Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Reverse (-)

32540476 .. 32545309

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024154

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGATAGAGGGACAAGTCGATGGTCAGATAGTCAACGCCGTGGTGCAGGTTAGGGTTTGCGGCGAGGAGGGGAGGAGGACGATTGAGATAAAAAGACCCACGCTGGCATCGTTGTCGCAGCCGGCCAGTCGATGTTATCTCAGCCACGCCGACCCCGAGCTCGCCAGGGCCGTCCACGCCTCCGTTCTCAAGCTCGAAAACGACACCCATCTCGGCAACGCTCTTGTTTCGGCTTATCTCAAGCTGGGTCTCGTTCCCGACGCTTACCGGGTCTTTCAGAGCCTCCCATGCCCCAACGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGAGGAGGCGGTGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGCGTCTGCAGGTCCATGCCTTGGTGGCTAAGATGGGTTACTTGGATTGTGTTTTTGTTTCCAATGCCGTGATGGGTCTGTATGGGAAATGTAGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCACAGAGACATTGCGTCTTGGAATACTGTTATGGCGAGTTTAGCGAATGAGTTTATGTATGATGAAGTGTTTGAGCTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTAGCGGACTATATCACGCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCACGCCTATGCTGTCAAGACTGGTTTGGAGGGAAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGTTAGGGATGTTATTACTTGGACGGAGATGATTGCTGCCTGCATGGACTTCGGTTTGGTGGGGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTGTTTTTCTTATAATGCTCTAATGGCTGGCTTTTGTCGAAATGGGGAAGGTTTGAGGGCACTGGAATTATTTATGAGAATGGTGGAGGAGGGTATGGAGCTGACAGAATTCACTTTGACTAGTGTTGTTGGTGCTTGTGGATTGCTCATGGACTGCAAAACCAGTGAGCAAATTCATGGGTTTGTTGTCAAGTTTGGTTTTGATTCAAATGCTTGTATTGGAGCTGCGTTGCTTGATATGTGCACAAGGTGTGATCGAATGGGAGATGCCAAGAAACTGTTTCACCAGTGGCCAAGTGAGCAGGAAAAATCTATAATTTTGACTTCACTTATATGCGGGTATACTCGAACTGGGCAACTGGATGAGGCAATTTCTATTTTCCACCGATATCAATCAGAAGGAATAATGGTTGTGGATGAAGTTGCATCAACTTCACTACTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCGCATGCTGTCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACAATGAGCATGTACACAAAGTGCTGGAACATGGATGAGGGAATCAAAATATTCAGTATGATGCCCACTCTCAACATAGTTTCATGGAATGTTTTGCTGGCTGGTTATCTTCTGCATAGACGGGGTGATGAGGCCTTAGTGGTCTGGTCAAAGATGGAGAAGACTGGCATAAAACCAGACAAGATAACCTTTATTTTGATCATTTCAGCACACAGACATACTAACTCCAATTCTGTTGACAATTGTCGAAGTGTGTTTCTCTCCATGAAAGCAGTTTATGACATTGAACCCGCTTCAGAGCATTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTGAGCCTGAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCCGTATGAATGCAACTGTTGGAAAAAGGGTTGTGAAACGTATACTTGCGATGGAGCCCAAAGATCCATCTAGCTACATACTCATATCAAATCTGTATTCAGCATCTGGGAGATGGCATTGCTCTGAAATGGTGAGAGATGACATGAGAAAAAAGGGGTTCTGGAAGCACCCAGGTCGAAGTTGGTTAATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCATCCCCAGGCAAAAGACATATATAGCGGATTAGAAATACTTATTGTAGAATGCATGAAAGCTGGTTACGTTCCAGACACAAGCTTTGTTCTTCATGAAGTGGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTAGCAGCCACCTATGGGCTTCTGACCAACAAACCAGGAAAACCAATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATACCTTCTTAAAGTACTTGTCCATTGTTGCCAAGAGAGCAATACACGTAAGAGATGCTGCCGGATTTCACTATTTTTCAAATGGTCAGTGCTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

