Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Reverse (-)

30065214 .. 30065855

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGACAATCCGGACCCACTCCCTGATCTGAACCAAGACCCAATCCCAGACCCGGTTCTCCGTCCCTTTGACTTCAATGAAGAGGCTGACCCAGTGCAAGAAAGCGACACAGTTGATAGCTTGATCCAAAGGTCTGAAGAAATGGAAGAATTTGGAGAGAACAACACGAAGGCTTATGATCGATTGCTTACCAAGCTGCATGCGACGTTCTGGAACAACATGCAGGCGCCACCTTACAAGCCAACAATGCCAGGTGAAGCAATGACATTCTTCCAAGATTCGTTGATATTGACAGAGAAAGGTCACGTTTCTCTGACTCACTGTGTCAATGCTTTTCAAAGTCTTCATCAGCAGGCTTTACACTTGGGCTGCCTTCTTTCAGAAGCCTTGGTAGAATTTCTTCTCTTCCTCTCCAAGTTTCCTTCACTGGCCACCAAGTTGGATAAGTTCAAGATATATTTTCAAGAAATCGGGAAGAACAACCCAGAGATGAAGGTGATTCACAACATAAATGCTATACTCACAACTGCCCAGGATCTTCTACAGAACAATGGAAATGCAATGCCACATGCTCCTTTCGCTGCTCATGATGTGGATGGATTGCTCCACAGGTTTGAACAAGTAATATGGCAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

