(s)	2151
Fsp4HI	GCNGC	5 cut(s)	30, 480, 1002, 1350, 2478
FspAI	RTGCGCAY	1 cut(s)	1730
FspBI	CTAG	3 cut(s)	1640, 2138, 2163
FspI	TGCGCA	1 cut(s)	1730
GlaI	GCGC	4 cut(s)	690, 957, 1185, 1730
GluI	GCNGC	5 cut(s)	30, 480, 1002, 1350, 2478
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	1876
HaeII	RGCGCY	1 cut(s)	1187
HaeIII	GGCC	8 cut(s)	293, 372, 465, 1380, 1417, 1799, 2387, 2643
HapII	CCGG	4 cut(s)	447, 462, 466, 2388
HgaI	GACGC	3 cut(s)	284, 720, 788
HhaI	GCGC	4 cut(s)	691, 958, 1186, 1731
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	4 cut(s)	689, 956, 1184, 1729
HinP1I	GCGC	4 cut(s)	689, 956, 1184, 1729
HincII	GTYRAC	3 cut(s)	549, 803, 858
HindII	GTYRAC	3 cut(s)	549, 803, 858
HindIII	AAGCTT	2 cut(s)	384, 2407
HinfI	GANTC	3 cut(s)	1328, 1707, 2091
HpaII	CCGG	4 cut(s)	447, 462, 466, 2388
HphI	GGTGA	7 cut(s)	90, 148, 424, 661, 1181, 1802, 2236
Hpy166II	GTNNAC	8 cut(s)	298, 549, 595, 803, 858, 1368, 1680, 2135
Hpy188I	TCNGA	7 cut(s)	1110, 1146, 1522, 2096, 2218, 2439, 2496
Hpy8I	GTNNAC	8 cut(s)	298, 549, 595, 803, 858, 1368, 1680, 2135
Hpy99I	CGWCG	2 cut(s)	278, 736
HpyAV	CCTTC	9 cut(s)	138, 169, 231, 439, 1166, 1517, 2377, 2437, 2549
HpyCH4III	ACNGT	7 cut(s)	10, 599, 629, 745, 807, 853, 2465
HpyCH4IV	ACGT	1 cut(s)	2131
HpyCH4V	TGCA	9 cut(s)	1025, 1281, 1368, 1780, 2312, 2354, 2379, 2468, 2655
HpyF3I	CTNAG	2 cut(s)	1422, 1801
HpySE526I	ACGT	1 cut(s)	2131
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	4 cut(s)	689, 956, 1184, 1729
Ksp22I	TGATCA	2 cut(s)	1105, 1863
Kzo9I	GATC	4 cut(s)	1105, 1863, 1951, 2155
LguI	GCTCTTC	1 cut(s)	2424
LmnI	GCTCC	4 cut(s)	484, 1222, 1346, 2146
Lsp1109I	GCAGC	3 cut(s)	988, 1336, 2489
LweI	GCATC	8 cut(s)	1008, 1021, 1101, 1381, 1716, 2028, 2443, 2602
MaeI	CTAG	3 cut(s)	1640, 2138, 2163
MaeII	ACGT	1 cut(s)	2131
MaeIII	GTNAC	1 cut(s)	2390
MalI	GATC	4 cut(s)	1107, 1865, 1953, 2157
MbiI	CCGCTC	3 cut(s)	55, 263, 308
MboI	GATC	4 cut(s)	1105, 1863, 1951, 2155
MboII	GAAGA	8 cut(s)	181, 220, 1828, 1837, 2408, 2441, 2452, 2542
MflI	RGATCY	1 cut(s)	2155
MhlI	GDGCHC	4 cut(s)	1370, 1968, 2151, 2651
MlsI	TGGCCA	1 cut(s)	1417
MluCI	AATT	9 cut(s)	578, 1123, 1232, 1296, 1400, 1440, 1452, 1906, 2367
MluNI	TGGCCA	1 cut(s)	1417
MmeI	TCCRAC	2 cut(s)	205, 1989
Mox20I	TGGCCA	1 cut(s)	1417
Mph1103I	ATGCAT	1 cut(s)	2381
MroXI	GAANNNNTTC	2 cut(s)	1403, 2447
MscI	TGGCCA	1 cut(s)	1417
MseI	TTAA	3 cut(s)	609, 693, 2046
MslI	CAYNNNNRTG	3 cut(s)	437, 909, 1617
Msp20I	TGGCCA	1 cut(s)	1417
MspA1I	CMGCKG	1 cut(s)	2108
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	4 cut(s)	447, 462, 466, 2388
MspR9I	CCNGG	4 cut(s)	289, 467, 2265, 2508
Mva1269I	GAATGC	2 cut(s)	649, 2381
MvaI	CCWGG	3 cut(s)	289, 2265, 2508
MvnI	CGCG	1 cut(s)	393
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	1618
NdeII	GATC	4 cut(s)	1105, 1863, 1951, 2155
