RLG00000029237

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008039
Physical Location & Seq
Forward (+)
35019316 .. 35020191
876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029237

Sequence Viewer

Length: 747 bp
ATGGCAGACAATCCGGACCCACTCCCTGATCTGAACCAAGACCCAATCCCAGACCCGGTTCTCCGTCCCTTTGACATCAATGAAGAGGCTGACCCAGTGCAAGAAAGCGACACAGTTGATAGCTTGATCCAAAGGTGTCAAGAAATGGAAGAATTTGGAGAGAACAACACGAAGGCTTATGAGCGATTGCTTACCAAGCTGCATGCAACGTTCTGGAACAACATGCAGGCGCCACCGACCATACATTACAAGCCAAAAATGCCAGAAGCCTTGGTAGAATTTCTTCTCTTCCTCTCCAAGTTTCCTTCACTGGCCACCAAGTTTGATAAGTTCAAGATATATTTTCAAGAAATCGGGAAGAAGAACCCAGAGATGAAGGTGATTCACAACATAAATGCTATAATCACAACTACCCAGGATCTTCTACAGAACAATGGAATTGCAATGCTACATGCTTCTTTTGCTGCTCATGATGTGGATGGATTGCTCCACAGGTTTGAACAAGTAATATGGCAACTCCAGAAAATCTTCACTTATCCTCAGAACCCAAATTCTCTGATCCCAAGTGCTCTTGAAACCTCTCCGATAGCCATTGACCTGAATAATTGCCATAAAGCTATACATGAAGTTTCTCATCTGGTCCACAACTTCAACTCCTCAGCACCATCATTGACTCAGACTGCAGGAAGCAACCTTCAGCAGCTCAAGGCTAGTCTAATGCCCTTCATAAAACAAAACTGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.21

Weight (kDa)

