Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

16468383 .. 16471228

Gene Structure 2846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGAACACCGTTATCCAACCCACCTTCGCCGCCTTACCTCCTCCGCTCTCTCACTACTACCCTCCAAAACCACCACCGCACTCCTCTCTTTCTCTCTCTCCCTCTAGACCCAAACCCAAAACCCCCCTCAACTTCTCCACCTCTCTCCCCACCCAATCCCTCCAACCCCTTTTCACCACTCCACACCCTCCCAATCCCAATGGCTCTCACCAAACCCACTCTCTCTTCTCCCATCTCCTCCATCTGCTCCGCCTCTCGTCCCGCCACGCCGACCCCGAGCTCGCCCGGGCCGTCCACGCCTCCGTTCTCAAGCTCGAAAACGACACCCATCTCGGCAACGCCCTTGTTTCGGCTTATCTCAAGCTGGGTCTCGTTCCCGACGCTTACCGGGTCTTTCAGAGCCTCCCGTGCCCCAATGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGAGGAGGCGGCGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGGGTCTGCAGGTTCATGCCTTGGCGGCTAAGATGGGTTACTTGGATTGTGTTTTTGTTTCCAATGCCGTGATGGGTCTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCAGAGAGACATTGCGTCTTGGAATACTGTTATGGCGAGTCTAGCGAATGAGTTTATGTATGATGAAGTGTTTGAATTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTAGCGGACTATATCACGCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCATGCCTATGCTGTCAAGACTGGTTTGGAGGGCAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGCGAGGGATGTTATTACTTGGACGGAGATGATTACTGCCTACATGGACTTCGGGTTGGTGGGGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTGTTTTTCTTATAATGCTCTAATGGCTGGCTTTTGTCGAAATGGGGAAGGTTTGAGGGCACTGGATTTATTTATGAGAATGGTGGAGGAGGGTATGGAGCTGACAGAATTCACTCTGACTAGTGTTATTGGTGCTTGTGGATTGCTTATGGACTGCAAAACTAGTGAGCAAATTCATGGGTTTGTTGTCAAGTTTGGTTTTGATTCAAATGCTTATATTGGAGCTGCATTGCTTGATATGTGCACAAGGTGTGATCGAATGGGAGATGCCAAGAAACTGTTTCACCAGTGGCCAAGTGAGCAGGAAAAATCTATAATTTTGACTTCACTTATATGTGGGTATACTCGAACTGGGCAACTGGATGAGGCAATTTCTATTTTCCACCGATATCAATCAGAAGGAATAATGGTTGTGGATGAAGTTGCATCAACTTCACTACTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCGCATGCTATCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACGATGAGCATGTACACAAAGTGCTGGAACATGGATGAGGGAATCAAAATATTCAGTATGATGCCCACTCGCGACATAGTTTCATGGAATGTTTTGCTGGCTGGTTATCTTCTGCATAGACGGGGTGATGAGACCTTAGCGGTCTGGTCAAAGATGGAGAAGACTGGCATAAAACCAGACAAGATTACCTTTATTTTGATCATTTCAGCACACAGACATACTAACTCCAATTCTGTTGACAATTGTCGAAGTTTGTTTCTCTCCATGAAAGCAGTTTATGACATTGAGCCCACTTCAGAGCATTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTGAGCCTCAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCTGTATGAATGCAACTGTTGGAAAAAGGGTTGTGAAACGTATTCTTGAGATGGAGCCCAAAGATCCATCTAGCTACATACTCATATCAAATCTGTATTCAGCATCTGGGAGATGGCATTGCTCTGAAATGGTGAGAGATGACATGAGAAAAAAGGGATTCTGGAAGCACCCAGGTCGAAGTTGGTTCATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCATCCCCAGGCGAAAGACATATATAGCGGATTAGAAATACTTATTGTAGAATGCATGAAAGCTGGTTACGTTCCAGACACAAGCTTTGTTCTTCATGAAGTGGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTAGCAGCCACCTATGGGCTTCTGACCAATAAACCAGGAAAACCAATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATACCTTCTTAAAGTACTTATCCATTGTTGCCAAGAGAGCAATACATGTAAGAGATGCTTCCGGATTTCACTATTTTTCAAATGGTCAGTGCTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

