Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

17219842 .. 17222890

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGAACACCGTTATCCAACCCGCCTTCGCCGCCTTACCTCCTCCGCTCTCTCAGTACTACCCTCCAAAACCACCACCGCACTCCTCTCTTTCTCTCTCTCCCTCTAGACCCAAACCCAAAACCCCCCTCAACTTCTCCACCCAATCCCTCCAACCCCTTTTCACCACTCCACACCCTCCCAATCCCAATGGCTCTCACCAAACCCACTCTCTCTTCTCCCATCTCCTCCATCTGCTCCGCCTCTCGTCCCGCCACGCCGACCCCGAGCTCGCCAGGGCCGTCCACGCCTCCGTTCTCAAGCTCGAAAACGACACCCATCTCGGCAACGCCCTTGTTTCGGCTTATCTCCAGCTGGGTCTCGTTCCCGACGCTTACCGGGTCTTTCAGAGCCTCCCATGCCCCAATGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGAGGAGGCGGTGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGGGTCTGCAGGTTCATGCCTTGGCGGCTAAGATGGGTTACTTGGATTGTGTTTTTGTTTCCAATGCCGTGATGGGTCTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCACAGAGACATTGCGTCTTGGAATACTGCTATGGCGAGTCTAGCGAATGAGTTTATGTATGATGAAGTGTTTGAGTTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTGGCGGACTATATCACGCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCACGCCTATGCTGTCAAGACTGGTTTGGAGGGCAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGTTAGGGATGTTATTACTTGGACGGAGATGATTACTGCCTACATGGACTTCGGGTTGGTGGGGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTGTTTTTCTTATAATGCTCTAATGGCTGGCTTTTGTCGAAATGGGGAAGGTTTGAGGGCACTGGATTTATTTATGAGAATGGTGGAGGAGGGTATGGAGCTGACAGAATTCACTTTGACTAGTGTTGTTGGTGCTTGTGGCTTGCTCATGGACTGCAAAACTAGTGAGCAAATTCATGGGTTTGTTGTCAAGTTTGGTTTTGATTCAAATGCTTGTATTGGAGCTGCGTTGCTTGATATGTGCACAAGGTGTGATCAAATGGGAGATGCCAAGAAACTGTTTCACCAGTGGCCAAGTGAGCAGGAAAAATCTATAATTTTGACTTCACTTATATGTGGGTATACTCGAACTGGGCAACTGGATGAGGCAATTTCTATTTTCCACCGATATCAATCAGAAGGAATAATGGTTGTGGATGAAGTTGCATCAACTTCACTACTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCGCATGCTATCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACGATGAGCATGTACACAAAGTGCTGGAACATGGATGAGGGAATCAAAATATTCAGTATGATGTCCACTCGCGACATAGTTTCATGGAATGTTTTGCTGGCTGGTTATCTTCTGCATAGACAGGGTGATGACGCCTTAGCGGTCTGGTCAAAGATGGAGAAGACTGGCATAAAACCAGACAAGATTACCTTTATTTTGATCATTTCAGCACACAGACATACTAACTCCAATTCTGTTGACAATTGTCGAAGTTTGTTTCTCTCCATGAAAGCAGTTTATGACATTGAGCCCACTTCAGAGCATTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTGAGCCTGAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCCGTATGAATGCAACTGTTGGAAAAAGGGTTGTGAAACGTATACTTGCGATGGAGCCCAAAGATCCATCTAGCTACATACTCATATCAAATCTGTATTCAGCATCTGGGAGATGGCATTGCTCTGAAATGGTGAGAGATGACATGAGAAAAAAGGGGTTCTGGAAGCACCCAGGTCGAAGTTGGTTCATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCACCCCCAGGCGAAAGACATATATAGTGGATTAGAAATACTTATTGTAGAATGCATGAAAGCTGGTTACGTTCCAGACACAAGCTTTGTTCTTCATGAAGTGGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTAGCAGCCACCTATGGGCTTCTGACCAACAAACCAGGAAAACCAATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATACCTTCTTAAAGTACTTGTCCGTTGTTGCCAAGAGAGCATTACATGTAAGAGATGCTTCCGGATTTCACTATTTTTCAAATGGTCAGTGCTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

883

Amino Acids

98.53

Weight (kDa)

6.27

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	133 - 163	3.7e-07	PPR repeat
PPR_2	PF13041	134 - 182	3e-12	PPR repeat family
PPR_3	PF13812	134 - 181	2.7e-07	Pentatricopeptide repeat domain
PPR	PF01535	137 - 167	4.8e-08	PPR repeat
PPR_2	PF13041	369 - 415	6.8e-09	PPR repeat family
PPR	PF01535	371 - 400	4.3e-07	PPR repeat
PPR_2	PF13041	573 - 619	7.3e-11	PPR repeat family
E_motif	PF20431	698 - 753	5.5e-14	E motif