848

Amino Acids

94.66

Weight (kDa)

6.16

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	97 - 127	3.5e-07	PPR repeat
PPR_2	PF13041	98 - 146	2.8e-12	PPR repeat family
PPR_3	PF13812	98 - 145	2.5e-07	Pentatricopeptide repeat domain
PPR	PF01535	101 - 131	4.6e-08	PPR repeat
PPR_2	PF13041	333 - 379	6.8e-09	PPR repeat family
PPR	PF01535	335 - 364	2.8e-07	PPR repeat
PPR_2	PF13041	538 - 583	1.6e-10	PPR repeat family
E_motif	PF20431	662 - 718	3.9e-14	E motif
DYW_deaminase	PF14432	755 - 847	4.7e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1011
Acc36I	ACCTGC	2 cut(s)	37, 457
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	2 cut(s)	1340, 2008
AciI	CCGC	7 cut(s)	60, 312, 356, 704, 1335, 1830, 2226
AclWI	GGATC	1 cut(s)	2024
AcoI	YGGCCR	3 cut(s)	123, 340, 1289
AcsI	RAATTY	3 cut(s)	811, 1106, 1170
AcuI	CTGAAG	2 cut(s)	1818, 1947
AdeI	CACNNNGTG	2 cut(s)	1248, 1560
AfaI	GTAC	6 cut(s)	407, 742, 1553, 1871, 2330, 2447
AfiI	CCNNNNNNNGG	5 cut(s)	298, 349, 478, 2206, 2361
AflII	CTTAAG	1 cut(s)	569
AflIII	ACRYGT	1 cut(s)	2476
AgsI	TTSAA	3 cut(s)	1206, 1826, 2511
AhdI	GACNNNNNGTC	1 cut(s)	604
AhlI	ACTAGT	1 cut(s)	1118
AjnI	CCWGG	4 cut(s)	164, 2137, 2205, 2380
Alw21I	GWGCWC	3 cut(s)	162, 1244, 2525
Alw26I	GTCTC	3 cut(s)	254, 591, 2418
Alw44I	GTGCAC	1 cut(s)	1240
AlwI	GGATC	1 cut(s)	2024
AlwNI	CAGNNNCTG	1 cut(s)	2072
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	5 cut(s)	123, 168, 340, 1289, 1671
ApaLI	GTGCAC	1 cut(s)	1240
ApeKI	GCWGC	6 cut(s)	118, 875, 932, 1223, 2351, 2489
ApoI	RAATTY	3 cut(s)	811, 1106, 1170
ArsI	GACNNNNNNTTYG	2 cut(s)	2267, 2299
Asp700I	GAANNNNTTC	1 cut(s)	2321
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	3 cut(s)	168, 448, 469
AsuC2I	CCSGG	2 cut(s)	269, 344
AsuHPI	GGTGA	6 cut(s)	301, 701, 860, 1274, 1676, 2110
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	448, 469
BaeGI	GKGCMC	2 cut(s)	1060, 1244
BaeI	ACNNNNGTAYC	2 cut(s)	1861, 1894
BalI	TGGCCA	1 cut(s)	1291
BanII	GRGCYC	2 cut(s)	162, 2025
BbsI	GAAGAC	1 cut(s)	1706
Bbv12I	GWGCWC	3 cut(s)	162, 1244, 2525
BbvI	GCAGC	6 cut(s)	130, 862, 919, 1210, 2363, 2476
BceAI	ACGGC	3 cut(s)	23, 155, 509
BcgI	CGANNNNNNTGC	6 cut(s)	96, 130, 928, 962, 2123, 2157
BciT130I	CCWGG	4 cut(s)	166, 2139, 2207, 2382
BciVI	GTATCC	1 cut(s)	1891
BclI	TGATCA	2 cut(s)	979, 1737
BcnI	CCSGG	2 cut(s)	269, 344
BcoDI	GTCTC	3 cut(s)	254, 591, 2418
BcuI	ACTAGT	1 cut(s)	1118
BfaI	CTAG	4 cut(s)	1119, 1514, 2037, 2348
BfmI	CTRYAG	4 cut(s)	370, 464, 1455, 1960
BfrI	CTTAAG	1 cut(s)	569
BfuAI	ACCTGC	2 cut(s)	37, 457
BfuI	GTATCC	1 cut(s)	1891
BglI	GCCNNNNNGGC	1 cut(s)	482
BisI	GCNGC	7 cut(s)	61, 119, 876, 933, 1224, 2352, 2490
BlsI	GCNGC	7 cut(s)	62, 120, 877, 934, 1225, 2353, 2491
BmcAI	AGTACT	1 cut(s)	2447