887

Amino Acids

99.14

Weight (kDa)

6.38

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	137 - 167	1.9e-06	PPR repeat
PPR_2	PF13041	138 - 186	1.2e-11	PPR repeat family
PPR_3	PF13812	138 - 185	2.9e-07	Pentatricopeptide repeat domain
PPR	PF01535	141 - 171	2.2e-07	PPR repeat
PPR_2	PF13041	373 - 419	1.5e-09	PPR repeat family
PPR	PF01535	375 - 404	4.4e-07	PPR repeat
PPR_2	PF13041	577 - 623	1.2e-09	PPR repeat family
E_motif	PF20431	702 - 757	2.3e-15	E motif
DYW_deaminase	PF14432	795 - 887	2.5e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1131
Acc36I	ACCTGC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	1460
AccII	CGCG	1 cut(s)	1731
AccIII	TCCGGA	1 cut(s)	2612
AclWI	GGATC	1 cut(s)	2144
AcoI	YGGCCR	2 cut(s)	460, 1409
AcsI	RAATTY	2 cut(s)	1226, 1290
AcuI	CTGAAG	1 cut(s)	1938
AdeI	CACNNNGTG	2 cut(s)	1368, 1680
AfaI	GTAC	6 cut(s)	527, 862, 1673, 1991, 2450, 2567
AfiI	CCNNNNNNNGG	6 cut(s)	349, 418, 469, 577, 2326, 2481
AflII	CTTAAG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	2596
AgsI	TTSAA	3 cut(s)	785, 1326, 2631
AhdI	GACNNNNNGTC	1 cut(s)	724
AhlI	ACTAGT	2 cut(s)	1238, 1280
AjnI	CCWGG	3 cut(s)	2257, 2325, 2500
Alw21I	GWGCWC	3 cut(s)	282, 1364, 2645
Alw26I	GTCTC	4 cut(s)	374, 711, 1784, 2538
Alw44I	GTGCAC	1 cut(s)	1360
AlwI	GGATC	1 cut(s)	2144
AlwNI	CAGNNNCTG	1 cut(s)	2192
Ama87I	CYCGRG	2 cut(s)	275, 285
Aor13HI	TCCGGA	1 cut(s)	2612
AoxI	GGCC	3 cut(s)	288, 460, 1409
ApaLI	GTGCAC	1 cut(s)	1360
ApeKI	GCWGC	3 cut(s)	995, 1343, 2471
ApoI	RAATTY	2 cut(s)	1226, 1290
ArsI	GACNNNNNNTTYG	2 cut(s)	2387, 2419
Asp700I	GAANNNNTTC	1 cut(s)	2441
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	288, 568
AsuC2I	CCSGG	4 cut(s)	286, 287, 389, 464
AsuHPI	GGTGA	8 cut(s)	166, 200, 421, 821, 980, 1394, 1796, 2230
AvaI	CYCGRG	2 cut(s)	275, 285
AvaII	GGWCC	1 cut(s)	568
BaeGI	GKGCMC	3 cut(s)	413, 1180, 1364
BaeI	ACNNNNGTAYC	2 cut(s)	1981, 2014
BalI	TGGCCA	1 cut(s)	1411
BanII	GRGCYC	3 cut(s)	282, 1950, 2145
BbsI	GAAGAC	1 cut(s)	1826
Bbv12I	GWGCWC	3 cut(s)	282, 1364, 2645
BbvI	GCAGC	3 cut(s)	982, 1330, 2483
BceAI	ACGGC	2 cut(s)	275, 629
BcgI	CGANNNNNNTGC	2 cut(s)	2243, 2277
BciT130I	CCWGG	3 cut(s)	2259, 2327, 2502
BciVI	GTATCC	1 cut(s)	2011
BclI	TGATCA	2 cut(s)	1099, 1857
BcnI	CCSGG	4 cut(s)	286, 287, 389, 464
BcoDI	GTCTC	4 cut(s)	374, 711, 1784, 2538
BcuI	ACTAGT	2 cut(s)	1238, 1280
BfaI	CTAG	7 cut(s)	105, 752, 1239, 1281, 1634, 2157, 2468
BfmI	CTRYAG	4 cut(s)	490, 584, 1575, 2080
BfrI	CTTAAG	1 cut(s)	689
BfuAI	ACCTGC	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	2011
BglI	GCCNNNNNGGC	1 cut(s)	602
BisI	GCNGC	6 cut(s)	30, 477, 603, 996, 1344, 2472
BlsI	GCNGC	6 cut(s)	31, 478, 604, 997, 1345, 2473
BmcAI	AGTACT	1 cut(s)	2567
Bme1390I	CCNGG	7 cut(s)	286, 287, 389, 464, 2259, 2327, 2502
Bme18I	GGWCC	1 cut(s)	568
