Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Reverse (-)

22516525 .. 22521105

Gene Structure 4581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1107500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2775 bp

ATGAACACCATCAATTTTATCCAACCCACCGCCGCCGTTGCCTCCGTACCTCCTCCCCCTCCTCCCTCCTCTTCTTCTCTTCCCCTACGCCCCTTCTCTCACTCCCCTTCTCCTCCTCCTCTTAAACCCTCACTAAACCCTCACCCTTCTCTCTCACTCTCTCTCTCTTCTCCAAGTTCAGTCCCCAAACTCAAAACCCAAATCCAATTCCAGTACCTCCCATCCCCACAACCCCTCTTGAAGTCAAACCCTCCCAATGACCGCCACCAAACCCACAAATTCTTCCACCATTTGATCCATTTGCTCCGCCTCTCCGCCCGTCACGGCGACCGAGAGCTCGCCAGGGCCGTACACGCATCAATTCTCAAGCTTCAAGAAGATACCCATCTTGGCAATGCCCTCATTTCAGCTTATCTCAAACTGGGCCTTGTTTCGGATGCTCACCTGGTTTTCCTAAGCCTTTCCTGCCCAAATGTTGTGTCGTTCACCACTTTGGTTTCGGGTTTTTCCAAGGCGGGTCGAGAGGAGGAGGCTGTGGAGCTTTTCTTCCGGATGAGGAATTCGGGTATTATGCCCAACGAGTACAGCTTTGTTGCAATTTTAACTGCTTGTATTCGGGTTCTCGAGCTGGATTTGGGTTTGCAAGTTCATGCCTTGGTGGTCAAATTGGGGTACTTGGATTATGTTTTTGTTTCGAATGCGCTTATGGGTTTGTATGGTAAATGTTGCTGTTTGGATTATGTGCTTAAACTGTTTCATCAATTGCCCGAGAGAGACTCGGCGTCTTTGAATACTGTTATGTCGAGTTTAGCGAAGGAGTTTATGTATGATGAAGCATTTGAGTTGTTTCGTGAACTGCAGCAAACGGAGGGGTTTGGAGTCGATCATTTCACAGTTTCAACCCTTTTGACCGCCTGTTCTGGGAGCAATGCTTTCAGAGAAGGTAAAGAGGTTCATGCCCATGCTATCAAAATTGGTTTAGAGGCCAATTTGAGTGTTAGCAATGCCCTTATTAGGTTCTATGCTGTGTGTGGTAGTGTAAACGGTGTGAATGCTTTGTTTGCGAGGATGCCTGTGAAGGACGTTATTACGTGGACAGAAATGATTACAGCCTACATGAAATTTGGGTTGGTAGATTTGGCTATCAAGATGTTTGATAACATGCCCGAGCAGAATTCTGTTTCTCATAATGCTGTACTGGCTGGTTTTTGTCGAAATGGTGAAGGCTTGGGGGCTTTGGATTTATTTACAAAAATGTTGAAGGAGGGAATGGAGATGACAGACTTCACTTTGACTAGTGTTGTTAACGCTTGTGCCTTGCTTAGGGATTGTAAAACCAGTGAGCAAATCCATGGGTTCATTATCAAGTTTGATTTTGGGTCAAATGCTTGTATTGAAGCTGCATTACTTGATATGTATACAAGGTGTGGTCGGATGACAGATGCAAAAAAGTTGTTTCATCGGTGGCCGGCAGAGCAGGATAGCTCTGTACTTTTGACATCAATGATTGGTGGATATTCTCGAAATGGGCAACTGGACGAGGCAATTTCTCTTTTCCACCATCATCAATCTGAAGGAAGAATGGTTATGGATGAAGTCTTATCCACTTCACTACTTGGTCTTTGTGGAACTTTAGGGATATATGAACTGGGGAAACAAATCCACTGCCATGCTTTGAAGTGCGGTTTTCTAACTGATCTAGGAGTAGGAAATGCCACAATTAGCATGTACACTAAGTGTTGGAACATGGAAGACGGAGTCAAGTTGTTCAATACAATGCCCACTCATGACATAGTTTCATGGAATGGTTTGCTTGCTGGTTATCTTCTCCACAGACAGGGCGATGAGGCCTTGGCTGTCTGGTCAAATATGGAGAAGACTGGCATAAAACCAGATCAGATTACTTTTATTTTGATTATTTCAGCATACAGACACACTACATCCAATTTAGTTGACGCTTGTCGTAGCTTGTTTCTCTCCATGAAAACTGTTTATGACATCGAACCCACCTCAGAGCACTTTGCCTCCTTTGTTGGTGTTCTAGGGTACTGGGGTCTACTGGATGAAGCAGAGGAAACAATCAGTAAGATGCCTTTTGAGCCTGAGTTTATTGTTTGGCGAGCTTTGCTTGACAGTTGTAGAATCCAAACAAATACAACCATTGGAAAAAGGGTTGTGAAACGTATCCTTGCCATGGAGCCCAAAGATCCATCTGCCTACATACTTGTATCAAATCTCTACTCGGCATCTGGGAGATGGCACTGCTCCGAAATGGTTAGGGAGGATATGAGGAAAAAGGGGTTCCGGAAGCACCCAAGTCAAAGTTGGATCGTTCATAACAAGATACATCCATTCTATGCAAGAGATAAATCCCATCCCCAAGCAAAAGACATATATAGTGGATTGGAAATACTCATTTTAGAGTGCATAAAAGCCGGTTATGTGCCAGACACAAGCTTTGTTCTTCATGAAGTAGAAGAGCACCAGAAGAAAGATTTCTTGTACTATCACAGTGCAAAGTTAGCAGCGACCTATGGCCTACTGACCACGAAGCCTGGAAAACCAATCCGCGTAGTGAAGAATATCCTTCTTTGTGGTGACTGCCACGCGTTCTTGAAATACATGTCGATTGTCACAAGAAGAGCAATCTATGTCAGGGATGCTTCCGGATTTCATTGTATATCTAGTGGTCAGTGCTCATGCAAAGATTATTGTTTGAAGAAGATGAAGATAGGCTGCAAGAAATTTGACCCACTTTTGGCTCACTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

925

Amino Acids

103.18

Weight (kDa)

8.01

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	156 - 186	2.9e-07	PPR repeat
PPR_2	PF13041	157 - 205	1e-10	PPR repeat family
PPR_3	PF13812	157 - 204	2.9e-06	Pentatricopeptide repeat domain
PPR	PF01535	160 - 190	2.1e-07	PPR repeat
PPR_2	PF13041	259 - 306	9.3e-06	PPR repeat family
PPR_2	PF13041	392 - 439	4.5e-09	PPR repeat family
PPR_2	PF13041	597 - 643	3.3e-10	PPR repeat family
E_motif	PF20431	718 - 777	6.4e-14	E motif
DYW_deaminase	PF14432	813 - 904	5.4e-32	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	1418, 2056
AccII	CGCG	2 cut(s)	2571, 2609
AccIII	TCCGGA	3 cut(s)	549, 2304, 2666
AciI	CCGC	9 cut(s)	30, 33, 262, 307, 315, 515, 912, 1683, 2569
AclWI	GGATC	3 cut(s)	289, 2201, 2336
AcoI	YGGCCR	1 cut(s)	1466
AcsI	RAATTY	5 cut(s)	278, 559, 1121, 1174, 2744
AcuI	CTGAAG	1 cut(s)	1593
AcyI	GRCGYC	1 cut(s)	782
AdeI	CACNNNGTG	1 cut(s)	1737
AfiI	CCNNNNNNNGG	7 cut(s)	433, 921, 1014, 1323, 1837, 2194, 2758
AflIII	ACRYGT	2 cut(s)	2607, 2622
AhdI	GACNNNNNGTC	1 cut(s)	781
AhlI	ACTAGT	1 cut(s)	1295
AjnI	CCWGG	3 cut(s)	341, 444, 2554
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
Alw21I	GWGCWC	4 cut(s)	339, 2019, 2484, 2699
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	3 cut(s)	289, 2201, 2336
Ama87I	CYCGRG	3 cut(s)	623, 767, 1166
Aor13HI	TCCGGA	3 cut(s)	549, 2304, 2666
AoxI	GGCC	6 cut(s)	345, 424, 984, 1466, 1848, 2536
ApeKI	GCWGC	4 cut(s)	859, 1400, 2525, 2736
ApoI	RAATTY	5 cut(s)	278, 559, 1121, 1174, 2744
ArsI	GACNNNNNNTTYG	4 cut(s)	464, 496, 2441, 2473
Asp700I	GAANNNNTTC	1 cut(s)	2495
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	345, 424
AsuHPI	GGTGA	5 cut(s)	134, 434, 478, 1232, 2609
AsuII	TTCGAA	1 cut(s)	695
AvaI	CYCGRG	3 cut(s)	623, 767, 1166
