Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

15639241 .. 15642289

Gene Structure 3049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG169000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGAACACCGTTATCCAACCCGCCTTCGCCGCCTTACCTCCTCCGCTCTCTCAGTACTACCCTCCAAAACCACCACCGCACTCCTCTCTTTCTCTCTCTCCCTCTAGACCCAAACCCAAAACCCCCCTCAACTTCTCCACCCAATCCCTCCAACCCCTTTTCACCACTCCACACCCTCCCAATCCCAATGGCTCTCACCAAACCCACTCTCTCTTCTCCCATCTCCTCCATCTGCTCCGCCTCTCGTCCCGCCACGCCGACCCCGAGCTCGCCAGGGCCGTCCACGCCTCCGTTCTCAAGCTCGAAAACGACACCCATCTCGGCAACGCCCTTGTTTCGGCTTATCTCCAGCTGGGTCTCGTTCCCGACGCTTACCGGGTCTTTCAGAGCCTCCCATGCCCCAATGTGGTGTCTTTCACCGCCCTCGTTTCCGGTTTTGCCAAGTCCGGCCGGGAAGAGGAGGCGGTGGAGCTTTTCTGTAGGATGAGGAGGTCAGGTATTGAGCCTAACGAGTACAGCTTTGTTGCAATTTTGACTGCTTGTATTCGGATTTTGGACCTCGAATTGGGTCTGCAGGTTCATGCCTTGGCGGCTAAGATGGGTTACTTGGATTGTGTTTTTGTTTCCAATGCCGTGATGGGTCTGTATGGGAAATGTGGGTGTTTGGATTATGCGCTTAAGGTGTTTGATGAAATGCCTCACAGAGACATTGCGTCTTGGAATACTGCTATGGCGAGTCTAGCGAATGAGTTTATGTATGATGAAGTGTTTGAGTTGTTCTGTGAAGTGTTGCGAGGTGATGGGTGTGTGGCGGACTATATCACGCTTTCGACTGTTTTGACTGCTTGTACTGGTAGTAATGCTTTCGTGGAAGGGCAAGAAGTTCACGCCTATGCTGTCAAGACTGGTTTGGAGGGCAATTTGAGTGTTGGCAATGCACTTATTGAGTTATATGGTGAGTGTGGGAGTGTAAAAGATGTGGCTGCTTTGTTCGAGAGGATGCCTGTTAGGGATGTTATTACTTGGACGGAGATGATTACTGCCTACATGGACTTCGGGTTGGTGGGGTTGGCTGTGGAGATGTTTGATCAGATGCCAGAGAGGAATTGTTTTTCTTATAATGCTCTAATGGCTGGCTTTTGTCGAAATGGGGAAGGTTTGAGGGCACTGGATTTATTTATGAGAATGGTGGAGGAGGGTATGGAGCTGACAGAATTCACTTTGACTAGTGTTGTTGGTGCTTGTGGCTTGCTCATGGACTGCAAAACTAGTGAGCAAATTCATGGGTTTGTTGTCAAGTTTGGTTTTGATTCAAATGCTTGTATTGGAGCTGCGTTGCTTGATATGTGCACAAGGTGTGATCAAATGGGAGATGCCAAGAAACTGTTTCACCAGTGGCCAAGTGAGCAGGAAAAATCTATAATTTTGACTTCACTTATATGTGGGTATACTCGAACTGGGCAACTGGATGAGGCAATTTCTATTTTCCACCGATATCAATCAGAAGGAATAATGGTTGTGGATGAAGTTGCATCAACTTCACTACTTGGTCTTTGTGGAACTATAGGGTATCATGAACTGGGGAAACAAATCCACTCGCATGCTATCAAGTATGGTTTTCTAGCTGATGTAGGGGTAGGAAATGCCACGATGAGCATGTACACAAAGTGCTGGAACATGGATGAGGGAATCAAAATATTCAGTATGATGTCCACTCGCGACATAGTTTCATGGAATGTTTTGCTGGCTGGTTATCTTCTGCATAGACAGGGTGATGACGCCTTAGCGGTCTGGTCAAAGATGGAGAAGACTGGCATAAAACCAGACAAGATTACCTTTATTTTGATCATTTCAGCACACAGACATACTAACTCCAATTCTGTTGACAATTGTCGAAGTTTGTTTCTCTCCATGAAAGCAGTTTATGACATTGAGCCCACTTCAGAGCATTTTGCCTCATTTATTGGTGTTTTAGGGTACTGGGGTCTGTTGGATGAGGCAGAGGATACTATCAGTAAGATGCCCTTTGAGCCTGAAGTTTCTGTTTGGCGAGCTTTGCTTGATAGCTGTAGAATCCGTATGAATGCAACTGTTGGAAAAAGGGTTGTGAAACGTATACTTGCGATGGAGCCCAAAGATCCATCTAGCTACATACTCATATCAAATCTGTATTCAGCATCTGGGAGATGGCATTGCTCTGAAATGGTGAGAGATGACATGAGAAAAAAGGGGTTCTGGAAGCACCCAGGTCGAAGTTGGTTCATTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCACCCCCAGGCGAAAGACATATATAGTGGATTAGAAATACTTATTGTAGAATGCATGAAAGCTGGTTACGTTCCAGACACAAGCTTTGTTCTTCATGAAGTGGAAGAGCATCAGAAGAAGGATTTCTTGTACTATCACAGTGCAAAACTAGCAGCCACCTATGGGCTTCTGACCAACAAACCAGGAAAACCAATTCGAGTTGTGAAGAATATCCTTCTATGTGGAGACTGCCATACCTTCTTAAAGTACTTGTCCGTTGTTGCCAAGAGAGCATTACATGTAAGAGATGCTTCCGGATTTCACTATTTTTCAAATGGTCAGTGCTCATGCAAAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

