Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Reverse (-)

32254744 .. 32257960

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGGATTGGGTGTTCGACGAGGCCCTTAGGCATGACAATGGTTCCTACTGTGTTGTTGTGAGTTGCACAGAAAATGGTCATGATGAACTAGGTAATGAAAAAGCAAAACGGAAACGTAGTCCCGGCGCGTGGGCCGTGCACGCCTCCGTTCTCAAGCTCGAAAACGATACCCATCTCGGCAACGCTCTTGTTTCAGCTTATCTCAAGCTGGGTCTCGTTCCCGACGCTTACCGGGTTTTTCAGAGCCTCCCATGCCCCAATGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGAACAGGCGGTGGAGATTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGGGTCTGCAGGTTCATGCCTTGGCGGCTAAGATGGGTTACTTGGATTGTGTTTTTGTTTCCAATGCCGTGATGGGTTTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCACAGAGACATTGCGTCTTGGAATACTGTTATGGCGAGTTTAGCGAATGAGTTTATGCATGATGAAGTGTTTGAATTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTAGCGGACTATATCACTCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCACGCCTATGCTGTCAAGACTGGTTTGGAGGGCAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGCGAGGGATGTTATTACTTGGACGGAGATGATTACTGCCTACATGGACTTTGGGTTGGTGGGGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTGCTTTTCTTATAATGCTCTAATGGCTGGCTTTTGTCGAAATGGGGAAGGTTTGAGGGCACTGGAATTATTTATGAGAATGGTGGAGGAGGGTATGGAGCTGACAGAATTCACTTTGACTAGTGTTGTTGGTGCTTGTGGATTGCTCATGGACTGCAAAACCAGTGAGCAAATTCATGGGTTTGTTGTCAAGTTTGGTTTTGATTCAAATGCTTGTATTGGAGCTGCGTTGCTTGATATGTGCACAAGGTGTGATCGAATGGGAGATGCCAAGAAACTGTTTCACCAGTGGCCAAGTGAGCAGGAAAAATCTATAATTTTGACTTCACTTATATGTGGGTATACTCGAACTGGGCAACTGGATGAGGCAATTTCTATTTTCCACCGATATCAATCAGAAGGAATAATGGTTGTGGATGAAGTTGCATCAACTTCACTACTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCGCATGCTATCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACAATGAGCATGTACACGAAGTGCTGGAACATGGATGAGGGAATCAAAATATTCAGTATGATGTCCGCTCGCGACATAGTTTCATGGAATGTTTTGCTGGCTGGTTATCTTCTGCATAGACAGGGTGATGAGGCCTTAGCTGTCTGGTCAAAGATGGAGAAGACTGGCATAAAACCAGACAAGATTACTTTTATTTTGATCATTTCAGCACACAGACATACTAACTCCAATTCTGTTGACAATTGTCGAAGTTTGTTTCTCTCCATGAAAGCAGTTTATGGCATTGAGCCCACTTCAGAGCATTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTGAGCCTCAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCCGTATGAATGCAACTGTTGGAAAAAGGGTTGTGAAACGTATACTTGCGATGGAGCCCAAAGATCCATCTAGCTACATACTCATATCAAATCTGTATTCAGCATCTGGGAGATGGCATTGCTCTGAAATGGTGAGAGATGACATGAGAAAAAAAGGGTTCTGGAAGCACCCAGGTCGAAGTTGGTTCATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCATCCCCAGGCGAAAGACATATATAGCGGATTAGAAATACTTATTGTAGAATGCATGAAAGCAGGTTACGTTCCAGACACAAGCTTTGTTCTTCATGAAGTGGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTAGCAGCCACCTATGGGCTTCTGACCAACAAACCAGGAAAACCAATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATGCCTTCTTAAAGTACTTGTCCATTGTTGCAAAGAGAGCAATACATGTAAGAGATGCTTCCGGATTTCACTATTTTTCAAATGGTCAGTGCTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

835

Amino Acids

