Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Reverse (-)

29300917 .. 29303120

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCCTTAAATCCAAACCCGATTATGAAATTTGGGGACCCGATTAATAATCCAAACCCGGAATACAATGATCCACAGCTCAGAATCCCTCTTCTGGAAATTGGTTTTAAACCTTTGTGCTTAGATATCTATCCCATTCGTTCTTCATCAAGGCTCCCTAATCCAGTTATAGGGGTTGTGGGAGGCAAGATTTCAGACAATCCGGACCCACTCCCTGATCTGAACCAAGACCCAATCCCTGACCCGGTTCTCCGTCCCTTTGACATCAATGAAGGGGCTGACCCAGTGCAAGAAAGCGACACAGTTGATAGCTTGATCCAAAGGTCTGAAGAAATGGAAGAATTTGGAGAGAACAACACGAAGGCTTATGAGCGATTGCTTGTCAAGCTGCATGCGACGTTCTGGAACAACATGCAGGCGCCACCGACCATACCTTACAAGCCAACAATGCCAGGTGAAGCAATGACATTCTTCCAAGATTCGTTGATATTGACAGAGAAAGGTCACGTTTCTCTGACTCACTGTGTCAATGCTTTTCAAAGTCTTCACCAGCAGGCTTTACACTTGGGCTGCCTTCTTTCAGAAGCCTTGGTAGAATTTCTTCTCTTCCTCTCCAAGTTTCCTTCACTGGCCACCAAGTTTGATAAGTTCAAGATAAATTTTCAAGAAATCGGGAAGAACAACCCAGAGATGAAGGTGATTCACAACATAAATGCTATACTCACAACTGCCCAGGATCTTCTACAGAACAATGGAAATGCAATGCTACATGCTTCTTTTGCTGCTCATGATGTGGATGGATTGCTCCACAGGTTTGAACAAGTAATATGGCAACTCCAGAAAATCTTCACCTATCCTCAGAACCCAAATTCTCTGATTCTAAGTGCTCTTGAAACCTCTCCGATAGCCATTGACCTGAATAATTGCCATAAAGCTATACATGAAGTTACACTTCTGGTCCACAACTTCAACTCCTCAGCACCATCATTGACTCAGACTGCAGGAAGCAACCTTCAGCAGCTCAAGGCTAGTCTAATGCCCTTCATAAAACAAAACTGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

39.63

Weight (kDa)