BaeI	ACNNNNGTAYC	2 cut(s)	2038, 2071
BanII	GRGCYC	2 cut(s)	339, 2202
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BbsI	GAAGAC	2 cut(s)	1758, 1883
Bbv12I	GWGCWC	4 cut(s)	339, 2019, 2484, 2699
BbvI	GCAGC	4 cut(s)	871, 1387, 2537, 2723
BccI	CCATC	7 cut(s)	17, 229, 393, 1569, 2218, 2250, 2382
BceAI	ACGGC	3 cut(s)	20, 332, 340
BciT130I	CCWGG	3 cut(s)	343, 446, 2556
BciVI	GTATCC	1 cut(s)	2195
BcoDI	GTCTC	1 cut(s)	768
BcuI	ACTAGT	1 cut(s)	1295
BfaI	CTAG	4 cut(s)	1296, 1700, 2042, 2685
BfmI	CTRYAG	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	2195
BisI	GCNGC	5 cut(s)	33, 860, 1401, 2526, 2737
BlsI	GCNGC	5 cut(s)	34, 861, 1402, 2527, 2738
Bme1390I	CCNGG	3 cut(s)	343, 446, 2556
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmeT110I	CYCGRG	3 cut(s)	623, 767, 1166
BmgT120I	GGNCC	2 cut(s)	345, 424
BmiI	GGNNCC	2 cut(s)	2199, 2303
BmrFI	CCNGG	3 cut(s)	343, 446, 2556
BmrI	ACTGGG	3 cut(s)	431, 1658, 2059
BmsI	GCATC	7 cut(s)	365, 427, 1059, 1432, 2079, 2255, 2650
BmuI	ACTGGG	3 cut(s)	431, 1658, 2059
BoxI	GACNNNNGTC	1 cut(s)	1959
BpiI	GAAGAC	2 cut(s)	1758, 1883
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu10I	CCTNAGC	2 cut(s)	455, 1322
Bpu14I	TTCGAA	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	1092
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	782
BsaJI	CCNNGG	6 cut(s)	342, 510, 654, 1351, 1851, 2193
BsaWI	WCCGGW	3 cut(s)	549, 2304, 2666
BsaXI	ACNNNNNCTCC	4 cut(s)	809, 839, 2009, 2039
Bsc4I	CCNNNNNNNGG	7 cut(s)	433, 921, 1014, 1323, 1837, 2194, 2758
Bse118I	RCCGGY	2 cut(s)	1468, 2435
Bse1I	ACTGG	9 cut(s)	211, 426, 1203, 1338, 1539, 1653, 1885, 2054, 2064
Bse3DI	GCAATG	3 cut(s)	400, 934, 1009
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	3 cut(s)	549, 2304, 2666
BseBI	CCWGG	3 cut(s)	343, 446, 2556
BseDI	CCNNGG	6 cut(s)	342, 510, 654, 1351, 1851, 2193
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	7 cut(s)	433, 921, 1014, 1323, 1837, 2194, 2758
BseMI	GCAATG	3 cut(s)	400, 934, 1009
BseMII	CTCAG	2 cut(s)	2025, 2094
BseNI	ACTGG	9 cut(s)	211, 426, 1203, 1338, 1539, 1653, 1885, 2054, 2064
BseRI	GAGGAG	8 cut(s)	42, 51, 58, 102, 105, 108, 539, 542
BseXI	GCAGC	4 cut(s)	871, 1387, 2537, 2723
Bsh1236I	CGCG	2 cut(s)	2571, 2609
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	6 cut(s)	347, 426, 986, 1468, 1850, 2538
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	4 cut(s)	339, 2019, 2484, 2699