93.3

Weight (kDa)

6.1

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	85 - 115	8.6e-06	PPR repeat
PPR_2	PF13041	86 - 134	1.6e-11	PPR repeat family
PPR_3	PF13812	86 - 133	1.9e-08	Pentatricopeptide repeat domain
PPR	PF01535	89 - 119	8.9e-07	PPR repeat
PPR_2	PF13041	321 - 367	6.7e-09	PPR repeat family
PPR	PF01535	323 - 352	2.7e-07	PPR repeat
PPR_2	PF13041	525 - 571	4e-11	PPR repeat family
E_motif	PF20431	650 - 705	5.2e-14	E motif
DYW_deaminase	PF14432	743 - 835	3.3e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	975
Acc36I	ACCTGC	2 cut(s)	421, 2216
AccBSI	CCGCTC	1 cut(s)	1571
AccI	GTMKAC	2 cut(s)	1304, 1972
AccII	CGCG	2 cut(s)	128, 1575
AccIII	TCCGGA	1 cut(s)	2456
AciI	CCGC	6 cut(s)	276, 320, 446, 668, 1569, 2190
AclWI	GGATC	1 cut(s)	1988
AcoI	YGGCCR	2 cut(s)	304, 1253
AcsI	RAATTY	2 cut(s)	1070, 1134
AcuI	CTGAAG	1 cut(s)	1782
AdeI	CACNNNGTG	2 cut(s)	1212, 1524
AfaI	GTAC	6 cut(s)	371, 706, 1517, 1835, 2294, 2411
AfiI	CCNNNNNNNGG	5 cut(s)	129, 262, 421, 2170, 2325
AflII	CTTAAG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	2440
AgsI	TTSAA	3 cut(s)	629, 1170, 2475
AhdI	GACNNNNNGTC	1 cut(s)	568
AhlI	ACTAGT	1 cut(s)	1082
AjnI	CCWGG	3 cut(s)	2101, 2169, 2344
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	3 cut(s)	141, 1208, 2489
Alw26I	GTCTC	3 cut(s)	218, 555, 2382
Alw44I	GTGCAC	2 cut(s)	137, 1204
AlwI	GGATC	1 cut(s)	1988
AlwNI	CAGNNNCTG	1 cut(s)	2036
Aor13HI	TCCGGA	1 cut(s)	2456
AoxI	GGCC	5 cut(s)	21, 132, 304, 1253, 1635
ApaLI	GTGCAC	2 cut(s)	137, 1204
ApeKI	GCWGC	3 cut(s)	839, 1187, 2315
ApoI	RAATTY	2 cut(s)	1070, 1134
ArsI	GACNNNNNNTTYG	2 cut(s)	2231, 2263
Asp700I	GAANNNNTTC	1 cut(s)	2285
AspLEI	GCGC	2 cut(s)	128, 532
AspS9I	GGNCC	3 cut(s)	22, 132, 412
AsuC2I	CCSGG	3 cut(s)	123, 233, 308
AsuHPI	GGTGA	6 cut(s)	265, 665, 824, 1238, 1640, 2074
AvaII	GGWCC	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	26
BaeGI	GKGCMC	3 cut(s)	141, 1024, 1208
BaeI	ACNNNNGTAYC	2 cut(s)	1825, 1858
BalI	TGGCCA	1 cut(s)	1255
BanII	GRGCYC	2 cut(s)	1794, 1989
BbsI	GAAGAC	1 cut(s)	1670
Bbv12I	GWGCWC	3 cut(s)	141, 1208, 2489
BbvI	GCAGC	3 cut(s)	826, 1174, 2327
BccI	CCATC	9 cut(s)	180, 448, 487, 650, 1651, 1975, 2005, 2037, 2172
BceAI	ACGGC	2 cut(s)	119, 473
BcgI	CGANNNNNNTGC	2 cut(s)	2087, 2121
BciT130I	CCWGG	3 cut(s)	2103, 2171, 2346
BciVI	GTATCC	1 cut(s)	1855
BclI	TGATCA	2 cut(s)	943, 1701
BcnI	CCSGG	3 cut(s)	123, 233, 308
BcoDI	GTCTC	3 cut(s)	218, 555, 2382
BcuI	ACTAGT	1 cut(s)	1082
BfaI	CTAG	5 cut(s)	89, 1083, 1478, 2001, 2312
BfmI	CTRYAG	4 cut(s)	334, 428, 1419, 1924
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	2 cut(s)	421, 2216
BfuI	GTATCC	1 cut(s)	1855
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	4 cut(s)	447, 840, 1188, 2316