5.32

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	3 cut(s)	65, 310, 744
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	5 cut(s)	29, 341, 596, 658, 868
AcuI	CTGAAG	2 cut(s)	348, 998
AcyI	GRCGYC	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	94, 170, 244
AgsI	TTSAA	6 cut(s)	539, 652, 665, 818, 893, 970
AjnI	CCWGG	2 cut(s)	451, 732
AluBI	AGCT	5 cut(s)	79, 312, 388, 935, 1021
AluI	AGCT	5 cut(s)	79, 312, 388, 935, 1021
Alw21I	GWGCWC	1 cut(s)	889
AlwI	GGATC	3 cut(s)	65, 310, 744
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	4 cut(s)	388, 570, 782, 1018
ApoI	RAATTY	5 cut(s)	29, 341, 596, 658, 868
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	2 cut(s)	600, 845
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	37, 205, 958
AsuC2I	CCSGG	2 cut(s)	59, 245
AsuHPI	GGTGA	4 cut(s)	467, 539, 709, 841
AvaII	GGWCC	3 cut(s)	37, 205, 958
BalI	TGGCCA	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	889
BbvCI	CCTCAGC	1 cut(s)	976
BbvI	GCAGC	4 cut(s)	375, 557, 769, 1030
BccI	CCATC	2 cut(s)	791, 991
BciT130I	CCWGG	2 cut(s)	453, 734
BcnI	CCSGG	2 cut(s)	59, 245
BfaI	CTAG	1 cut(s)	1029
BfmI	CTRYAG	2 cut(s)	743, 999
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	4 cut(s)	389, 571, 783, 1019
BlsI	GCNGC	4 cut(s)	390, 572, 784, 1020
Bme1390I	CCNGG	4 cut(s)	59, 245, 453, 734
Bme18I	GGWCC	3 cut(s)	37, 205, 958
BmgT120I	GGNCC	3 cut(s)	37, 205, 958
BmiI	GGNNCC	5 cut(s)	38, 39, 155, 207, 420
BmrFI	CCNGG	4 cut(s)	59, 245, 453, 734
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	821
Bpu10I	CCTNAGC	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	1007
BpuMI	CCSGG	2 cut(s)	59, 245
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	588, 732
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 170, 244
Bse1I	ACTGG	4 cut(s)	164, 284, 633, 1061
Bse3DI	GCAATG	2 cut(s)	468, 768
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	453, 734
BseDI	CCNNGG	2 cut(s)	588, 732
BseGI	GGATG	1 cut(s)	802
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	94, 170, 244
BseMI	GCAATG	2 cut(s)	468, 768
BseMII	CTCAG	4 cut(s)	94, 872, 990, 1007
BseNI	ACTGG	4 cut(s)	164, 284, 633, 1061
BseRI	GAGGAG	1 cut(s)	964
BseXI	GCAGC	4 cut(s)	375, 557, 769, 1030
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	3 cut(s)	59, 203, 245
BslFI	GGGAC	2 cut(s)	50, 240
BslI	CCNNNNNNNGG	3 cut(s)	94, 170, 244
BsmFI	GGGAC	2 cut(s)	50, 240
BsnI	GGCC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	70, 217, 315, 736
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	4 cut(s)	93, 871, 989, 1006
BspEI	TCCGGA	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	5 cut(s)	38, 39, 155, 207, 420
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	3 cut(s)	65, 310, 744
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	468, 768
BsrI	ACTGG	4 cut(s)	164, 284, 633, 1061
BssECI	CCNNGG	2 cut(s)	588, 732
BssMI	GATC	4 cut(s)	70, 217, 315, 736
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	453, 734
Bst4CI	ACNGT	2 cut(s)	304, 524
Bst6I	CTCTTC	2 cut(s)	96, 611
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	393, 417, 555
BstDEI	CTNAG	7 cut(s)	80, 121, 858, 881, 976, 993, 1062
BstF5I	GGATG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	73, 220, 318, 739
BstMBI	GATC	4 cut(s)	70, 217, 315, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 448, 779
BstNI	CCWGG	2 cut(s)	453, 734
BstNSI	RCATGY	3 cut(s)	395, 415, 773
BstSCI	CCNGG	4 cut(s)	57, 243, 451, 732
BstSFI	CTRYAG	2 cut(s)	743, 999
BstV1I	GCAGC	4 cut(s)	375, 557, 769, 1030
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	291, 520, 626
Cac8I	GCNNGC	3 cut(s)	393, 417, 555
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	37, 205, 958
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	5 cut(s)	392, 412, 770, 788, 941
DdeI	CTNAG	7 cut(s)	80, 121, 858, 881, 976, 993, 1062
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	4 cut(s)	72, 219, 317, 738
DpnII	GATC	4 cut(s)	70, 217, 315, 736
DraI	TTTAAA	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	96, 611
EarI	CTCTTC	2 cut(s)	96, 611
Eco130I	CCWWGG	1 cut(s)	588
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	3 cut(s)	37, 205, 958
Eco57I	CTGAAG	2 cut(s)	348, 998
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	451, 732
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	588
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	5 cut(s)	395, 415, 773, 791, 944