DYW_deaminase	PF14432	791 - 883	9.3e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
Acc36I	ACCTGC	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	1448, 2116
AccII	CGCG	1 cut(s)	1719
AccIII	TCCGGA	1 cut(s)	2600
AclWI	GGATC	1 cut(s)	2132
AcoI	YGGCCR	2 cut(s)	448, 1397
AcsI	RAATTY	2 cut(s)	1214, 1278
AcuI	CTGAAG	2 cut(s)	1926, 2055
AcyI	GRCGYC	1 cut(s)	1779
AdeI	CACNNNGTG	2 cut(s)	1356, 1668
AfaI	GTAC	7 cut(s)	56, 515, 850, 1661, 1979, 2438, 2555
AfiI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	2584
AgsI	TTSAA	2 cut(s)	1314, 2619
AhdI	GACNNNNNGTC	1 cut(s)	712
AhlI	ACTAGT	2 cut(s)	1226, 1268
AjnI	CCWGG	4 cut(s)	272, 2245, 2313, 2488
Alw21I	GWGCWC	3 cut(s)	270, 1352, 2633
Alw26I	GTCTC	3 cut(s)	362, 699, 2526
Alw44I	GTGCAC	1 cut(s)	1348
AlwI	GGATC	1 cut(s)	2132
AlwNI	CAGNNNCTG	1 cut(s)	2180
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	2600
AoxI	GGCC	3 cut(s)	276, 448, 1397
ApaLI	GTGCAC	1 cut(s)	1348
ApeKI	GCWGC	3 cut(s)	983, 1331, 2459
ApoI	RAATTY	2 cut(s)	1214, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	2375, 2407
Asp700I	GAANNNNTTC	1 cut(s)	2429
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	276, 556
AsuC2I	CCSGG	2 cut(s)	377, 452
AsuHPI	GGTGA	8 cut(s)	154, 188, 409, 809, 968, 1382, 1784, 2218
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	2 cut(s)	1168, 1352
BaeI	ACNNNNGTAYC	2 cut(s)	1969, 2002
BalI	TGGCCA	1 cut(s)	1399
BanII	GRGCYC	3 cut(s)	270, 1938, 2133
BbsI	GAAGAC	1 cut(s)	1814
Bbv12I	GWGCWC	3 cut(s)	270, 1352, 2633
BbvI	GCAGC	3 cut(s)	970, 1318, 2471
BceAI	ACGGC	2 cut(s)	263, 617
BcgI	CGANNNNNNTGC	2 cut(s)	2231, 2265
BciT130I	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BciVI	GTATCC	1 cut(s)	1999
BclI	TGATCA	3 cut(s)	1087, 1360, 1845
BcnI	CCSGG	2 cut(s)	377, 452
BcoDI	GTCTC	3 cut(s)	362, 699, 2526
BcuI	ACTAGT	2 cut(s)	1226, 1268
BfaI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
BfmI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	1999
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
BlsI	GCNGC	5 cut(s)	31, 592, 985, 1333, 2461
BmcAI	AGTACT	2 cut(s)	56, 2555
Bme1390I	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
Bme18I	GGWCC	1 cut(s)	556
BmeRI	GACNNNNNGTC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	276, 556
BmiI	GGNNCC	1 cut(s)	2130
BmrFI	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
BmrI	ACTGGG	3 cut(s)	1467, 1589, 1990
BmsI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
BmuI	ACTGGG	3 cut(s)	1467, 1589, 1990
BoxI	GACNNNNGTC	1 cut(s)	1890
BpiI	GAAGAC	1 cut(s)	1814
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	1783
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	377, 452
BsaBI	GATNNNNATC	1 cut(s)	1498
BsaHI	GRCGYC	1 cut(s)	1779
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BsaWI	WCCGGW	2 cut(s)	431, 2600
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
Bse3DI	GCAATG	3 cut(s)	708, 940, 2191
Bse8I	GATNNNNATC	1 cut(s)	1498
BseAI	TCCGGA	1 cut(s)	2600
BseBI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BseDI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BseGI	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BseJI	GATNNNNATC	1 cut(s)	1498
BseLI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
BseMI	GCAATG	3 cut(s)	708, 940, 2191
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	6 cut(s)	30, 73, 215, 473, 502, 1208