NlaIV	GGNNCC	1 cut(s)	2148
NmeAIII	GCCGAG	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	1730
NsiI	ATGCAT	1 cut(s)	2381
NspI	RCATGY	3 cut(s)	1678, 2199, 2606
NspV	TTCGAA	1 cut(s)	641
PagI	TCATGA	2 cut(s)	1591, 2419
PceI	AGGCCT	1 cut(s)	1799
PciI	ACATGT	1 cut(s)	2602
PciSI	GCTCTTC	1 cut(s)	2424
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 291
PctI	GAATGC	2 cut(s)	649, 2381
PdmI	GAANNNNTTC	2 cut(s)	1403, 2447
PfeI	GAWTC	3 cut(s)	1328, 1707, 2091
PflMI	CCANNNNNTGG	1 cut(s)	1689
PkrI	GCNGC	5 cut(s)	31, 481, 1003, 1351, 2479
PscI	ACATGT	1 cut(s)	2602
PsiI	TTATAA	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	287, 2263, 2506
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	287, 2263, 2506
PspN4I	GGNNCC	1 cut(s)	2148
PspPI	GGNCC	3 cut(s)	291, 370, 625
PsuI	RGATCY	1 cut(s)	2155
PvuII	CAGCTG	1 cut(s)	2108
RsaI	GTAC	8 cut(s)	530, 620, 868, 884, 1679, 1997, 2456, 2573
RsaNI	GTAC	8 cut(s)	529, 619, 867, 883, 1678, 1996, 2455, 2572
RseI	CAYNNNNRTG	3 cut(s)	437, 909, 1617
SapI	GCTCTTC	1 cut(s)	2424
SaqAI	TTAA	3 cut(s)	609, 693, 2046
SatI	GCNGC	5 cut(s)	30, 480, 1002, 1350, 2478
Sau3AI	GATC	4 cut(s)	1105, 1863, 1951, 2155
Sau96I	GGNCC	3 cut(s)	291, 370, 625
ScaI	AGTACT	1 cut(s)	2573
ScrFI	CCNGG	4 cut(s)	289, 467, 2265, 2508
SduI	GDGCHC	4 cut(s)	1370, 1968, 2151, 2651
SfaNI	GCATC	8 cut(s)	1008, 1021, 1101, 1381, 1716, 2028, 2443, 2602
SfcI	CTRYAG	3 cut(s)	493, 1581, 2086
SfuI	TTCGAA	1 cut(s)	641
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	3 cut(s)	437, 909, 1617
SmlI	CTYRAG	4 cut(s)	311, 362, 692, 1177
SmoI	CTYRAG	4 cut(s)	311, 362, 692, 1177
Sse9I	AATT	9 cut(s)	578, 1123, 1232, 1296, 1400, 1440, 1452, 1906, 2367
SseBI	AGGCCT	1 cut(s)	1799
SspI	AATATT	1 cut(s)	1716
SspMI	CTAG	3 cut(s)	1640, 2138, 2163
StuI	AGGCCT	1 cut(s)	1799
StyD4I	CCNGG	4 cut(s)	287, 465, 2263, 2506
StyI	CCWWGG	2 cut(s)	438, 1564
TaaI	ACNGT	7 cut(s)	10, 599, 629, 745, 807, 853, 2465
TaiI	ACGT	1 cut(s)	2134
TaqII	GACCGA	1 cut(s)	1524
TasI	AATT	9 cut(s)	578, 1123, 1232, 1296, 1400, 1440, 1452, 1906, 2367
TatI	WGTACW	4 cut(s)	528, 1677, 2454, 2571
TauI	GCSGC	2 cut(s)	32, 482
TfiI	GAWTC	3 cut(s)	1328, 1707, 2091
Tru1I	TTAA	3 cut(s)	609, 693, 2046
Tru9I	TTAA	3 cut(s)	609, 693, 2046
TscAI	CASTG	3 cut(s)	1418, 2470, 2651
TseI	GCWGC	3 cut(s)	1001, 1349, 2477
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	3 cut(s)	1418, 2470, 2651
Van91I	CCANNNNNTGG	1 cut(s)	1689
Vha464I	CTTAAG	1 cut(s)	692
VneI	GTGCAC	1 cut(s)	1366
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	1123, 1232, 1296
XceI	RCATGY	3 cut(s)	1678, 2199, 2606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2271
XmiI	GTMKAC	1 cut(s)	2134
XmnI	GAANNNNTTC	2 cut(s)	1403, 2447
XspI	CTAG	3 cut(s)	1640, 2138, 2163
ZrmI	AGTACT	1 cut(s)	2573
Zsp2I	ATGCAT	1 cut(s)	2381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.