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	2 cut(s)	275, 285
BmgT120I	GGNCC	2 cut(s)	288, 568
BmiI	GGNNCC	1 cut(s)	2142
BmrFI	CCNGG	7 cut(s)	286, 287, 389, 464, 2259, 2327, 2502
BmrI	ACTGGG	3 cut(s)	1479, 1601, 2002
BmsI	GCATC	9 cut(s)	1002, 1095, 1375, 1553, 1710, 2022, 2198, 2437, 2596
BmuI	ACTGGG	3 cut(s)	1479, 1601, 2002
BoxI	GACNNNNGTC	1 cut(s)	1902
BpiI	GAAGAC	1 cut(s)	1826
Bpu10I	CCTNAGC	1 cut(s)	1795
BpuEI	CTTGAG	4 cut(s)	293, 344, 2031, 2153
BpuMI	CCSGG	4 cut(s)	286, 287, 389, 464
BsaBI	GATNNNNATC	1 cut(s)	1510
BsaI	GGTCTC	2 cut(s)	374, 1784
BsaJI	CCNNGG	4 cut(s)	285, 597, 2257, 2325
BsaWI	WCCGGW	2 cut(s)	443, 2612
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	6 cut(s)	349, 418, 469, 577, 2326, 2481
Bse3DI	GCAATG	4 cut(s)	720, 952, 1346, 2203
Bse8I	GATNNNNATC	1 cut(s)	1510
BseAI	TCCGGA	1 cut(s)	2612
BseBI	CCWGG	3 cut(s)	2259, 2327, 2502
BseDI	CCNNGG	4 cut(s)	285, 597, 2257, 2325
BseGI	GGATG	9 cut(s)	501, 1017, 1030, 1486, 1540, 1699, 2011, 2293, 2320
BseJI	GATNNNNATC	1 cut(s)	1510
BseLI	CCNNNNNNNGG	6 cut(s)	349, 418, 469, 577, 2326, 2481
BseMI	GCAATG	4 cut(s)	720, 952, 1346, 2203
BseMII	CTCAG	1 cut(s)	725
BseRI	GAGGAG	6 cut(s)	30, 73, 227, 485, 514, 1220
BseSI	GKGCMC	3 cut(s)	413, 1180, 1364
BseX3I	CGGCCG	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	982, 1330, 2483
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	1731
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	290, 462, 1411
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	3 cut(s)	282, 1364, 2645
BsiHKCI	CYCGRG	2 cut(s)	275, 285
BsiSI	CCGG	6 cut(s)	286, 388, 444, 459, 463, 2613
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	6 cut(s)	349, 418, 469, 577, 2326, 2481
BsmAI	GTCTC	4 cut(s)	374, 711, 1784, 2538
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	2 cut(s)	2101, 2375
BsnI	GGCC	3 cut(s)	290, 462, 1411
Bso31I	GGTCTC	2 cut(s)	374, 1784
BsoBI	CYCGRG	2 cut(s)	275, 285
Bsp1286I	GDGCHC	7 cut(s)	282, 413, 1180, 1364, 1950, 2145, 2645
Bsp13I	TCCGGA	1 cut(s)	2612
Bsp1407I	TGTACA	1 cut(s)	1671
Bsp143I	GATC	4 cut(s)	1099, 1372, 1857, 2149
Bsp68I	TCGCGA	1 cut(s)	1731
BspANI	GGCC	3 cut(s)	290, 462, 1411
BspCNI	CTCAG	1 cut(s)	724
BspEI	TCCGGA	1 cut(s)	2612
BspFNI	CGCG	1 cut(s)	1731
BspHI	TCATGA	2 cut(s)	1585, 2413
BspLI	GGNNCC	1 cut(s)	2142
BspMAI	CTGCAG	1 cut(s)	588
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	2144
BspQI	GCTCTTC	1 cut(s)	2418
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	2 cut(s)	374, 1784
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	4 cut(s)	720, 952, 1346, 2203
BsrGI	TGTACA	1 cut(s)	1671
BssECI	CCNNGG	4 cut(s)	285, 597, 2257, 2325
BssMI	GATC	4 cut(s)	1099, 1372, 1857, 2149
BssNAI	GTATAC	1 cut(s)	1461
BssT1I	CCWWGG	1 cut(s)	597
Bst1107I	GTATAC	1 cut(s)	1461
Bst2UI	CCWGG	3 cut(s)	2259, 2327, 2502
Bst4CI	ACNGT	6 cut(s)	10, 739, 847, 1398, 2104, 2459