BlsI	GCNGC	4 cut(s)	448, 841, 1189, 2317
BmcAI	AGTACT	1 cut(s)	2411
Bme1390I	CCNGG	6 cut(s)	123, 233, 308, 2103, 2171, 2346
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	22, 132, 412
BmiI	GGNNCC	2 cut(s)	43, 1986
BmrFI	CCNGG	6 cut(s)	123, 233, 308, 2103, 2171, 2346
BmrI	ACTGGG	3 cut(s)	1323, 1445, 1846
BmsI	GCATC	8 cut(s)	846, 939, 1219, 1397, 1866, 2042, 2281, 2440
BmuI	ACTGGG	3 cut(s)	1323, 1445, 1846
BoxI	GACNNNNGTC	1 cut(s)	1746
BpiI	GAAGAC	1 cut(s)	1670
Bpu10I	CCTNAGC	1 cut(s)	1639
BpuEI	CTTGAG	3 cut(s)	137, 188, 1875
BpuMI	CCSGG	3 cut(s)	123, 233, 308
BsaBI	GATNNNNATC	2 cut(s)	171, 1354
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	441, 2101, 2169
BsaWI	WCCGGW	2 cut(s)	287, 2456
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	5 cut(s)	129, 262, 421, 2170, 2325
Bse21I	CCTNAGG	1 cut(s)	26
Bse3DI	GCAATG	3 cut(s)	564, 796, 2047
Bse8I	GATNNNNATC	2 cut(s)	171, 1354
BseAI	TCCGGA	1 cut(s)	2456
BseBI	CCWGG	3 cut(s)	2103, 2171, 2346
BseDI	CCNNGG	3 cut(s)	441, 2101, 2169
BseGI	GGATG	9 cut(s)	345, 861, 874, 1330, 1384, 1543, 1855, 2137, 2164
BseJI	GATNNNNATC	2 cut(s)	171, 1354
BseLI	CCNNNNNNNGG	5 cut(s)	129, 262, 421, 2170, 2325
BseMI	GCAATG	3 cut(s)	564, 796, 2047
BseRI	GAGGAG	2 cut(s)	358, 1064
BseSI	GKGCMC	3 cut(s)	141, 1024, 1208
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	826, 1174, 2327
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	128, 1575
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	5 cut(s)	23, 134, 306, 1255, 1637
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	3 cut(s)	141, 1208, 2489
BsiSI	CCGG	6 cut(s)	123, 232, 288, 303, 307, 2457
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	5 cut(s)	129, 262, 421, 2170, 2325
BsmAI	GTCTC	3 cut(s)	218, 555, 2382
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	2 cut(s)	1945, 2219
BsnI	GGCC	5 cut(s)	23, 134, 306, 1255, 1637
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	6 cut(s)	141, 1024, 1208, 1794, 1989, 2489
Bsp13I	TCCGGA	1 cut(s)	2456
Bsp1407I	TGTACA	1 cut(s)	1515
Bsp143I	GATC	4 cut(s)	943, 1216, 1701, 1993
Bsp68I	TCGCGA	1 cut(s)	1575
BspACI	CCGC	6 cut(s)	276, 320, 446, 668, 1569, 2190
BspANI	GGCC	5 cut(s)	23, 134, 306, 1255, 1637
BspEI	TCCGGA	1 cut(s)	2456
BspFNI	CGCG	2 cut(s)	128, 1575
BspHI	TCATGA	3 cut(s)	79, 1429, 2257
BspLI	GGNNCC	2 cut(s)	43, 1986
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	2 cut(s)	421, 2216
BspPI	GGATC	1 cut(s)	1988
BspQI	GCTCTTC	1 cut(s)	2262
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	1571
BsrDI	GCAATG	3 cut(s)	564, 796, 2047
BsrGI	TGTACA	1 cut(s)	1515
BssECI	CCNNGG	3 cut(s)	441, 2101, 2169
BssMI	GATC	4 cut(s)	943, 1216, 1701, 1993
BssNAI	GTATAC	2 cut(s)	1305, 1973
BssT1I	CCWWGG	1 cut(s)	441