Bme1390I	CCNGG	6 cut(s)	166, 269, 344, 2139, 2207, 2382
Bme18I	GGWCC	2 cut(s)	448, 469
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	168, 448, 469
BmiI	GGNNCC	1 cut(s)	2022
BmrFI	CCNGG	6 cut(s)	166, 269, 344, 2139, 2207, 2382
BmrI	ACTGGG	3 cut(s)	1359, 1481, 1882
BmuI	ACTGGG	3 cut(s)	1359, 1481, 1882
BoxI	GACNNNNGTC	1 cut(s)	1782
BpiI	GAAGAC	1 cut(s)	1706
BpuEI	CTTGAG	2 cut(s)	173, 224
BpuMI	CCSGG	2 cut(s)	269, 344
BsaAI	YACGTR	1 cut(s)	2479
BsaBI	GATNNNNATC	1 cut(s)	1390
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	5 cut(s)	39, 165, 477, 2137, 2205
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	5 cut(s)	298, 349, 478, 2206, 2361
Bse118I	RCCGGY	1 cut(s)	121
Bse3DI	GCAATG	3 cut(s)	600, 832, 2083
Bse8I	GATNNNNATC	1 cut(s)	1390
BseBI	CCWGG	4 cut(s)	166, 2139, 2207, 2382
BseDI	CCNNGG	5 cut(s)	39, 165, 477, 2137, 2205
BseGI	GGATG	9 cut(s)	381, 897, 910, 1366, 1420, 1579, 1891, 2173, 2200
BseJI	GATNNNNATC	1 cut(s)	1390
BseLI	CCNNNNNNNGG	5 cut(s)	298, 349, 478, 2206, 2361
BseMI	GCAATG	3 cut(s)	600, 832, 2083
BseMII	CTCAG	1 cut(s)	154
BseRI	GAGGAG	5 cut(s)	80, 88, 365, 394, 1100
BseSI	GKGCMC	2 cut(s)	1060, 1244
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	6 cut(s)	130, 862, 919, 1210, 2363, 2476
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	5 cut(s)	125, 170, 342, 1291, 1673
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	3 cut(s)	162, 1244, 2525
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	6 cut(s)	122, 268, 324, 339, 343, 2493
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	5 cut(s)	298, 349, 478, 2206, 2361
BsmAI	GTCTC	3 cut(s)	254, 591, 2418
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	2 cut(s)	1981, 2255
BsnI	GGCC	5 cut(s)	125, 170, 342, 1291, 1673
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	5 cut(s)	162, 1060, 1244, 2025, 2525
Bsp1407I	TGTACA	1 cut(s)	1551
Bsp143I	GATC	4 cut(s)	979, 1252, 1737, 2029
BspACI	CCGC	7 cut(s)	60, 312, 356, 704, 1335, 1830, 2226
BspANI	GGCC	5 cut(s)	125, 170, 342, 1291, 1673
BspCNI	CTCAG	1 cut(s)	153
BspHI	TCATGA	2 cut(s)	1465, 2293
BspLI	GGNNCC	1 cut(s)	2022
BspMAI	CTGCAG	1 cut(s)	468
BspMI	ACCTGC	2 cut(s)	37, 457
BspPI	GGATC	1 cut(s)	2024
BspQI	GCTCTTC	1 cut(s)	2298
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	3 cut(s)	600, 832, 2083
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	1551
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	5 cut(s)	39, 165, 477, 2137, 2205
BssMI	GATC	4 cut(s)	979, 1252, 1737, 2029
BssNAI	GTATAC	2 cut(s)	1341, 2009
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	2 cut(s)	1341, 2009
Bst2UI	CCWGG	4 cut(s)	166, 2139, 2207, 2382
Bst4CI	ACNGT	5 cut(s)	619, 727, 1278, 1984, 2339
Bst6I	CTCTTC	2 cut(s)	342, 2298
BstAFI	CTTAAG	1 cut(s)	569