BseSI	GKGCMC	2 cut(s)	1168, 1352
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	970, 1318, 2471
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	1719
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	278, 450, 1399
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	270, 1352, 2633
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	5 cut(s)	376, 432, 447, 451, 2601
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
BsmAI	GTCTC	3 cut(s)	362, 699, 2526
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	2 cut(s)	2089, 2363
BsnI	GGCC	3 cut(s)	278, 450, 1399
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
Bsp13I	TCCGGA	1 cut(s)	2600
Bsp1407I	TGTACA	1 cut(s)	1659
Bsp143I	GATC	4 cut(s)	1087, 1360, 1845, 2137
Bsp68I	TCGCGA	1 cut(s)	1719
BspANI	GGCC	3 cut(s)	278, 450, 1399
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	2600
BspFNI	CGCG	1 cut(s)	1719
BspHI	TCATGA	2 cut(s)	1573, 2401
BspLI	GGNNCC	1 cut(s)	2130
BspMAI	CTGCAG	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	2132
BspQI	GCTCTTC	1 cut(s)	2406
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	708, 940, 2191
BsrGI	TGTACA	1 cut(s)	1659
BssECI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BssMI	GATC	4 cut(s)	1087, 1360, 1845, 2137
BssNAI	GTATAC	2 cut(s)	1449, 2117
BssNI	GRCGYC	1 cut(s)	1779
BssT1I	CCWWGG	1 cut(s)	585
Bst1107I	GTATAC	2 cut(s)	1449, 2117
Bst2UI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
Bst4CI	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
Bst6I	CTCTTC	3 cut(s)	218, 450, 2406
BstACI	GRCGYC	1 cut(s)	1779
BstAFI	CTTAAG	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	1659
BstC8I	GCNNGC	6 cut(s)	270, 1135, 1250, 1602, 1746, 2052
BstDEI	CTNAG	3 cut(s)	51, 594, 1783
BstF5I	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BstFNI	CGCG	1 cut(s)	1719
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	1090, 1363, 1848, 2140
BstMAI	GTCTC	3 cut(s)	362, 699, 2526
BstMBI	GATC	4 cut(s)	1087, 1360, 1845, 2137
BstMCI	CGRYCG	1 cut(s)	451
BstNI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BstNSI	RCATGY	3 cut(s)	1604, 1660, 2588
BstPAI	GACNNNNGTC	1 cut(s)	1890
BstSCI	CCNGG	6 cut(s)	272, 375, 450, 2245, 2313, 2488
BstSFI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
BstSLI	GKGCMC	2 cut(s)	1168, 1352
BstUI	CGCG	1 cut(s)	1719
BstV1I	GCAGC	3 cut(s)	970, 1318, 2471
BstV2I	GAAGAC	1 cut(s)	1814
BstX2I	RGATCY	1 cut(s)	2137
BstYI	RGATCY	1 cut(s)	2137
BstZ17I	GTATAC	2 cut(s)	1449, 2117
BstZI	CGGCCG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	1999
BsuRI	GGCC	3 cut(s)	278, 450, 1399
BtgZI	GCGATG	1 cut(s)	2138
BtsCI	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BtsIMutI	CAGTG	4 cut(s)	1166, 1400, 2452, 2633
BtuMI	TCGCGA	1 cut(s)	1719
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	6 cut(s)	270, 1135, 1250, 1602, 1746, 2052
CaiI	CAGNNNCTG	1 cut(s)	2180
CciI	TCATGA	2 cut(s)	1573, 2401
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	276, 556
CseI	GACGC	3 cut(s)	377, 702, 1787
Csp6I	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
CviQI	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
DdeI	CTNAG	3 cut(s)	51, 594, 1783
DpnI	GATC	4 cut(s)	1089, 1362, 1847, 2139
DpnII	GATC	4 cut(s)	1087, 1360, 1845, 2137