883

Amino Acids

98.53

Weight (kDa)

6.27

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	133 - 163	3.7e-07	PPR repeat
PPR_2	PF13041	134 - 182	3e-12	PPR repeat family
PPR_3	PF13812	134 - 181	2.7e-07	Pentatricopeptide repeat domain
PPR	PF01535	137 - 167	4.8e-08	PPR repeat
PPR_2	PF13041	369 - 415	6.8e-09	PPR repeat family
PPR	PF01535	371 - 400	4.3e-07	PPR repeat
PPR_2	PF13041	573 - 619	7.3e-11	PPR repeat family
E_motif	PF20431	698 - 753	5.5e-14	E motif
DYW_deaminase	PF14432	791 - 883	9.3e-34	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
Acc36I	ACCTGC	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	2 cut(s)	1448, 2116
AccII	CGCG	1 cut(s)	1719
AccIII	TCCGGA	1 cut(s)	2600
AclWI	GGATC	1 cut(s)	2132
AcoI	YGGCCR	2 cut(s)	448, 1397
AcsI	RAATTY	2 cut(s)	1214, 1278
AcuI	CTGAAG	2 cut(s)	1926, 2055
AcyI	GRCGYC	1 cut(s)	1779
AdeI	CACNNNGTG	2 cut(s)	1356, 1668
AfaI	GTAC	7 cut(s)	56, 515, 850, 1661, 1979, 2438, 2555
AfiI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	2584
AgsI	TTSAA	2 cut(s)	1314, 2619
AhdI	GACNNNNNGTC	1 cut(s)	712
AhlI	ACTAGT	2 cut(s)	1226, 1268
AjnI	CCWGG	4 cut(s)	272, 2245, 2313, 2488
Alw21I	GWGCWC	3 cut(s)	270, 1352, 2633
Alw26I	GTCTC	3 cut(s)	362, 699, 2526
Alw44I	GTGCAC	1 cut(s)	1348
AlwI	GGATC	1 cut(s)	2132
AlwNI	CAGNNNCTG	1 cut(s)	2180
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	2600
AoxI	GGCC	3 cut(s)	276, 448, 1397
ApaLI	GTGCAC	1 cut(s)	1348
ApeKI	GCWGC	3 cut(s)	983, 1331, 2459
ApoI	RAATTY	2 cut(s)	1214, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	2375, 2407
Asp700I	GAANNNNTTC	1 cut(s)	2429
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	276, 556
AsuC2I	CCSGG	2 cut(s)	377, 452
AsuHPI	GGTGA	8 cut(s)	154, 188, 409, 809, 968, 1382, 1784, 2218
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	2 cut(s)	1168, 1352
BaeI	ACNNNNGTAYC	2 cut(s)	1969, 2002
BalI	TGGCCA	1 cut(s)	1399
BanII	GRGCYC	3 cut(s)	270, 1938, 2133
BbsI	GAAGAC	1 cut(s)	1814
Bbv12I	GWGCWC	3 cut(s)	270, 1352, 2633
BbvI	GCAGC	3 cut(s)	970, 1318, 2471
BceAI	ACGGC	2 cut(s)	263, 617
BcgI	CGANNNNNNTGC	2 cut(s)	2231, 2265
BciT130I	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BciVI	GTATCC	1 cut(s)	1999
BclI	TGATCA	3 cut(s)	1087, 1360, 1845
BcnI	CCSGG	2 cut(s)	377, 452
BcoDI	GTCTC	3 cut(s)	362, 699, 2526
BcuI	ACTAGT	2 cut(s)	1226, 1268
BfaI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
BfmI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	1999
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
BlsI	GCNGC	5 cut(s)	31, 592, 985, 1333, 2461
BmcAI	AGTACT	2 cut(s)	56, 2555
Bme1390I	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
Bme18I	GGWCC	1 cut(s)	556