BstAUI	TGTACA	1 cut(s)	1551
BstBAI	YACGTR	1 cut(s)	2479
BstC8I	GCNNGC	8 cut(s)	105, 123, 162, 937, 1027, 1494, 1638, 1944
BstDEI	CTNAG	3 cut(s)	140, 486, 1675
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	9 cut(s)	381, 897, 910, 1366, 1420, 1579, 1891, 2173, 2200
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	4 cut(s)	982, 1255, 1740, 2032
BstMAI	GTCTC	3 cut(s)	254, 591, 2418
BstMBI	GATC	4 cut(s)	979, 1252, 1737, 2029
BstMCI	CGRYCG	1 cut(s)	343
BstNI	CCWGG	4 cut(s)	166, 2139, 2207, 2382
BstNSI	RCATGY	2 cut(s)	1496, 1552
BstPAI	GACNNNNGTC	1 cut(s)	1782
BstSCI	CCNGG	6 cut(s)	164, 267, 342, 2137, 2205, 2380
BstSFI	CTRYAG	4 cut(s)	370, 464, 1455, 1960
BstSLI	GKGCMC	2 cut(s)	1060, 1244
BstV1I	GCAGC	6 cut(s)	130, 862, 919, 1210, 2363, 2476
BstV2I	GAAGAC	1 cut(s)	1706
BstX2I	RGATCY	1 cut(s)	2029
BstYI	RGATCY	1 cut(s)	2029
BstZ17I	GTATAC	2 cut(s)	1341, 2009
BstZI	CGGCCG	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	1891
BsuRI	GGCC	5 cut(s)	125, 170, 342, 1291, 1673
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	2030
BtsCI	GGATG	9 cut(s)	381, 897, 910, 1366, 1420, 1579, 1891, 2173, 2200
BtsIMutI	CAGTG	5 cut(s)	1058, 1168, 1292, 2344, 2525
BveI	ACCTGC	2 cut(s)	37, 457
Cac8I	GCNNGC	8 cut(s)	105, 123, 162, 937, 1027, 1494, 1638, 1944
CaiI	CAGNNNCTG	1 cut(s)	2072
CciI	TCATGA	2 cut(s)	1465, 2293
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	168, 448, 469
CseI	GACGC	3 cut(s)	269, 449, 594
Csp6I	GTAC	6 cut(s)	406, 741, 1552, 1870, 2329, 2446
CviQI	GTAC	6 cut(s)	406, 741, 1552, 1870, 2329, 2446
DdeI	CTNAG	3 cut(s)	140, 486, 1675
DpnI	GATC	4 cut(s)	981, 1254, 1739, 2031
DpnII	GATC	4 cut(s)	979, 1252, 1737, 2029
DraIII	CACNNNGTG	2 cut(s)	1248, 1560
DriI	GACNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	3 cut(s)	123, 340, 1289
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	342, 2298
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	2 cut(s)	342, 2298
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	1673
Eco24I	GRGCYC	2 cut(s)	162, 2025
Eco31I	GGTCTC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	1388
Eco47I	GGWCC	2 cut(s)	448, 469
Eco52I	CGGCCG	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	1818, 1947
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	1106
EcoRII	CCWGG	4 cut(s)	164, 2137, 2205, 2380
EcoRV	GATATC	1 cut(s)	1388
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	2255
EcoT38I	GRGCYC	2 cut(s)	162, 2025
ErhI	CCWWGG	1 cut(s)	477
FalI	AAGNNNNNCTT	6 cut(s)	1712, 1744, 1901, 1933, 2309, 2341
FaqI	GGGAC	1 cut(s)	24
FauI	CCCGC	2 cut(s)	1328, 1837
FbaI	TGATCA	2 cut(s)	979, 1737
FblI	GTMKAC	2 cut(s)	1340, 2008
Fnu4HI	GCNGC	7 cut(s)	61, 119, 876, 933, 1224, 2352, 2490
FokI	GGATG	9 cut(s)	388, 904, 917, 1373, 1427, 1586, 1898, 2160, 2187