Bst6I	CTCTTC	3 cut(s)	230, 462, 2418
BstAFI	CTTAAG	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	1671
BstC8I	GCNNGC	6 cut(s)	282, 1017, 1147, 1614, 1758, 2064
BstDEI	CTNAG	3 cut(s)	606, 711, 1795
BstF5I	GGATG	9 cut(s)	501, 1017, 1030, 1486, 1540, 1699, 2011, 2293, 2320
BstFNI	CGCG	1 cut(s)	1731
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	4 cut(s)	1102, 1375, 1860, 2152
BstMAI	GTCTC	4 cut(s)	374, 711, 1784, 2538
BstMBI	GATC	4 cut(s)	1099, 1372, 1857, 2149
BstMCI	CGRYCG	1 cut(s)	463
BstNI	CCWGG	3 cut(s)	2259, 2327, 2502
BstNSI	RCATGY	3 cut(s)	1616, 1672, 2600
BstPAI	GACNNNNGTC	1 cut(s)	1902
BstSCI	CCNGG	7 cut(s)	284, 285, 387, 462, 2257, 2325, 2500
BstSFI	CTRYAG	4 cut(s)	490, 584, 1575, 2080
BstSLI	GKGCMC	3 cut(s)	413, 1180, 1364
BstUI	CGCG	1 cut(s)	1731
BstV1I	GCAGC	3 cut(s)	982, 1330, 2483
BstV2I	GAAGAC	1 cut(s)	1826
BstX2I	RGATCY	1 cut(s)	2149
BstYI	RGATCY	1 cut(s)	2149
BstZ17I	GTATAC	1 cut(s)	1461
BstZI	CGGCCG	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	2011
BsuRI	GGCC	3 cut(s)	290, 462, 1411
BtsCI	GGATG	9 cut(s)	501, 1017, 1030, 1486, 1540, 1699, 2011, 2293, 2320
BtsIMutI	CAGTG	4 cut(s)	1178, 1412, 2464, 2645
BtuMI	TCGCGA	1 cut(s)	1731
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	6 cut(s)	282, 1017, 1147, 1614, 1758, 2064
CaiI	CAGNNNCTG	1 cut(s)	2192
CciI	TCATGA	2 cut(s)	1585, 2413
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	288, 568
Cfr9I	CCCGGG	1 cut(s)	285
CseI	GACGC	2 cut(s)	389, 714
Csp6I	GTAC	6 cut(s)	526, 861, 1672, 1990, 2449, 2566
CviQI	GTAC	6 cut(s)	526, 861, 1672, 1990, 2449, 2566
DdeI	CTNAG	3 cut(s)	606, 711, 1795
DpnI	GATC	4 cut(s)	1101, 1374, 1859, 2151
DpnII	GATC	4 cut(s)	1099, 1372, 1857, 2149
DraIII	CACNNNGTG	2 cut(s)	1368, 1680
DriI	GACNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	2 cut(s)	460, 1409
EagI	CGGCCG	1 cut(s)	460
Eam1104I	CTCTTC	3 cut(s)	230, 462, 2418
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	3 cut(s)	230, 462, 2418
EciI	GGCGGA	2 cut(s)	239, 494
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	3 cut(s)	282, 1950, 2145
Eco31I	GGTCTC	2 cut(s)	374, 1784
Eco32I	GATATC	1 cut(s)	1508
Eco47I	GGWCC	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	1938
Eco88I	CYCGRG	2 cut(s)	275, 285
EcoICRI	GAGCTC	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	1226
EcoRII	CCWGG	3 cut(s)	2257, 2325, 2500
EcoRV	GATATC	1 cut(s)	1508
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	2375
EcoT38I	GRGCYC	3 cut(s)	282, 1950, 2145
ErhI	CCWWGG	1 cut(s)	597
FalI	AAGNNNNNCTT	8 cut(s)	1832, 1864, 2021, 2053, 2429, 2461, 2593, 2625
FaqI	GGGAC	1 cut(s)	244
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	2 cut(s)	1099, 1857
FblI	GTMKAC	1 cut(s)	1460
Fnu4HI	GCNGC	6 cut(s)	30, 477, 603, 996, 1344, 2472
FokI	GGATG	9 cut(s)	508, 1024, 1037, 1493, 1547, 1706, 2018, 2280, 2307