BsiHKCI	CYCGRG	3 cut(s)	623, 767, 1166
BsiSI	CCGG	5 cut(s)	550, 1469, 2305, 2436, 2667
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	7 cut(s)	433, 921, 1014, 1323, 1837, 2194, 2758
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	703, 1057
BsnI	GGCC	6 cut(s)	347, 426, 986, 1468, 1850, 2538
BsoBI	CYCGRG	3 cut(s)	623, 767, 1166
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	5 cut(s)	339, 2019, 2202, 2484, 2699
Bsp13I	TCCGGA	3 cut(s)	549, 2304, 2666
Bsp1407I	TGTACA	1 cut(s)	1728
Bsp143I	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
Bsp19I	CCATGG	2 cut(s)	1351, 2193
BspACI	CCGC	9 cut(s)	30, 33, 262, 307, 315, 515, 912, 1683, 2569
BspANI	GGCC	6 cut(s)	347, 426, 986, 1468, 1850, 2538
BspCNI	CTCAG	2 cut(s)	2024, 2095
BspEI	TCCGGA	3 cut(s)	549, 2304, 2666
BspFNI	CGCG	2 cut(s)	2571, 2609
BspHI	TCATGA	2 cut(s)	1786, 2467
BspLI	GGNNCC	2 cut(s)	2199, 2303
BspMAI	CTGCAG	1 cut(s)	861
BspPI	GGATC	3 cut(s)	289, 2201, 2336
BspQI	GCTCTTC	2 cut(s)	2472, 2635
BspT104I	TTCGAA	1 cut(s)	695
BsrDI	GCAATG	3 cut(s)	400, 934, 1009
BsrFI	RCCGGY	2 cut(s)	1468, 2435
BsrGI	TGTACA	1 cut(s)	1728
BsrI	ACTGG	9 cut(s)	211, 426, 1203, 1338, 1539, 1653, 1885, 2054, 2064
BssAI	RCCGGY	2 cut(s)	1468, 2435
BssECI	CCNNGG	6 cut(s)	342, 510, 654, 1351, 1851, 2193
BssMI	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
BssNAI	GTATAC	1 cut(s)	1419
BssNI	GRCGYC	1 cut(s)	782
BssT1I	CCWWGG	5 cut(s)	510, 654, 1351, 1851, 2193
Bst1107I	GTATAC	1 cut(s)	1419
Bst2UI	CCWGG	3 cut(s)	343, 446, 2556
Bst4CI	ACNGT	7 cut(s)	753, 796, 895, 1046, 1990, 2135, 2513
Bst6I	CTCTTC	5 cut(s)	76, 84, 172, 2472, 2635
BstACI	GRCGYC	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	1728
BstBAI	YACGTR	1 cut(s)	1092
BstBI	TTCGAA	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	339, 1470, 1815, 2121
BstDEI	CTNAG	5 cut(s)	455, 1322, 1734, 2011, 2103
BstDSI	CCRYGG	2 cut(s)	1351, 2193
BstENI	CCTNNNNNAGG	1 cut(s)	1321
BstFNI	CGCG	2 cut(s)	2571, 2609
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	6 cut(s)	297, 886, 1699, 1897, 2209, 2331
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 353, 465, 1061, 1199, 1474, 2098, 2125, 2522
BstNI	CCWGG	3 cut(s)	343, 446, 2556
BstNSI	RCATGY	3 cut(s)	1165, 1729, 2626
BstPAI	GACNNNNGTC	1 cut(s)	1959
BstSCI	CCNGG	3 cut(s)	341, 444, 2554
BstSFI	CTRYAG	1 cut(s)	857
BstUI	CGCG	2 cut(s)	2571, 2609
BstV1I	GCAGC	4 cut(s)	871, 1387, 2537, 2723