FriOI	GRGCYC	2 cut(s)	162, 2025
Fsp4HI	GCNGC	7 cut(s)	61, 119, 876, 933, 1224, 2352, 2490
FspBI	CTAG	4 cut(s)	1119, 1514, 2037, 2348
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	7 cut(s)	61, 119, 876, 933, 1224, 2352, 2490
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	5 cut(s)	125, 170, 342, 1291, 1673
HapII	CCGG	6 cut(s)	122, 268, 324, 339, 343, 2493
HgaI	GACGC	3 cut(s)	269, 449, 594
HhaI	GCGC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	2 cut(s)	34, 1777
HindII	GTYRAC	2 cut(s)	34, 1777
HindIII	AAGCTT	1 cut(s)	2281
HinfI	GANTC	3 cut(s)	1202, 1581, 1965
HpaII	CCGG	6 cut(s)	122, 268, 324, 339, 343, 2493
HphI	GGTGA	6 cut(s)	301, 701, 860, 1274, 1676, 2110
Hpy166II	GTNNAC	8 cut(s)	34, 175, 778, 1242, 1341, 1554, 1777, 2009
Hpy188I	TCNGA	9 cut(s)	27, 279, 441, 984, 1396, 1837, 2092, 2313, 2370
Hpy188III	TCNNGA	7 cut(s)	257, 793, 886, 1466, 2128, 2273, 2294
Hpy8I	GTNNAC	8 cut(s)	34, 175, 778, 1242, 1341, 1554, 1777, 2009
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	6 cut(s)	758, 1040, 1391, 2311, 2423, 2446
HpyCH4III	ACNGT	5 cut(s)	619, 727, 1278, 1984, 2339
HpyCH4IV	ACGT	4 cut(s)	297, 2005, 2268, 2478
HpyF3I	CTNAG	3 cut(s)	140, 486, 1675
HpySE526I	ACGT	4 cut(s)	297, 2005, 2268, 2478
HspAI	GCGC	1 cut(s)	566
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	2 cut(s)	979, 1737
Kzo9I	GATC	4 cut(s)	979, 1252, 1737, 2029
LguI	GCTCTTC	1 cut(s)	2298
LmnI	GCTCC	4 cut(s)	361, 1096, 1220, 2020
Lsp1109I	GCAGC	6 cut(s)	130, 862, 919, 1210, 2363, 2476
MaeI	CTAG	4 cut(s)	1119, 1514, 2037, 2348
MaeII	ACGT	4 cut(s)	297, 2005, 2268, 2478
MaeIII	GTNAC	2 cut(s)	494, 2264
MalI	GATC	4 cut(s)	981, 1254, 1739, 2031
MboI	GATC	4 cut(s)	979, 1252, 1737, 2029
MboII	GAAGA	7 cut(s)	359, 1640, 1711, 2282, 2315, 2326, 2416
MfeI	CAATTG	1 cut(s)	1780
MflI	RGATCY	1 cut(s)	2029
MhlI	GDGCHC	5 cut(s)	162, 1060, 1244, 2025, 2525
MlsI	TGGCCA	1 cut(s)	1291
MluNI	TGGCCA	1 cut(s)	1291
MmeI	TCCRAC	2 cut(s)	1863, 1966
Mox20I	TGGCCA	1 cut(s)	1291
Mph1103I	ATGCAT	1 cut(s)	2255
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	2321
MscI	TGGCCA	1 cut(s)	1291
MseI	TTAA	3 cut(s)	570, 2153, 2441
MslI	CAYNNNNRTG	3 cut(s)	783, 1330, 1491
Msp20I	TGGCCA	1 cut(s)	1291
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	6 cut(s)	122, 268, 324, 339, 343, 2493
MspR9I	CCNGG	6 cut(s)	166, 269, 344, 2139, 2207, 2382
MunI	CAATTG	1 cut(s)	1780
Mva1269I	GAATGC	2 cut(s)	1981, 2255
MvaI	CCWGG	4 cut(s)	166, 2139, 2207, 2382
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	2 cut(s)	269, 344
NdeII	GATC	4 cut(s)	979, 1252, 1737, 2029
NgoMIV	GCCGGC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	2022
NmeAIII	GCCGAG	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	2255
NspI	RCATGY	2 cut(s)	1496, 1552