FriOI	GRGCYC	3 cut(s)	282, 1950, 2145
Fsp4HI	GCNGC	6 cut(s)	30, 477, 603, 996, 1344, 2472
FspBI	CTAG	7 cut(s)	105, 752, 1239, 1281, 1634, 2157, 2468
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	6 cut(s)	30, 477, 603, 996, 1344, 2472
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	290, 462, 1411
HapII	CCGG	6 cut(s)	286, 388, 444, 459, 463, 2613
HgaI	GACGC	2 cut(s)	389, 714
HhaI	GCGC	1 cut(s)	688
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	1897
HindII	GTYRAC	1 cut(s)	1897
HindIII	AAGCTT	1 cut(s)	2401
HinfI	GANTC	5 cut(s)	748, 1322, 1701, 2085, 2244
HpaII	CCGG	6 cut(s)	286, 388, 444, 459, 463, 2613
HphI	GGTGA	8 cut(s)	166, 200, 421, 821, 980, 1394, 1796, 2230
Hpy166II	GTNNAC	5 cut(s)	295, 1362, 1461, 1674, 1897
Hpy8I	GTNNAC	5 cut(s)	295, 1362, 1461, 1674, 1897
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	7 cut(s)	34, 878, 1160, 1511, 2431, 2543, 2566
HpyCH4III	ACNGT	6 cut(s)	10, 739, 847, 1398, 2104, 2459
HpyCH4IV	ACGT	2 cut(s)	2125, 2388
HpyF3I	CTNAG	3 cut(s)	606, 711, 1795
HpySE526I	ACGT	2 cut(s)	2125, 2388
HspAI	GCGC	1 cut(s)	686
Kpn2I	TCCGGA	1 cut(s)	2612
Ksp22I	TGATCA	2 cut(s)	1099, 1857
Kzo9I	GATC	4 cut(s)	1099, 1372, 1857, 2149
LguI	GCTCTTC	1 cut(s)	2418
LmnI	GCTCC	5 cut(s)	252, 481, 1216, 1340, 2140
Lsp1109I	GCAGC	3 cut(s)	982, 1330, 2483
LweI	GCATC	9 cut(s)	1002, 1095, 1375, 1553, 1710, 2022, 2198, 2437, 2596
MaeI	CTAG	7 cut(s)	105, 752, 1239, 1281, 1634, 2157, 2468
MaeII	ACGT	2 cut(s)	2125, 2388
MaeIII	GTNAC	2 cut(s)	614, 2384
MalI	GATC	4 cut(s)	1101, 1374, 1859, 2151
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	1099, 1372, 1857, 2149
MboII	GAAGA	8 cut(s)	217, 479, 1760, 1831, 2402, 2435, 2446, 2536
MfeI	CAATTG	1 cut(s)	1900
MflI	RGATCY	1 cut(s)	2149
MhlI	GDGCHC	7 cut(s)	282, 413, 1180, 1364, 1950, 2145, 2645
MlsI	TGGCCA	1 cut(s)	1411
MluNI	TGGCCA	1 cut(s)	1411
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	4 cut(s)	40, 187, 1983, 2086
Mox20I	TGGCCA	1 cut(s)	1411
Mph1103I	ATGCAT	1 cut(s)	2375
MroI	TCCGGA	1 cut(s)	2612
MroXI	GAANNNNTTC	1 cut(s)	2441
MscI	TGGCCA	1 cut(s)	1411
MseI	TTAA	2 cut(s)	690, 2561
MslI	CAYNNNNRTG	3 cut(s)	903, 1450, 1611
Msp20I	TGGCCA	1 cut(s)	1411
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	6 cut(s)	286, 388, 444, 459, 463, 2613
MspR9I	CCNGG	7 cut(s)	286, 287, 389, 464, 2259, 2327, 2502
MunI	CAATTG	1 cut(s)	1900
Mva1269I	GAATGC	2 cut(s)	2101, 2375
MvaI	CCWGG	3 cut(s)	2259, 2327, 2502
MvnI	CGCG	1 cut(s)	1731
NciI	CCSGG	4 cut(s)	286, 287, 389, 464
NdeII	GATC	4 cut(s)	1099, 1372, 1857, 2149
NlaIV	GGNNCC	1 cut(s)	2142
NmeAIII	GCCGAG	1 cut(s)	312
NruI	TCGCGA	1 cut(s)	1731
NsiI	ATGCAT	1 cut(s)	2375
NspI	RCATGY	3 cut(s)	1616, 1672, 2600
PaeI	GCATGC	1 cut(s)	1616
PagI	TCATGA	2 cut(s)	1585, 2413
PciI	ACATGT	1 cut(s)	2596
PciSI	GCTCTTC	1 cut(s)	2418