BstV2I	GAAGAC	2 cut(s)	1758, 1883
BstX2I	RGATCY	1 cut(s)	2206
BstYI	RGATCY	1 cut(s)	2206
BstZ17I	GTATAC	1 cut(s)	1419
BsuI	GTATCC	1 cut(s)	2195
BsuRI	GGCC	6 cut(s)	347, 426, 986, 1468, 1850, 2538
BtgI	CCRYGG	2 cut(s)	1351, 2193
BtgZI	GCGATG	1 cut(s)	1857
BtsI	GCAGTG	2 cut(s)	1663, 2260
BtsIMutI	CAGTG	5 cut(s)	1345, 1663, 2260, 2518, 2699
Cac8I	GCNNGC	4 cut(s)	339, 1470, 1815, 2121
CciI	TCATGA	2 cut(s)	1786, 2467
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	2 cut(s)	1468, 2435
Cfr13I	GGNCC	2 cut(s)	345, 424
CseI	GACGC	2 cut(s)	771, 1964
CsiI	ACCWGGT	1 cut(s)	444
DdeI	CTNAG	5 cut(s)	455, 1322, 1734, 2011, 2103
DpnI	GATC	6 cut(s)	296, 885, 1698, 1896, 2208, 2330
DpnII	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
DraIII	CACNNNGTG	1 cut(s)	1737
DriI	GACNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	1466
Eam1104I	CTCTTC	5 cut(s)	76, 84, 172, 2472, 2635
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	5 cut(s)	76, 84, 172, 2472, 2635
EciI	GGCGGA	2 cut(s)	296, 304
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	5 cut(s)	510, 654, 1351, 1851, 2193
Eco147I	AGGCCT	1 cut(s)	1850
Eco24I	GRGCYC	2 cut(s)	339, 2202
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	1593
Eco88I	CYCGRG	3 cut(s)	623, 767, 1166
EcoICRI	GAGCTC	1 cut(s)	337
EcoNI	CCTNNNNNAGG	1 cut(s)	1321
EcoRI	GAATTC	2 cut(s)	559, 1174
EcoRII	CCWGG	3 cut(s)	341, 444, 2554
EcoT14I	CCWWGG	5 cut(s)	510, 654, 1351, 1851, 2193
EcoT38I	GRGCYC	2 cut(s)	339, 2202
ErhI	CCWWGG	5 cut(s)	510, 654, 1351, 1851, 2193
FaqI	GGGAC	1 cut(s)	167
FauI	CCCGC	1 cut(s)	508
FblI	GTMKAC	2 cut(s)	1418, 2056
Fnu4HI	GCNGC	5 cut(s)	33, 860, 1401, 2526, 2737
FriOI	GRGCYC	2 cut(s)	339, 2202
Fsp4HI	GCNGC	5 cut(s)	33, 860, 1401, 2526, 2737
FspBI	CTAG	4 cut(s)	1296, 1700, 2042, 2685
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	5 cut(s)	33, 860, 1401, 2526, 2737
HaeIII	GGCC	6 cut(s)	347, 426, 986, 1468, 1850, 2538
HapII	CCGG	5 cut(s)	550, 1469, 2305, 2436, 2667
HgaI	GACGC	2 cut(s)	771, 1964
HhaI	GCGC	1 cut(s)	703
Hin1I	GRCGYC	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	2 cut(s)	1306, 1954
HindII	GTYRAC	2 cut(s)	1306, 1954
HindIII	AAGCTT	2 cut(s)	368, 2455
HinfI	GANTC	4 cut(s)	776, 879, 1758, 2142
HpaI	GTTAAC	1 cut(s)	1306
HpaII	CCGG	5 cut(s)	550, 1469, 2305, 2436, 2667
HphI	GGTGA	5 cut(s)	134, 434, 478, 1232, 2609
Hpy188I	TCNGA	7 cut(s)	436, 938, 1434, 1573, 1899, 2014, 2269