BmeRI	GACNNNNNGTC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	276, 556
BmiI	GGNNCC	1 cut(s)	2130
BmrFI	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
BmrI	ACTGGG	3 cut(s)	1467, 1589, 1990
BmsI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
BmuI	ACTGGG	3 cut(s)	1467, 1589, 1990
BoxI	GACNNNNGTC	1 cut(s)	1890
BpiI	GAAGAC	1 cut(s)	1814
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	1783
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	377, 452
BsaBI	GATNNNNATC	1 cut(s)	1498
BsaHI	GRCGYC	1 cut(s)	1779
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BsaWI	WCCGGW	2 cut(s)	431, 2600
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
Bse3DI	GCAATG	3 cut(s)	708, 940, 2191
Bse8I	GATNNNNATC	1 cut(s)	1498
BseAI	TCCGGA	1 cut(s)	2600
BseBI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BseDI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BseGI	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BseJI	GATNNNNATC	1 cut(s)	1498
BseLI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
BseMI	GCAATG	3 cut(s)	708, 940, 2191
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	6 cut(s)	30, 73, 215, 473, 502, 1208
BseSI	GKGCMC	2 cut(s)	1168, 1352
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	970, 1318, 2471
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	1719
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	278, 450, 1399
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	270, 1352, 2633
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	5 cut(s)	376, 432, 447, 451, 2601
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	6 cut(s)	337, 406, 457, 565, 2314, 2469
BsmAI	GTCTC	3 cut(s)	362, 699, 2526
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	2 cut(s)	2089, 2363
BsnI	GGCC	3 cut(s)	278, 450, 1399
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
Bsp13I	TCCGGA	1 cut(s)	2600
Bsp1407I	TGTACA	1 cut(s)	1659
Bsp143I	GATC	4 cut(s)	1087, 1360, 1845, 2137
Bsp68I	TCGCGA	1 cut(s)	1719
BspANI	GGCC	3 cut(s)	278, 450, 1399
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	2600
BspFNI	CGCG	1 cut(s)	1719
BspHI	TCATGA	2 cut(s)	1573, 2401
BspLI	GGNNCC	1 cut(s)	2130
BspMAI	CTGCAG	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	2132
BspQI	GCTCTTC	1 cut(s)	2406
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	3 cut(s)	708, 940, 2191
BsrGI	TGTACA	1 cut(s)	1659
BssECI	CCNNGG	4 cut(s)	273, 585, 2245, 2313
BssMI	GATC	4 cut(s)	1087, 1360, 1845, 2137
BssNAI	GTATAC	2 cut(s)	1449, 2117
BssNI	GRCGYC	1 cut(s)	1779
BssT1I	CCWWGG	1 cut(s)	585
Bst1107I	GTATAC	2 cut(s)	1449, 2117
Bst2UI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
Bst4CI	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
Bst6I	CTCTTC	3 cut(s)	218, 450, 2406
BstACI	GRCGYC	1 cut(s)	1779