PaeI	GCATGC	1 cut(s)	1496
PagI	TCATGA	2 cut(s)	1465, 2293
PceI	AGGCCT	1 cut(s)	1673
PciSI	GCTCTTC	1 cut(s)	2298
PcsI	WCGNNNNNNNCGW	3 cut(s)	107, 153, 168
PctI	GAATGC	2 cut(s)	1981, 2255
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	2321
PfeI	GAWTC	3 cut(s)	1202, 1581, 1965
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	62, 120, 877, 934, 1225, 2353, 2491
Ppu21I	YACGTR	1 cut(s)	2479
PshAI	GACNNNNGTC	1 cut(s)	1782
PsiI	TTATAA	1 cut(s)	1011
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	4 cut(s)	164, 2137, 2205, 2380
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	4 cut(s)	164, 2137, 2205, 2380
PspN4I	GGNNCC	1 cut(s)	2022
PspPI	GGNCC	3 cut(s)	168, 448, 469
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	2072
PsuI	RGATCY	1 cut(s)	2029
RsaI	GTAC	6 cut(s)	407, 742, 1553, 1871, 2330, 2447
RsaNI	GTAC	6 cut(s)	406, 741, 1552, 1870, 2329, 2446
RseI	CAYNNNNRTG	3 cut(s)	783, 1330, 1491
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	2298
SaqAI	TTAA	3 cut(s)	570, 2153, 2441
SatI	GCNGC	7 cut(s)	61, 119, 876, 933, 1224, 2352, 2490
Sau3AI	GATC	4 cut(s)	979, 1252, 1737, 2029
Sau96I	GGNCC	3 cut(s)	168, 448, 469
ScaI	AGTACT	1 cut(s)	2447
ScrFI	CCNGG	6 cut(s)	166, 269, 344, 2139, 2207, 2382
SduI	GDGCHC	5 cut(s)	162, 1060, 1244, 2025, 2525
SfcI	CTRYAG	4 cut(s)	370, 464, 1455, 1960
SinI	GGWCC	2 cut(s)	448, 469
SmiMI	CAYNNNNRTG	3 cut(s)	783, 1330, 1491
SmlI	CTYRAG	3 cut(s)	188, 239, 569
SmoI	CTYRAG	3 cut(s)	188, 239, 569
SpeI	ACTAGT	1 cut(s)	1118
SphI	GCATGC	1 cut(s)	1496
SseBI	AGGCCT	1 cut(s)	1673
SsiI	CCGC	7 cut(s)	60, 312, 356, 704, 1335, 1830, 2226
SspI	AATATT	1 cut(s)	1590
SspMI	CTAG	4 cut(s)	1119, 1514, 2037, 2348
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	1673
StyD4I	CCNGG	6 cut(s)	164, 267, 342, 2137, 2205, 2380
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	5 cut(s)	619, 727, 1278, 1984, 2339
TaiI	ACGT	4 cut(s)	300, 2008, 2271, 2481
TatI	WGTACW	5 cut(s)	405, 740, 1551, 2328, 2445
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	1202, 1581, 1965
Tru1I	TTAA	3 cut(s)	570, 2153, 2441
Tru9I	TTAA	3 cut(s)	570, 2153, 2441
TscAI	CASTG	5 cut(s)	1065, 1168, 1292, 2344, 2525
TseI	GCWGC	6 cut(s)	118, 875, 932, 1223, 2351, 2489
TspGWI	ACGGA	3 cut(s)	172, 935, 1958
TspRI	CASTG	5 cut(s)	1065, 1168, 1292, 2344, 2525
Van91I	CCANNNNNTGG	1 cut(s)	478
Vha464I	CTTAAG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	1240
VpaK11BI	GGWCC	2 cut(s)	448, 469
XapI	RAATTY	3 cut(s)	811, 1106, 1170
XceI	RCATGY	2 cut(s)	1496, 1552
XcmI	CCANNNNNNNNNTGG	2 cut(s)	526, 2145
XmiI	GTMKAC	2 cut(s)	1340, 2008
XmnI	GAANNNNTTC	1 cut(s)	2321
XspI	CTAG	4 cut(s)	1119, 1514, 2037, 2348
ZrmI	AGTACT	1 cut(s)	2447
Zsp2I	ATGCAT	1 cut(s)	2255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.