Bst1107I	GTATAC	2 cut(s)	1305, 1973
Bst2UI	CCWGG	3 cut(s)	2103, 2171, 2346
Bst4CI	ACNGT	6 cut(s)	50, 583, 691, 1242, 1948, 2303
Bst6I	CTCTTC	1 cut(s)	2262
BstAFI	CTTAAG	1 cut(s)	533
BstAUI	TGTACA	1 cut(s)	1515
BstC8I	GCNNGC	7 cut(s)	141, 861, 991, 1458, 1573, 1602, 1908
BstDEI	CTNAG	3 cut(s)	26, 450, 1639
BstF5I	GGATG	9 cut(s)	345, 861, 874, 1330, 1384, 1543, 1855, 2137, 2164
BstFNI	CGCG	2 cut(s)	128, 1575
BstHHI	GCGC	2 cut(s)	128, 532
BstKTI	GATC	4 cut(s)	946, 1219, 1704, 1996
BstMAI	GTCTC	3 cut(s)	218, 555, 2382
BstMBI	GATC	4 cut(s)	943, 1216, 1701, 1993
BstMCI	CGRYCG	1 cut(s)	307
BstNI	CCWGG	3 cut(s)	2103, 2171, 2346
BstNSI	RCATGY	3 cut(s)	1460, 1516, 2444
BstPAI	GACNNNNGTC	1 cut(s)	1746
BstSCI	CCNGG	6 cut(s)	121, 231, 306, 2101, 2169, 2344
BstSFI	CTRYAG	4 cut(s)	334, 428, 1419, 1924
BstSLI	GKGCMC	3 cut(s)	141, 1024, 1208
BstUI	CGCG	2 cut(s)	128, 1575
BstV1I	GCAGC	3 cut(s)	826, 1174, 2327
BstV2I	GAAGAC	1 cut(s)	1670
BstX2I	RGATCY	1 cut(s)	1993
BstYI	RGATCY	1 cut(s)	1993
BstZ17I	GTATAC	2 cut(s)	1305, 1973
BstZI	CGGCCG	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	1855
BsuRI	GGCC	5 cut(s)	23, 134, 306, 1255, 1637
BtgZI	GCGATG	1 cut(s)	1994
BtsCI	GGATG	9 cut(s)	345, 861, 874, 1330, 1384, 1543, 1855, 2137, 2164
BtsIMutI	CAGTG	5 cut(s)	1022, 1132, 1256, 2308, 2489
BtuMI	TCGCGA	1 cut(s)	1575
BveI	ACCTGC	2 cut(s)	421, 2216
Cac8I	GCNNGC	7 cut(s)	141, 861, 991, 1458, 1573, 1602, 1908
CaiI	CAGNNNCTG	1 cut(s)	2036
CciI	TCATGA	3 cut(s)	79, 1429, 2257
CfoI	GCGC	2 cut(s)	128, 532
Cfr13I	GGNCC	3 cut(s)	22, 132, 412
CseI	GACGC	2 cut(s)	233, 558
Csp6I	GTAC	6 cut(s)	370, 705, 1516, 1834, 2293, 2410
CviQI	GTAC	6 cut(s)	370, 705, 1516, 1834, 2293, 2410
DdeI	CTNAG	3 cut(s)	26, 450, 1639
DpnI	GATC	4 cut(s)	945, 1218, 1703, 1995
DpnII	GATC	4 cut(s)	943, 1216, 1701, 1993
DraIII	CACNNNGTG	2 cut(s)	1212, 1524
DriI	GACNNNNNGTC	1 cut(s)	568
EaeI	YGGCCR	2 cut(s)	304, 1253
EagI	CGGCCG	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	2262
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	2262
EclXI	CGGCCG	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	1637
Eco24I	GRGCYC	2 cut(s)	1794, 1989
Eco31I	GGTCTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	1352
Eco47I	GGWCC	1 cut(s)	412
Eco52I	CGGCCG	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	1782
Eco81I	CCTNAGG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	1070
EcoRII	CCWGG	3 cut(s)	2101, 2169, 2344
EcoRV	GATATC	1 cut(s)	1352
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	2 cut(s)	615, 2219
EcoT38I	GRGCYC	2 cut(s)	1794, 1989
ErhI	CCWWGG	1 cut(s)	441
FalI	AAGNNNNNCTT	6 cut(s)	1865, 1897, 2273, 2305, 2437, 2469
FaqI	GGGAC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	943, 1701