BstAFI	CTTAAG	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	1659
BstC8I	GCNNGC	6 cut(s)	270, 1135, 1250, 1602, 1746, 2052
BstDEI	CTNAG	3 cut(s)	51, 594, 1783
BstF5I	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BstFNI	CGCG	1 cut(s)	1719
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	1090, 1363, 1848, 2140
BstMAI	GTCTC	3 cut(s)	362, 699, 2526
BstMBI	GATC	4 cut(s)	1087, 1360, 1845, 2137
BstMCI	CGRYCG	1 cut(s)	451
BstNI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
BstNSI	RCATGY	3 cut(s)	1604, 1660, 2588
BstPAI	GACNNNNGTC	1 cut(s)	1890
BstSCI	CCNGG	6 cut(s)	272, 375, 450, 2245, 2313, 2488
BstSFI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
BstSLI	GKGCMC	2 cut(s)	1168, 1352
BstUI	CGCG	1 cut(s)	1719
BstV1I	GCAGC	3 cut(s)	970, 1318, 2471
BstV2I	GAAGAC	1 cut(s)	1814
BstX2I	RGATCY	1 cut(s)	2137
BstYI	RGATCY	1 cut(s)	2137
BstZ17I	GTATAC	2 cut(s)	1449, 2117
BstZI	CGGCCG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	1999
BsuRI	GGCC	3 cut(s)	278, 450, 1399
BtgZI	GCGATG	1 cut(s)	2138
BtsCI	GGATG	8 cut(s)	489, 1005, 1018, 1474, 1528, 1687, 1999, 2281
BtsIMutI	CAGTG	4 cut(s)	1166, 1400, 2452, 2633
BtuMI	TCGCGA	1 cut(s)	1719
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	6 cut(s)	270, 1135, 1250, 1602, 1746, 2052
CaiI	CAGNNNCTG	1 cut(s)	2180
CciI	TCATGA	2 cut(s)	1573, 2401
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	276, 556
CseI	GACGC	3 cut(s)	377, 702, 1787
Csp6I	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
CviQI	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
DdeI	CTNAG	3 cut(s)	51, 594, 1783
DpnI	GATC	4 cut(s)	1089, 1362, 1847, 2139
DpnII	GATC	4 cut(s)	1087, 1360, 1845, 2137
DraIII	CACNNNGTG	2 cut(s)	1356, 1668
DriI	GACNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	2 cut(s)	448, 1397
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	3 cut(s)	218, 450, 2406
Eam1105I	GACNNNNNGTC	1 cut(s)	712
EarI	CTCTTC	3 cut(s)	218, 450, 2406
EciI	GGCGGA	2 cut(s)	227, 827
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	3 cut(s)	270, 1938, 2133
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	1496
Eco47I	GGWCC	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	1926, 2055
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	1214
EcoRII	CCWGG	4 cut(s)	272, 2245, 2313, 2488
EcoRV	GATATC	1 cut(s)	1496
EcoT14I	CCWWGG	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	2363
EcoT38I	GRGCYC	3 cut(s)	270, 1938, 2133
ErhI	CCWWGG	1 cut(s)	585
FalI	AAGNNNNNCTT	8 cut(s)	1820, 1852, 2009, 2041, 2417, 2449, 2581, 2613
FaqI	GGGAC	1 cut(s)	232
FauI	CCCGC	2 cut(s)	28, 257
FbaI	TGATCA	3 cut(s)	1087, 1360, 1845
FblI	GTMKAC	2 cut(s)	1448, 2116
Fnu4HI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
FokI	GGATG	8 cut(s)	496, 1012, 1025, 1481, 1535, 1694, 2006, 2268
FriOI	GRGCYC	3 cut(s)	270, 1938, 2133