DraIII	CACNNNGTG	2 cut(s)	1356, 1668
DriI	GACNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	2 cut(s)	448, 1397
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	218, 450, 2406
Eam1105I	GACNNNNNGTC	1 cut(s)	712
EarI	CTCTTC	3 cut(s)	218, 450, 2406
EciI	GGCGGA	2 cut(s)	227, 827
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	3 cut(s)	270, 1938, 2133
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	1496
Eco47I	GGWCC	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	1926, 2055
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	1214
EcoRII	CCWGG	4 cut(s)	272, 2245, 2313, 2488
EcoRV	GATATC	1 cut(s)	1496
EcoT14I	CCWWGG	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	2363
EcoT38I	GRGCYC	3 cut(s)	270, 1938, 2133
ErhI	CCWWGG	1 cut(s)	585
FalI	AAGNNNNNCTT	8 cut(s)	1820, 1852, 2009, 2041, 2417, 2449, 2581, 2613
FaqI	GGGAC	1 cut(s)	232
FauI	CCCGC	2 cut(s)	28, 257
FbaI	TGATCA	3 cut(s)	1087, 1360, 1845
FblI	GTMKAC	2 cut(s)	1448, 2116
Fnu4HI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
FokI	GGATG	8 cut(s)	496, 1012, 1025, 1481, 1535, 1694, 2006, 2268
FriOI	GRGCYC	3 cut(s)	270, 1938, 2133
Fsp4HI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
FspBI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	278, 450, 1399
HapII	CCGG	5 cut(s)	376, 432, 447, 451, 2601
HgaI	GACGC	3 cut(s)	377, 702, 1787
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	1779
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	1885
HindII	GTYRAC	1 cut(s)	1885
HindIII	AAGCTT	1 cut(s)	2389
HinfI	GANTC	4 cut(s)	736, 1310, 1689, 2073
HpaII	CCGG	5 cut(s)	376, 432, 447, 451, 2601
HphI	GGTGA	8 cut(s)	154, 188, 409, 809, 968, 1382, 1784, 2218
Hpy166II	GTNNAC	8 cut(s)	283, 886, 1350, 1449, 1662, 1713, 1885, 2117
Hpy188I	TCNGA	8 cut(s)	387, 549, 1092, 1504, 1945, 2200, 2421, 2478
Hpy8I	GTNNAC	8 cut(s)	283, 886, 1350, 1449, 1662, 1713, 1885, 2117
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	7 cut(s)	34, 866, 1148, 1499, 2419, 2531, 2554
HpyCH4III	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
HpyCH4IV	ACGT	2 cut(s)	2113, 2376
HpyF3I	CTNAG	3 cut(s)	51, 594, 1783
HpySE526I	ACGT	2 cut(s)	2113, 2376
Hsp92I	GRCGYC	1 cut(s)	1779
HspAI	GCGC	1 cut(s)	674
Kpn2I	TCCGGA	1 cut(s)	2600
Ksp22I	TGATCA	3 cut(s)	1087, 1360, 1845
Kzo9I	GATC	4 cut(s)	1087, 1360, 1845, 2137
LguI	GCTCTTC	1 cut(s)	2406
LmnI	GCTCC	5 cut(s)	240, 469, 1204, 1328, 2128
Lsp1109I	GCAGC	3 cut(s)	970, 1318, 2471
LweI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
MaeI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
MaeII	ACGT	2 cut(s)	2113, 2376
MaeIII	GTNAC	2 cut(s)	602, 2372
MalI	GATC	4 cut(s)	1089, 1362, 1847, 2139
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	1087, 1360, 1845, 2137
MboII	GAAGA	8 cut(s)	205, 467, 1748, 1819, 2390, 2423, 2434, 2524
MfeI	CAATTG	1 cut(s)	1888
MflI	RGATCY	1 cut(s)	2137
MhlI	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
MlsI	TGGCCA	1 cut(s)	1399
MluNI	TGGCCA	1 cut(s)	1399
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	4 cut(s)	40, 175, 1971, 2074
Mox20I	TGGCCA	1 cut(s)	1399
Mph1103I	ATGCAT	1 cut(s)	2363
MroI	TCCGGA	1 cut(s)	2600
MroXI	GAANNNNTTC	1 cut(s)	2429
MscI	TGGCCA	1 cut(s)	1399
MseI	TTAA	2 cut(s)	678, 2549
MslI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
Msp20I	TGGCCA	1 cut(s)	1399