FblI	GTMKAC	2 cut(s)	1304, 1972
Fnu4HI	GCNGC	4 cut(s)	447, 840, 1188, 2316
FokI	GGATG	9 cut(s)	352, 868, 881, 1337, 1391, 1550, 1862, 2124, 2151
FriOI	GRGCYC	2 cut(s)	1794, 1989
Fsp4HI	GCNGC	4 cut(s)	447, 840, 1188, 2316
FspBI	CTAG	5 cut(s)	89, 1083, 1478, 2001, 2312
GlaI	GCGC	2 cut(s)	127, 531
GluI	GCNGC	4 cut(s)	447, 840, 1188, 2316
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	5 cut(s)	23, 134, 306, 1255, 1637
HapII	CCGG	6 cut(s)	123, 232, 288, 303, 307, 2457
HgaI	GACGC	2 cut(s)	233, 558
HhaI	GCGC	2 cut(s)	128, 532
Hin6I	GCGC	2 cut(s)	126, 530
HinP1I	GCGC	2 cut(s)	126, 530
HincII	GTYRAC	1 cut(s)	1741
HindII	GTYRAC	1 cut(s)	1741
HindIII	AAGCTT	1 cut(s)	2245
HinfI	GANTC	3 cut(s)	1166, 1545, 1929
HpaII	CCGG	6 cut(s)	123, 232, 288, 303, 307, 2457
HphI	GGTGA	6 cut(s)	265, 665, 824, 1238, 1640, 2074
Hpy166II	GTNNAC	7 cut(s)	139, 742, 1206, 1305, 1518, 1741, 1973
Hpy188I	TCNGA	8 cut(s)	243, 405, 948, 1360, 1801, 2056, 2277, 2334
Hpy8I	GTNNAC	7 cut(s)	139, 742, 1206, 1305, 1518, 1741, 1973
Hpy99I	CGWCG	2 cut(s)	20, 227
HpyAV	CCTTC	6 cut(s)	722, 1004, 1355, 2275, 2387, 2410
HpyCH4III	ACNGT	6 cut(s)	50, 583, 691, 1242, 1948, 2303
HpyCH4IV	ACGT	3 cut(s)	115, 1969, 2232
HpyF3I	CTNAG	3 cut(s)	26, 450, 1639
HpySE526I	ACGT	3 cut(s)	115, 1969, 2232
HspAI	GCGC	2 cut(s)	126, 530
Kpn2I	TCCGGA	1 cut(s)	2456
Ksp22I	TGATCA	2 cut(s)	943, 1701
Kzo9I	GATC	4 cut(s)	943, 1216, 1701, 1993
LguI	GCTCTTC	1 cut(s)	2262
LmnI	GCTCC	3 cut(s)	1060, 1184, 1984
Lsp1109I	GCAGC	3 cut(s)	826, 1174, 2327
LweI	GCATC	8 cut(s)	846, 939, 1219, 1397, 1866, 2042, 2281, 2440
MaeI	CTAG	5 cut(s)	89, 1083, 1478, 2001, 2312
MaeII	ACGT	3 cut(s)	115, 1969, 2232
MaeIII	GTNAC	2 cut(s)	458, 2228
MalI	GATC	4 cut(s)	945, 1218, 1703, 1995
MbiI	CCGCTC	1 cut(s)	1571
MboI	GATC	4 cut(s)	943, 1216, 1701, 1993
MboII	GAAGA	7 cut(s)	323, 1604, 1675, 2246, 2279, 2290, 2380
MfeI	CAATTG	1 cut(s)	1744
MflI	RGATCY	1 cut(s)	1993
MhlI	GDGCHC	6 cut(s)	141, 1024, 1208, 1794, 1989, 2489
MlsI	TGGCCA	1 cut(s)	1255
MluNI	TGGCCA	1 cut(s)	1255
MmeI	TCCRAC	2 cut(s)	1827, 1930
Mox20I	TGGCCA	1 cut(s)	1255
Mph1103I	ATGCAT	2 cut(s)	615, 2219
MroI	TCCGGA	1 cut(s)	2456
MroXI	GAANNNNTTC	1 cut(s)	2285
MscI	TGGCCA	1 cut(s)	1255
MseI	TTAA	2 cut(s)	534, 2405
MslI	CAYNNNNRTG	4 cut(s)	36, 747, 1294, 1455
Msp20I	TGGCCA	1 cut(s)	1255
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	6 cut(s)	123, 232, 288, 303, 307, 2457
MspR9I	CCNGG	6 cut(s)	123, 233, 308, 2103, 2171, 2346
MunI	CAATTG	1 cut(s)	1744
Mva1269I	GAATGC	2 cut(s)	1945, 2219
MvaI	CCWGG	3 cut(s)	2103, 2171, 2346
MvnI	CGCG	2 cut(s)	128, 1575
NciI	CCSGG	3 cut(s)	123, 233, 308
NdeII	GATC	4 cut(s)	943, 1216, 1701, 1993
NlaIV	GGNNCC	2 cut(s)	43, 1986
NmeAIII	GCCGAG	1 cut(s)	156