HpyCH4III	ACNGT	7 cut(s)	753, 796, 895, 1046, 1990, 2135, 2513
HpyCH4IV	ACGT	3 cut(s)	1083, 1091, 2182
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 353, 465, 1061, 1199, 1474, 2098, 2125, 2522
HpyF3I	CTNAG	5 cut(s)	455, 1322, 1734, 2011, 2103
HpySE526I	ACGT	3 cut(s)	1083, 1091, 2182
Hsp92I	GRCGYC	1 cut(s)	782
HspAI	GCGC	1 cut(s)	701
Kpn2I	TCCGGA	3 cut(s)	549, 2304, 2666
KroI	GCCGGC	1 cut(s)	1468
KroNI	GCCGGC	1 cut(s)	1470
KspAI	GTTAAC	1 cut(s)	1306
Kzo9I	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
LguI	GCTCTTC	2 cut(s)	2472, 2635
LmnI	GCTCC	5 cut(s)	309, 538, 924, 2197, 2270
Lsp1109I	GCAGC	4 cut(s)	871, 1387, 2537, 2723
LweI	GCATC	7 cut(s)	365, 427, 1059, 1432, 2079, 2255, 2650
MabI	ACCWGGT	1 cut(s)	444
MaeI	CTAG	4 cut(s)	1296, 1700, 2042, 2685
MaeII	ACGT	3 cut(s)	1083, 1091, 2182
MaeIII	GTNAC	3 cut(s)	320, 2597, 2632
MalI	GATC	6 cut(s)	296, 885, 1698, 1896, 2208, 2330
MboI	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
MfeI	CAATTG	1 cut(s)	761
MflI	RGATCY	1 cut(s)	2206
MhlI	GDGCHC	5 cut(s)	339, 2019, 2202, 2484, 2699
MluI	ACGCGT	1 cut(s)	2607
MlyI	GAGTC	3 cut(s)	770, 888, 1767
MmeI	TCCRAC	4 cut(s)	46, 1412, 1721, 2306
MroI	TCCGGA	3 cut(s)	549, 2304, 2666
MroNI	GCCGGC	1 cut(s)	1468
MroXI	GAANNNNTTC	1 cut(s)	2495
MseI	TTAA	4 cut(s)	123, 602, 747, 1305
MslI	CAYNNNNRTG	2 cut(s)	960, 1668
MspI	CCGG	5 cut(s)	550, 1469, 2305, 2436, 2667
MspR9I	CCNGG	3 cut(s)	343, 446, 2556
MunI	CAATTG	1 cut(s)	761
Mva1269I	GAATGC	2 cut(s)	703, 1057
MvaI	CCWGG	3 cut(s)	343, 446, 2556
MvnI	CGCG	2 cut(s)	2571, 2609
MwoI	GCNNNNNNNGC	9 cut(s)	38, 353, 465, 1061, 1199, 1474, 2098, 2125, 2522
NaeI	GCCGGC	1 cut(s)	1470
NcoI	CCATGG	2 cut(s)	1351, 2193
NdeII	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
NgoMIV	GCCGGC	1 cut(s)	1468
NlaIV	GGNNCC	2 cut(s)	2199, 2303
NmeAIII	GCCGAG	2 cut(s)	758, 2222
NmuCI	GTSAC	3 cut(s)	320, 2597, 2632
NspI	RCATGY	3 cut(s)	1165, 1729, 2626
NspV	TTCGAA	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	623
PagI	TCATGA	2 cut(s)	1786, 2467
PceI	AGGCCT	1 cut(s)	1850
PciI	ACATGT	1 cut(s)	2622
PciSI	GCTCTTC	2 cut(s)	2472, 2635
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 809
PctI	GAATGC	2 cut(s)	703, 1057
PdiI	GCCGGC	1 cut(s)	1470
PdmI	GAANNNNTTC	1 cut(s)	2495
PfeI	GAWTC	1 cut(s)	2142
PflFI	GACNNNGTC	1 cut(s)	1757
PkrI	GCNGC	5 cut(s)	34, 861, 1402, 2527, 2738
PleI	GAGTC	3 cut(s)	770, 887, 1766
PpsI	GAGTC	3 cut(s)	770, 887, 1766