Fsp4HI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
FspBI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	278, 450, 1399
HapII	CCGG	5 cut(s)	376, 432, 447, 451, 2601
HgaI	GACGC	3 cut(s)	377, 702, 1787
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	1779
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	1885
HindII	GTYRAC	1 cut(s)	1885
HindIII	AAGCTT	1 cut(s)	2389
HinfI	GANTC	4 cut(s)	736, 1310, 1689, 2073
HpaII	CCGG	5 cut(s)	376, 432, 447, 451, 2601
HphI	GGTGA	8 cut(s)	154, 188, 409, 809, 968, 1382, 1784, 2218
Hpy166II	GTNNAC	8 cut(s)	283, 886, 1350, 1449, 1662, 1713, 1885, 2117
Hpy188I	TCNGA	8 cut(s)	387, 549, 1092, 1504, 1945, 2200, 2421, 2478
Hpy8I	GTNNAC	8 cut(s)	283, 886, 1350, 1449, 1662, 1713, 1885, 2117
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	7 cut(s)	34, 866, 1148, 1499, 2419, 2531, 2554
HpyCH4III	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
HpyCH4IV	ACGT	2 cut(s)	2113, 2376
HpyF3I	CTNAG	3 cut(s)	51, 594, 1783
HpySE526I	ACGT	2 cut(s)	2113, 2376
Hsp92I	GRCGYC	1 cut(s)	1779
HspAI	GCGC	1 cut(s)	674
Kpn2I	TCCGGA	1 cut(s)	2600
Ksp22I	TGATCA	3 cut(s)	1087, 1360, 1845
Kzo9I	GATC	4 cut(s)	1087, 1360, 1845, 2137
LguI	GCTCTTC	1 cut(s)	2406
LmnI	GCTCC	5 cut(s)	240, 469, 1204, 1328, 2128
Lsp1109I	GCAGC	3 cut(s)	970, 1318, 2471
LweI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
MaeI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
MaeII	ACGT	2 cut(s)	2113, 2376
MaeIII	GTNAC	2 cut(s)	602, 2372
MalI	GATC	4 cut(s)	1089, 1362, 1847, 2139
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	1087, 1360, 1845, 2137
MboII	GAAGA	8 cut(s)	205, 467, 1748, 1819, 2390, 2423, 2434, 2524
MfeI	CAATTG	1 cut(s)	1888
MflI	RGATCY	1 cut(s)	2137
MhlI	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
MlsI	TGGCCA	1 cut(s)	1399
MluNI	TGGCCA	1 cut(s)	1399
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	4 cut(s)	40, 175, 1971, 2074
Mox20I	TGGCCA	1 cut(s)	1399
Mph1103I	ATGCAT	1 cut(s)	2363
MroI	TCCGGA	1 cut(s)	2600
MroXI	GAANNNNTTC	1 cut(s)	2429
MscI	TGGCCA	1 cut(s)	1399
MseI	TTAA	2 cut(s)	678, 2549
MslI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
Msp20I	TGGCCA	1 cut(s)	1399
MspA1I	CMGCKG	1 cut(s)	352
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	5 cut(s)	376, 432, 447, 451, 2601
MspR9I	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
MunI	CAATTG	1 cut(s)	1888
Mva1269I	GAATGC	2 cut(s)	2089, 2363
MvaI	CCWGG	4 cut(s)	274, 2247, 2315, 2490
MvnI	CGCG	1 cut(s)	1719
NciI	CCSGG	2 cut(s)	377, 452
NdeII	GATC	4 cut(s)	1087, 1360, 1845, 2137
NlaIV	GGNNCC	1 cut(s)	2130
NmeAIII	GCCGAG	1 cut(s)	300
NruI	TCGCGA	1 cut(s)	1719
NsiI	ATGCAT	1 cut(s)	2363
NspI	RCATGY	3 cut(s)	1604, 1660, 2588
PaeI	GCATGC	1 cut(s)	1604
PagI	TCATGA	2 cut(s)	1573, 2401
PciI	ACATGT	1 cut(s)	2584