NruI	TCGCGA	1 cut(s)	1575
NsiI	ATGCAT	2 cut(s)	615, 2219
NspI	RCATGY	3 cut(s)	1460, 1516, 2444
PaeI	GCATGC	1 cut(s)	1460
PagI	TCATGA	3 cut(s)	79, 1429, 2257
PceI	AGGCCT	1 cut(s)	1637
PciI	ACATGT	1 cut(s)	2440
PciSI	GCTCTTC	1 cut(s)	2262
PctI	GAATGC	2 cut(s)	1945, 2219
PdmI	GAANNNNTTC	1 cut(s)	2285
PfeI	GAWTC	3 cut(s)	1166, 1545, 1929
PkrI	GCNGC	4 cut(s)	448, 841, 1189, 2317
PscI	ACATGT	1 cut(s)	2440
PshAI	GACNNNNGTC	1 cut(s)	1746
PsiI	TTATAA	1 cut(s)	975
Psp6I	CCWGG	3 cut(s)	2101, 2169, 2344
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	3 cut(s)	2101, 2169, 2344
PspN4I	GGNNCC	2 cut(s)	43, 1986
PspPI	GGNCC	3 cut(s)	22, 132, 412
PstI	CTGCAG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	2036
PsuI	RGATCY	1 cut(s)	1993
RruI	TCGCGA	1 cut(s)	1575
RsaI	GTAC	6 cut(s)	371, 706, 1517, 1835, 2294, 2411
RsaNI	GTAC	6 cut(s)	370, 705, 1516, 1834, 2293, 2410
RseI	CAYNNNNRTG	4 cut(s)	36, 747, 1294, 1455
SapI	GCTCTTC	1 cut(s)	2262
SaqAI	TTAA	2 cut(s)	534, 2405
SatI	GCNGC	4 cut(s)	447, 840, 1188, 2316
Sau3AI	GATC	4 cut(s)	943, 1216, 1701, 1993
Sau96I	GGNCC	3 cut(s)	22, 132, 412
ScaI	AGTACT	1 cut(s)	2411
ScrFI	CCNGG	6 cut(s)	123, 233, 308, 2103, 2171, 2346
SduI	GDGCHC	6 cut(s)	141, 1024, 1208, 1794, 1989, 2489
SfaNI	GCATC	8 cut(s)	846, 939, 1219, 1397, 1866, 2042, 2281, 2440
SfcI	CTRYAG	4 cut(s)	334, 428, 1419, 1924
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	4 cut(s)	36, 747, 1294, 1455
SmlI	CTYRAG	4 cut(s)	152, 203, 533, 1890
SmoI	CTYRAG	4 cut(s)	152, 203, 533, 1890
SpeI	ACTAGT	1 cut(s)	1082
SphI	GCATGC	1 cut(s)	1460
SseBI	AGGCCT	1 cut(s)	1637
SsiI	CCGC	6 cut(s)	276, 320, 446, 668, 1569, 2190
SspI	AATATT	1 cut(s)	1554
SspMI	CTAG	5 cut(s)	89, 1083, 1478, 2001, 2312
StuI	AGGCCT	1 cut(s)	1637
StyD4I	CCNGG	6 cut(s)	121, 231, 306, 2101, 2169, 2344
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	6 cut(s)	50, 583, 691, 1242, 1948, 2303
TaiI	ACGT	3 cut(s)	118, 1972, 2235
TatI	WGTACW	5 cut(s)	369, 704, 1515, 2292, 2409
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	1166, 1545, 1929
Tru1I	TTAA	2 cut(s)	534, 2405
Tru9I	TTAA	2 cut(s)	534, 2405
TscAI	CASTG	5 cut(s)	1029, 1132, 1256, 2308, 2489
TseI	GCWGC	3 cut(s)	839, 1187, 2315
TspGWI	ACGGA	4 cut(s)	124, 136, 899, 1922
TspRI	CASTG	5 cut(s)	1029, 1132, 1256, 2308, 2489
Vha464I	CTTAAG	1 cut(s)	533
VneI	GTGCAC	2 cut(s)	137, 1204
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	1070, 1134
XceI	RCATGY	3 cut(s)	1460, 1516, 2444
XcmI	CCANNNNNNNNNTGG	2 cut(s)	490, 2109
XmiI	GTMKAC	2 cut(s)	1304, 1972
XmnI	GAANNNNTTC	1 cut(s)	2285
XspI	CTAG	5 cut(s)	89, 1083, 1478, 2001, 2312
ZrmI	AGTACT	1 cut(s)	2411
Zsp2I	ATGCAT	2 cut(s)	615, 2219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.