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 288
PctI	GAATGC	2 cut(s)	2101, 2375
PdmI	GAANNNNTTC	1 cut(s)	2441
PfeI	GAWTC	4 cut(s)	1322, 1701, 2085, 2244
PkrI	GCNGC	6 cut(s)	31, 478, 604, 997, 1345, 2473
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
PscI	ACATGT	1 cut(s)	2596
PshAI	GACNNNNGTC	1 cut(s)	1902
PsiI	TTATAA	1 cut(s)	1131
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	3 cut(s)	2257, 2325, 2500
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	2257, 2325, 2500
PspN4I	GGNNCC	1 cut(s)	2142
PspPI	GGNCC	2 cut(s)	288, 568
PstI	CTGCAG	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	2192
PsuI	RGATCY	1 cut(s)	2149
RruI	TCGCGA	1 cut(s)	1731
RsaI	GTAC	6 cut(s)	527, 862, 1673, 1991, 2450, 2567
RsaNI	GTAC	6 cut(s)	526, 861, 1672, 1990, 2449, 2566
RseI	CAYNNNNRTG	3 cut(s)	903, 1450, 1611
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	2418
SaqAI	TTAA	2 cut(s)	690, 2561
SatI	GCNGC	6 cut(s)	30, 477, 603, 996, 1344, 2472
Sau3AI	GATC	4 cut(s)	1099, 1372, 1857, 2149
Sau96I	GGNCC	2 cut(s)	288, 568
ScaI	AGTACT	1 cut(s)	2567
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	7 cut(s)	286, 287, 389, 464, 2259, 2327, 2502
SduI	GDGCHC	7 cut(s)	282, 413, 1180, 1364, 1950, 2145, 2645
SfaNI	GCATC	9 cut(s)	1002, 1095, 1375, 1553, 1710, 2022, 2198, 2437, 2596
SfcI	CTRYAG	4 cut(s)	490, 584, 1575, 2080
SinI	GGWCC	1 cut(s)	568
SmaI	CCCGGG	1 cut(s)	287
SmiMI	CAYNNNNRTG	3 cut(s)	903, 1450, 1611
SmlI	CTYRAG	5 cut(s)	308, 359, 689, 2046, 2132
SmoI	CTYRAG	5 cut(s)	308, 359, 689, 2046, 2132
SpeI	ACTAGT	2 cut(s)	1238, 1280
SphI	GCATGC	1 cut(s)	1616
SrfI	GCCCGGGC	1 cut(s)	287
SspI	AATATT	1 cut(s)	1710
SspMI	CTAG	7 cut(s)	105, 752, 1239, 1281, 1634, 2157, 2468
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	7 cut(s)	284, 285, 387, 462, 2257, 2325, 2500
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	6 cut(s)	10, 739, 847, 1398, 2104, 2459
TaiI	ACGT	2 cut(s)	2128, 2391
TatI	WGTACW	5 cut(s)	525, 860, 1671, 2448, 2565
TauI	GCSGC	3 cut(s)	32, 479, 605
TfiI	GAWTC	4 cut(s)	1322, 1701, 2085, 2244
Tru1I	TTAA	2 cut(s)	690, 2561
Tru9I	TTAA	2 cut(s)	690, 2561
TscAI	CASTG	4 cut(s)	1185, 1412, 2464, 2645
TseI	GCWGC	3 cut(s)	995, 1343, 2471
TspGWI	ACGGA	2 cut(s)	292, 1055
TspMI	CCCGGG	1 cut(s)	285
TspRI	CASTG	4 cut(s)	1185, 1412, 2464, 2645
Vha464I	CTTAAG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	1360
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	2 cut(s)	1226, 1290
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	3 cut(s)	1616, 1672, 2600
XcmI	CCANNNNNNNNNTGG	2 cut(s)	646, 2265
XmaI	CCCGGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	1460
XmnI	GAANNNNTTC	1 cut(s)	2441
XspI	CTAG	7 cut(s)	105, 752, 1239, 1281, 1634, 2157, 2468
ZrmI	AGTACT	1 cut(s)	2567
Zsp2I	ATGCAT	1 cut(s)	2375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.