MspA1I	CMGCKG	1 cut(s)	352
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	5 cut(s)	376, 432, 447, 451, 2601
MspR9I	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
MunI	CAATTG	1 cut(s)	1888
Mva1269I	GAATGC	2 cut(s)	2089, 2363
MvaI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
MvnI	CGCG	1 cut(s)	1719
NciI	CCSGG	2 cut(s)	377, 452
NdeII	GATC	4 cut(s)	1087, 1360, 1845, 2137
NlaIV	GGNNCC	1 cut(s)	2130
NmeAIII	GCCGAG	1 cut(s)	300
NruI	TCGCGA	1 cut(s)	1719
NsiI	ATGCAT	1 cut(s)	2363
NspI	RCATGY	3 cut(s)	1604, 1660, 2588
PaeI	GCATGC	1 cut(s)	1604
PagI	TCATGA	2 cut(s)	1573, 2401
PciI	ACATGT	1 cut(s)	2584
PciSI	GCTCTTC	1 cut(s)	2406
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 276
PctI	GAATGC	2 cut(s)	2089, 2363
PdmI	GAANNNNTTC	1 cut(s)	2429
PfeI	GAWTC	3 cut(s)	1310, 1689, 2073
PkrI	GCNGC	5 cut(s)	31, 592, 985, 1333, 2461
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
PscI	ACATGT	1 cut(s)	2584
PshAI	GACNNNNGTC	1 cut(s)	1890
PsiI	TTATAA	1 cut(s)	1119
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	272, 2245, 2313, 2488
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	272, 2245, 2313, 2488
PspN4I	GGNNCC	1 cut(s)	2130
PspPI	GGNCC	2 cut(s)	276, 556
PstI	CTGCAG	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	2180
PsuI	RGATCY	1 cut(s)	2137
PvuII	CAGCTG	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	1719
RsaI	GTAC	7 cut(s)	56, 515, 850, 1661, 1979, 2438, 2555
RsaNI	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
RseI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
SacI	GAGCTC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	2406
SaqAI	TTAA	2 cut(s)	678, 2549
SatI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
Sau3AI	GATC	4 cut(s)	1087, 1360, 1845, 2137
Sau96I	GGNCC	2 cut(s)	276, 556
ScaI	AGTACT	2 cut(s)	56, 2555
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
SduI	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
SfaNI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
SfcI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
SmlI	CTYRAG	2 cut(s)	296, 677
SmoI	CTYRAG	2 cut(s)	296, 677
SpeI	ACTAGT	2 cut(s)	1226, 1268
SphI	GCATGC	1 cut(s)	1604
SspI	AATATT	1 cut(s)	1698
SspMI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	6 cut(s)	272, 375, 450, 2245, 2313, 2488
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
TaiI	ACGT	2 cut(s)	2116, 2379
TaqI	TCGA	9 cut(s)	303, 561, 830, 993, 1144, 1453, 1894, 2251, 2503
TatI	WGTACW	6 cut(s)	54, 513, 848, 1659, 2436, 2553
TauI	GCSGC	2 cut(s)	32, 593
TfiI	GAWTC	3 cut(s)	1310, 1689, 2073
Tru1I	TTAA	2 cut(s)	678, 2549
Tru9I	TTAA	2 cut(s)	678, 2549
TscAI	CASTG	4 cut(s)	1173, 1400, 2452, 2633
TseI	GCWGC	3 cut(s)	983, 1331, 2459
TspGWI	ACGGA	4 cut(s)	280, 1043, 2066, 2551
TspRI	CASTG	4 cut(s)	1173, 1400, 2452, 2633
Vha464I	CTTAAG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	1348
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	1214, 1278
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	3 cut(s)	1604, 1660, 2588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 2253
XmiI	GTMKAC	2 cut(s)	1448, 2116
XmnI	GAANNNNTTC	1 cut(s)	2429
XspI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
ZrmI	AGTACT	2 cut(s)	56, 2555
Zsp2I	ATGCAT	1 cut(s)	2363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.