PciSI	GCTCTTC	1 cut(s)	2406
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 276
PctI	GAATGC	2 cut(s)	2089, 2363
PdmI	GAANNNNTTC	1 cut(s)	2429
PfeI	GAWTC	3 cut(s)	1310, 1689, 2073
PkrI	GCNGC	5 cut(s)	31, 592, 985, 1333, 2461
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
PscI	ACATGT	1 cut(s)	2584
PshAI	GACNNNNGTC	1 cut(s)	1890
PsiI	TTATAA	1 cut(s)	1119
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	272, 2245, 2313, 2488
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	272, 2245, 2313, 2488
PspN4I	GGNNCC	1 cut(s)	2130
PspPI	GGNCC	2 cut(s)	276, 556
PstI	CTGCAG	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	2180
PsuI	RGATCY	1 cut(s)	2137
PvuII	CAGCTG	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	1719
RsaI	GTAC	7 cut(s)	56, 515, 850, 1661, 1979, 2438, 2555
RsaNI	GTAC	7 cut(s)	55, 514, 849, 1660, 1978, 2437, 2554
RseI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
SacI	GAGCTC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	2406
SaqAI	TTAA	2 cut(s)	678, 2549
SatI	GCNGC	5 cut(s)	30, 591, 984, 1332, 2460
Sau3AI	GATC	4 cut(s)	1087, 1360, 1845, 2137
Sau96I	GGNCC	2 cut(s)	276, 556
ScaI	AGTACT	2 cut(s)	56, 2555
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	6 cut(s)	274, 377, 452, 2247, 2315, 2490
SduI	GDGCHC	6 cut(s)	270, 1168, 1352, 1938, 2133, 2633
SfaNI	GCATC	8 cut(s)	990, 1083, 1363, 1541, 2010, 2186, 2425, 2584
SfcI	CTRYAG	4 cut(s)	478, 572, 1563, 2068
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	3 cut(s)	891, 1438, 1599
SmlI	CTYRAG	2 cut(s)	296, 677
SmoI	CTYRAG	2 cut(s)	296, 677
SpeI	ACTAGT	2 cut(s)	1226, 1268
SphI	GCATGC	1 cut(s)	1604
SspI	AATATT	1 cut(s)	1698
SspMI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	6 cut(s)	272, 375, 450, 2245, 2313, 2488
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	5 cut(s)	10, 835, 1386, 2092, 2447
TaiI	ACGT	2 cut(s)	2116, 2379
TaqI	TCGA	9 cut(s)	303, 561, 830, 993, 1144, 1453, 1894, 2251, 2503
TatI	WGTACW	6 cut(s)	54, 513, 848, 1659, 2436, 2553
TauI	GCSGC	2 cut(s)	32, 593
TfiI	GAWTC	3 cut(s)	1310, 1689, 2073
Tru1I	TTAA	2 cut(s)	678, 2549
Tru9I	TTAA	2 cut(s)	678, 2549
TscAI	CASTG	4 cut(s)	1173, 1400, 2452, 2633
TseI	GCWGC	3 cut(s)	983, 1331, 2459
TspGWI	ACGGA	4 cut(s)	280, 1043, 2066, 2551
TspRI	CASTG	4 cut(s)	1173, 1400, 2452, 2633
Vha464I	CTTAAG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	1348
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	1214, 1278
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	3 cut(s)	1604, 1660, 2588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 2253
XmiI	GTMKAC	2 cut(s)	1448, 2116
XmnI	GAANNNNTTC	1 cut(s)	2429
XspI	CTAG	7 cut(s)	105, 740, 1227, 1269, 1622, 2145, 2456
ZrmI	AGTACT	2 cut(s)	56, 2555
Zsp2I	ATGCAT	1 cut(s)	2363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.