4.75

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccIII	TCCGGA	1 cut(s)	13
AclWI	GGATC	2 cut(s)	121, 546
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	152, 398
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	79, 341, 454, 467, 620
AjnI	CCWGG	2 cut(s)	253, 534
AluBI	AGCT	2 cut(s)	123, 199
AluI	AGCT	2 cut(s)	123, 199
AlwI	GGATC	2 cut(s)	121, 546
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	199, 372, 584
ApoI	RAATTY	2 cut(s)	152, 398
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	269, 511
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	186, 359, 571
BccI	CCATC	1 cut(s)	593
BciT130I	CCWGG	2 cut(s)	255, 536
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	640
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	233
BisI	GCNGC	3 cut(s)	200, 373, 585
BlsI	GCNGC	3 cut(s)	201, 374, 586
Bme1390I	CCNGG	3 cut(s)	56, 255, 536
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 231
BmrFI	CCNGG	3 cut(s)	56, 255, 536
BmrI	ACTGGG	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	390, 534
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	95, 435
Bse3DI	GCAATG	2 cut(s)	270, 570
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	255, 536
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	390, 534
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	270, 570
BseNI	ACTGG	2 cut(s)	95, 435
BseXI	GCAGC	3 cut(s)	186, 359, 571
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	14, 56
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	28, 126, 181, 538
BspANI	GGCC	1 cut(s)	434
BspDI	ATCGAT	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	18, 231
BspPI	GGATC	2 cut(s)	121, 546
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	270, 570
BsrI	ACTGG	2 cut(s)	95, 435
BssECI	CCNNGG	2 cut(s)	390, 534
BssMI	GATC	4 cut(s)	28, 126, 181, 538
BssNI	GRCGYC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	255, 536
Bst4CI	ACNGT	2 cut(s)	115, 326
Bst6I	CTCTTC	2 cut(s)	78, 413
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	204, 228, 357
BstF5I	GGATG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	31, 129, 184, 541
BstMBI	GATC	4 cut(s)	28, 126, 181, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 250, 581
BstNI	CCWGG	2 cut(s)	255, 536
BstNSI	RCATGY	3 cut(s)	206, 226, 575
BstSCI	CCNGG	3 cut(s)	54, 253, 534
BstSFI	CTRYAG	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	186, 359, 571
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	434
BsuTUI	ATCGAT	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	3 cut(s)	102, 322, 428
Cac8I	GCNNGC	3 cut(s)	204, 228, 357
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	184
CviAII	CATG	4 cut(s)	203, 223, 572, 590
CviJI	RGCY	9 cut(s)	89, 123, 176, 199, 244, 359, 372, 389, 434
CviKI_1	RGCY	9 cut(s)	89, 123, 176, 199, 244, 359, 372, 389, 434
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	4 cut(s)	30, 128, 183, 540
DpnII	GATC	4 cut(s)	28, 126, 181, 538
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	78, 413
EarI	CTCTTC	2 cut(s)	78, 413
Eco130I	CCWWGG	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	253, 534
EcoT14I	CCWWGG	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	206, 226, 575, 593
FaiI	YATR	9 cut(s)	180, 204, 224, 460, 512, 521, 573, 591, 631
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	4 cut(s)	202, 222, 571, 589
Fnu4HI	GCNGC	3 cut(s)	200, 373, 585
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	200, 373, 585
FspBI	CTAG	1 cut(s)	640
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	200, 373, 585
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	14, 56
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	206, 226, 575, 593
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	281, 319, 502
HpaII	CCGG	2 cut(s)	14, 56
HphI	GGTGA	2 cut(s)	269, 511
Hpy188I	TCNGA	4 cut(s)	33, 139, 318, 385
Hpy188III	TCNNGA	6 cut(s)	14, 214, 454, 467, 475, 590
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	166, 386, 435, 490
HpyCH4III	ACNGT	2 cut(s)	115, 326
HpyCH4IV	ACGT	2 cut(s)	209, 309
HpyCH4V	TGCA	4 cut(s)	100, 202, 226, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 250, 581
HpySE526I	ACGT	2 cut(s)	209, 309
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	206, 226, 575, 593
HspAI	GCGC	1 cut(s)	230
KasI	GGCGCC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	28, 126, 181, 538
LmnI	GCTCC	2 cut(s)	580, 612
Lsp1109I	GCAGC	3 cut(s)	186, 359, 571
MaeI	CTAG	1 cut(s)	640
MaeII	ACGT	2 cut(s)	209, 309
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	30, 128, 183, 540
MboI	GATC	4 cut(s)	28, 126, 181, 538
MboII	GAAGA	9 cut(s)	95, 152, 161, 265, 338, 395, 400, 490, 533
MflI	RGATCY	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	2 cut(s)	152, 398
MluNI	TGGCCA	1 cut(s)	434
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	2 cut(s)	79, 422
Mox20I	TGGCCA	1 cut(s)	434
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	2 cut(s)	14, 56
MspR9I	CCNGG	3 cut(s)	56, 255, 536
MvaI	CCWGG	2 cut(s)	255, 536
MwoI	GCNNNNNNNGC	3 cut(s)	196, 250, 581
NarI	GGCGCC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	28, 126, 181, 538
NlaIII	CATG	4 cut(s)	206, 226, 575, 593
NlaIV	GGNNCC	2 cut(s)	18, 231
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	3 cut(s)	206, 226, 575
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	281, 502
PkrI	GCNGC	3 cut(s)	201, 374, 586
PleI	GAGTC	1 cut(s)	313
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	253, 534
PspGI	CCWGG	2 cut(s)	253, 534
PspN4I	GGNNCC	2 cut(s)	18, 231
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	538
SatI	GCNGC	3 cut(s)	200, 373, 585
Sau3AI	GATC	4 cut(s)	28, 126, 181, 538
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	3 cut(s)	56, 255, 536
SfcI	CTRYAG	1 cut(s)	545
SfoI	GGCGCC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	16
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	152, 398
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	54, 253, 534
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	115, 326
TaiI	ACGT	2 cut(s)	212, 312
TaqI	TCGA	1 cut(s)	184
TasI	AATT	2 cut(s)	152, 398
TfiI	GAWTC	2 cut(s)	281, 502
TscAI	CASTG	3 cut(s)	102, 329, 435
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	199, 372, 584
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	96, 338, 509
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	102, 329, 435
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	152, 398
XceI	RCATGY	3 cut(s)	206, 226, 575
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.