Ppu21I	YACGTR	1 cut(s)	1092
PscI	ACATGT	1 cut(s)	2622
PshAI	GACNNNNGTC	1 cut(s)	1959
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	341, 444, 2554
PspGI	CCWGG	3 cut(s)	341, 444, 2554
PspN4I	GGNNCC	2 cut(s)	2199, 2303
PspPI	GGNCC	2 cut(s)	345, 424
PstI	CTGCAG	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	2206
PsyI	GACNNNGTC	1 cut(s)	1757
RseI	CAYNNNNRTG	2 cut(s)	960, 1668
SacI	GAGCTC	1 cut(s)	339
SapI	GCTCTTC	2 cut(s)	2472, 2635
SaqAI	TTAA	4 cut(s)	123, 602, 747, 1305
SatI	GCNGC	5 cut(s)	33, 860, 1401, 2526, 2737
Sau3AI	GATC	6 cut(s)	294, 883, 1696, 1894, 2206, 2328
Sau96I	GGNCC	2 cut(s)	345, 424
SchI	GAGTC	3 cut(s)	770, 888, 1767
ScrFI	CCNGG	3 cut(s)	343, 446, 2556
SduI	GDGCHC	5 cut(s)	339, 2019, 2202, 2484, 2699
SexAI	ACCWGGT	1 cut(s)	444
SfaNI	GCATC	7 cut(s)	365, 427, 1059, 1432, 2079, 2255, 2650
SfcI	CTRYAG	1 cut(s)	857
Sfr274I	CTCGAG	1 cut(s)	623
SfuI	TTCGAA	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	623
SmiMI	CAYNNNNRTG	2 cut(s)	960, 1668
SmlI	CTYRAG	2 cut(s)	365, 623
SmoI	CTYRAG	2 cut(s)	365, 623
SpeI	ACTAGT	1 cut(s)	1295
SseBI	AGGCCT	1 cut(s)	1850
SsiI	CCGC	9 cut(s)	30, 33, 262, 307, 315, 515, 912, 1683, 2569
SspMI	CTAG	4 cut(s)	1296, 1700, 2042, 2685
SstI	GAGCTC	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	1850
StyD4I	CCNGG	3 cut(s)	341, 444, 2554
StyI	CCWWGG	5 cut(s)	510, 654, 1351, 1851, 2193
TaaI	ACNGT	7 cut(s)	753, 796, 895, 1046, 1990, 2135, 2513
TaiI	ACGT	3 cut(s)	1086, 1094, 2185
TaqI	TCGA	9 cut(s)	520, 624, 695, 803, 882, 1213, 1522, 2001, 2627
TaqII	GACCGA	1 cut(s)	345
TatI	WGTACW	5 cut(s)	582, 1195, 1489, 1728, 2502
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	2142
Tru1I	TTAA	4 cut(s)	123, 602, 747, 1305
Tru9I	TTAA	4 cut(s)	123, 602, 747, 1305
TscAI	CASTG	5 cut(s)	1345, 1670, 2267, 2518, 2699
TseFI	GTSAC	3 cut(s)	320, 2597, 2632
TseI	GCWGC	4 cut(s)	859, 1400, 2525, 2736
Tsp45I	GTSAC	3 cut(s)	320, 2597, 2632
TspGWI	ACGGA	3 cut(s)	34, 881, 1770
TspRI	CASTG	5 cut(s)	1345, 1670, 2267, 2518, 2699
Tth111I	GACNNNGTC	1 cut(s)	1757
XagI	CCTNNNNNAGG	1 cut(s)	1321
XapI	RAATTY	5 cut(s)	278, 559, 1121, 1174, 2744
XceI	RCATGY	3 cut(s)	1165, 1729, 2626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2322
XhoI	CTCGAG	1 cut(s)	623
XmiI	GTMKAC	2 cut(s)	1418, 2056
XmnI	GAANNNNTTC	1 cut(s)	2495
XspI	CTAG	4 cut(s)	1296, 1700, 2042, 2685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.