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	2 cut(s)	50, 240
FatI	CATG	5 cut(s)	391, 411, 769, 787, 940
Fnu4HI	GCNGC	4 cut(s)	389, 571, 783, 1019
FokI	GGATG	1 cut(s)	809
Fsp4HI	GCNGC	4 cut(s)	389, 571, 783, 1019
FspBI	CTAG	1 cut(s)	1029
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	389, 571, 783, 1019
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	3 cut(s)	59, 203, 245
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	5 cut(s)	395, 415, 773, 791, 944
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	6 cut(s)	84, 479, 517, 700, 877, 991
HpaII	CCGG	3 cut(s)	59, 203, 245
HphI	GGTGA	4 cut(s)	467, 539, 709, 841
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188III	TCNNGA	9 cut(s)	95, 203, 403, 652, 665, 673, 788, 838, 890
Hpy8I	GTNNAC	1 cut(s)	961
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	7 cut(s)	266, 355, 584, 633, 688, 1022, 1051
HpyCH4III	ACNGT	2 cut(s)	304, 524
HpyCH4IV	ACGT	2 cut(s)	398, 507
HpyCH4V	TGCA	5 cut(s)	289, 391, 415, 761, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 448, 779
HpyF3I	CTNAG	7 cut(s)	80, 121, 858, 881, 976, 993, 1062
HpySE526I	ACGT	2 cut(s)	398, 507
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	5 cut(s)	395, 415, 773, 791, 944
HspAI	GCGC	1 cut(s)	419
KasI	GGCGCC	1 cut(s)	418
KflI	GGGWCCC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	70, 217, 315, 736
LmnI	GCTCC	2 cut(s)	159, 810
Lsp1109I	GCAGC	4 cut(s)	375, 557, 769, 1030
MaeI	CTAG	1 cut(s)	1029
MaeII	ACGT	2 cut(s)	398, 507
MaeIII	GTNAC	2 cut(s)	503, 946
MalI	GATC	4 cut(s)	72, 219, 317, 738
MboI	GATC	4 cut(s)	70, 217, 315, 736
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	889
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	7 cut(s)	29, 99, 341, 596, 658, 868, 922
MluNI	TGGCCA	1 cut(s)	632
Mly113I	GGCGCC	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	511, 985
MnlI	CCTC	6 cut(s)	99, 176, 620, 867, 907, 985
Mox20I	TGGCCA	1 cut(s)	632
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	2 cut(s)	600, 845
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	3 cut(s)	8, 45, 108
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	3 cut(s)	59, 203, 245
MspR9I	CCNGG	4 cut(s)	59, 245, 453, 734
MvaI	CCWGG	2 cut(s)	453, 734
MwoI	GCNNNNNNNGC	3 cut(s)	385, 448, 779
NarI	GGCGCC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	59, 245
NdeII	GATC	4 cut(s)	70, 217, 315, 736
NlaIII	CATG	5 cut(s)	395, 415, 773, 791, 944
NlaIV	GGNNCC	5 cut(s)	38, 39, 155, 207, 420
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	3 cut(s)	395, 415, 773
PaeI	GCATGC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	787
PdmI	GAANNNNTTC	2 cut(s)	600, 845
PfeI	GAWTC	4 cut(s)	84, 479, 700, 877
PkrI	GCNGC	4 cut(s)	390, 572, 784, 1020
PleI	GAGTC	2 cut(s)	511, 985
PluTI	GGCGCC	1 cut(s)	422
PpsI	GAGTC	2 cut(s)	511, 985
PpuMI	RGGWCCY	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	451, 732
PspGI	CCWGG	2 cut(s)	451, 732
PspN4I	GGNNCC	5 cut(s)	38, 39, 155, 207, 420
PspPI	GGNCC	3 cut(s)	37, 205, 958
PspPPI	RGGWCCY	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	1 cut(s)	736
SaqAI	TTAA	3 cut(s)	8, 45, 108
SatI	GCNGC	4 cut(s)	389, 571, 783, 1019
Sau3AI	GATC	4 cut(s)	70, 217, 315, 736
Sau96I	GGNCC	3 cut(s)	37, 205, 958
SchI	GAGTC	2 cut(s)	511, 985
ScrFI	CCNGG	4 cut(s)	59, 245, 453, 734
SduI	GDGCHC	1 cut(s)	889
SfcI	CTRYAG	2 cut(s)	743, 999
SfoI	GGCGCC	1 cut(s)	420
SinI	GGWCC	3 cut(s)	37, 205, 958
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	7 cut(s)	29, 99, 341, 596, 658, 868, 922
SspDI	GGCGCC	1 cut(s)	418
SspMI	CTAG	1 cut(s)	1029
StyD4I	CCNGG	4 cut(s)	57, 243, 451, 732
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	304, 524
TaiI	ACGT	2 cut(s)	401, 510
TasI	AATT	7 cut(s)	29, 99, 341, 596, 658, 868, 922
TfiI	GAWTC	4 cut(s)	84, 479, 700, 877
Tru1I	TTAA	3 cut(s)	8, 45, 108
Tru9I	TTAA	3 cut(s)	8, 45, 108
TscAI	CASTG	3 cut(s)	291, 527, 633
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	388, 570, 782, 1018
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	6 cut(s)	41, 135, 285, 707, 957, 1033
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	3 cut(s)	291, 527, 633
VpaK11BI	GGWCC	3 cut(s)	37, 205, 958
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	5 cut(s)	29, 341, 596, 658, 868
XceI	RCATGY	3 cut(s)	395, 415, 773
XmnI	GAANNNNTTC	2 cut(s)	600, 845
XspI	CTAG	1 cut(s)	1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.