5.4

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 13
AclI AACGTT 1 cut(s) 209
AclWI GGATC 3 cut(s) 121, 426, 553
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 152, 278, 550
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 5 cut(s) 334, 347, 500, 575, 652
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 4 cut(s) 123, 199, 617, 703
AluI AGCT 4 cut(s) 123, 199, 617, 703
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 3 cut(s) 121, 426, 553
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 3 cut(s) 199, 464, 700
ApoI RAATTY 3 cut(s) 152, 278, 550
Asp700I GAANNNNTTC 2 cut(s) 282, 527
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 16, 640
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 2 cut(s) 16, 640
BalI TGGCCA 1 cut(s) 314
BanI GGYRCC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
Bbv12I GWGCWC 1 cut(s) 571
BbvCI CCTCAGC 1 cut(s) 658
BbvI GCAGC 3 cut(s) 186, 451, 712
BccI CCATC 2 cut(s) 473, 673
BciT130I CCWGG 1 cut(s) 416
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 2 cut(s) 425, 681
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 3 cut(s) 200, 465, 701
BlsI GCNGC 3 cut(s) 201, 466, 702
Bme1390I CCNGG 2 cut(s) 56, 416
Bme18I GGWCC 2 cut(s) 16, 640
BmgT120I GGNCC 2 cut(s) 16, 640
BmiI GGNNCC 2 cut(s) 18, 231
BmrFI CCNGG 2 cut(s) 56, 416
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 270, 414
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 95, 315, 743
Bse3DI GCAATG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 270, 414
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 554, 672, 689
BseNI ACTGG 3 cut(s) 95, 315, 743
BseRI GAGGAG 1 cut(s) 646
BseXI GCAGC 3 cut(s) 186, 451, 712
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 14, 56
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 28, 126, 418, 558
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 3 cut(s) 553, 671, 688
BspEI TCCGGA 1 cut(s) 13
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 18, 231
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 3 cut(s) 121, 426, 553
BspT107I GGYRCC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 3 cut(s) 95, 315, 743
BssECI CCNNGG 2 cut(s) 270, 414
BssMI GATC 4 cut(s) 28, 126, 418, 558
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 2 cut(s) 78, 293
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 204, 228
BstDEI CTNAG 4 cut(s) 540, 658, 675, 744
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 31, 129, 421, 561
BstMBI GATC 4 cut(s) 28, 126, 418, 558
BstMWI GCNNNNNNNGC 3 cut(s) 196, 259, 461
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 3 cut(s) 206, 226, 455
BstSCI CCNGG 2 cut(s) 54, 414
BstSFI CTRYAG 2 cut(s) 425, 681
BstV1I GCAGC 3 cut(s) 186, 451, 712
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 102, 308
Cac8I GCNNGC 2 cut(s) 204, 228
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 16, 640
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 5 cut(s) 203, 223, 452, 470, 623
DdeI CTNAG 4 cut(s) 540, 658, 675, 744
DinI GGCGCC 1 cut(s) 231
DpnI GATC 4 cut(s) 30, 128, 420, 560
DpnII GATC 4 cut(s) 28, 126, 418, 558
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 78, 293
EarI CTCTTC 2 cut(s) 78, 293
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 16, 640
Eco57I CTGAAG 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 5 cut(s) 206, 226, 455, 473, 626
FaqI GGGAC 1 cut(s) 51
FatI CATG 5 cut(s) 202, 222, 451, 469, 622
Fnu4HI GCNGC 3 cut(s) 200, 465, 701
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 3 cut(s) 200, 465, 701
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 200, 465, 701
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 14, 56
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 5 cut(s) 206, 226, 455, 473, 626
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 2 cut(s) 382, 673
HpaII CCGG 2 cut(s) 14, 56
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 5 cut(s) 33, 543, 558, 585, 678
Hpy188III TCNNGA 9 cut(s) 14, 140, 214, 334, 347, 355, 470, 520, 572
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 5 cut(s) 166, 315, 370, 704, 733
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 6 cut(s) 100, 202, 206, 226, 443, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 259, 461
HpyF3I CTNAG 4 cut(s) 540, 658, 675, 744
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 5 cut(s) 206, 226, 455, 473, 626
HspAI GCGC 1 cut(s) 230
KasI GGCGCC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 28, 126, 418, 558
LmnI GCTCC 1 cut(s) 492
Lsp1109I GCAGC 3 cut(s) 186, 451, 712
MaeI CTAG 1 cut(s) 711
MaeII ACGT 1 cut(s) 209
MalI GATC 4 cut(s) 30, 128, 420, 560
MboI GATC 4 cut(s) 28, 126, 418, 558
MboII GAAGA 8 cut(s) 95, 161, 275, 280, 370, 373, 413, 520
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 5 cut(s) 152, 278, 438, 550, 604
MluNI TGGCCA 1 cut(s) 314
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 667
MnlI CCTC 5 cut(s) 79, 302, 549, 589, 667
Mox20I TGGCCA 1 cut(s) 314
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 2 cut(s) 282, 527
MscI TGGCCA 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 2 cut(s) 14, 56
MspR9I CCNGG 2 cut(s) 56, 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 196, 259, 461
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 1 cut(s) 56
NdeII GATC 4 cut(s) 28, 126, 418, 558
NlaIII CATG 5 cut(s) 206, 226, 455, 473, 626
NlaIV GGNNCC 2 cut(s) 18, 231
NspI RCATGY 3 cut(s) 206, 226, 455
PaeI GCATGC 1 cut(s) 206
PagI TCATGA 1 cut(s) 469
PdmI GAANNNNTTC 2 cut(s) 282, 527
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 3 cut(s) 201, 466, 702
PleI GAGTC 1 cut(s) 667
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 667
Psp1406I AACGTT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 18, 231
PspPI GGNCC 2 cut(s) 16, 640
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 418
SatI GCNGC 3 cut(s) 200, 465, 701
Sau3AI GATC 4 cut(s) 28, 126, 418, 558
Sau96I GGNCC 2 cut(s) 16, 640
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 56, 416
SduI GDGCHC 1 cut(s) 571
SfcI CTRYAG 2 cut(s) 425, 681
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 2 cut(s) 16, 640
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SphI GCATGC 1 cut(s) 206
Sse9I AATT 5 cut(s) 152, 278, 438, 550, 604
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 54, 414
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 212
TasI AATT 5 cut(s) 152, 278, 438, 550, 604
TfiI GAWTC 1 cut(s) 382
TscAI CASTG 2 cut(s) 102, 315
TseI GCWGC 3 cut(s) 199, 464, 700
TspDTI ATGAA 4 cut(s) 96, 389, 639, 715
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 102, 315
VpaK11BI GGWCC 2 cut(s) 16, 640
XapI RAATTY 3 cut(s) 152, 278, 550
XceI RCATGY 3 cut(s) 206, 226, 455
XmnI GAANNNNTTC 2 cut(s) 282, 527
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.