Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

11601290 .. 11602192

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGCCCATCGACAACAAGAAGAAGGACACGGTGACAATCAGAGCGGTGAGCCACAACGAGGAGGGCCGGAAGATAGTGGAGAAGGCGGAGCTCAACACCCACAACGTCGACACCATCAAGTACGTGGAGAAGAAGCTCATAGACAAGGGAGTGCTGGGCCAGGACCGCCACCCCATCGACGGAATCGGCATCGGGAAGCCCCCGCCGAAGTCTGGCCACGGCGGGAAGTACACGTGGGAGGGGCCCGGCGACGCGGCGGAGTACGAGATGGAACCGGTTCCGGCGGCCATAGACAAGGGGGACCCCAACTATGTGGATGAGGAGGTGGAGGACAAGATTGTTAAGGGGAAGGAGGCTGAGGTGGCGAAGGCAGCGGAGAACAGGGAAGGGGTGGCAAGAGTTGAGGTTGATCCACGCCTCAACGCTCATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

5.59

Isoelectric Point (pI)

9.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	257
AciI	CCGC	9 cut(s)	47, 89, 169, 206, 225, 257, 260, 287, 377
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	2 cut(s)	217, 288
AcvI	CACGTG	1 cut(s)	237
AfaI	GTAC	3 cut(s)	125, 233, 266
AfiI	CCNNNNNNNGG	3 cut(s)	61, 182, 215
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	94, 139
AluI	AGCT	2 cut(s)	94, 139
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	5 cut(s)	67, 160, 217, 245, 288
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	374
AsiGI	ACCGGT	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	6 cut(s)	67, 160, 166, 245, 246, 304
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	46, 61
AvaII	GGWCC	2 cut(s)	166, 304
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	96, 249
BbrPI	CACGTG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	4 cut(s)	17, 125, 185, 265
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	258, 288, 375
BlsI	GCNGC	3 cut(s)	259, 289, 376
Bme1390I	CCNGG	2 cut(s)	164, 249
Bme18I	GGWCC	2 cut(s)	166, 304
BmgT120I	GGNCC	6 cut(s)	67, 160, 166, 245, 246, 304
BmiI	GGNNCC	6 cut(s)	246, 247, 276, 282, 305, 306
BmrFI	CCNGG	2 cut(s)	164, 249
BmsI	GCATC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	2 cut(s)	127, 237
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 182, 215
Bse118I	RCCGGY	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	3 cut(s)	61, 182, 215
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	77, 338
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	5 cut(s)	69, 162, 219, 247, 290
BshTI	ACCGGT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	70, 249, 278, 284
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	61, 182, 215
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	5 cut(s)	69, 162, 219, 247, 290
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	96, 249
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	9 cut(s)	47, 89, 169, 206, 225, 257, 260, 287, 377
BspANI	GGCC	5 cut(s)	69, 162, 219, 247, 290
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	6 cut(s)	246, 247, 276, 282, 305, 306
BspPI	GGATC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	34
BstBAI	YACGTR	2 cut(s)	127, 237
BstDEI	CTNAG	2 cut(s)	360, 435
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 365, 374
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	162, 247
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	69, 162, 219, 247, 290
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	6 cut(s)	67, 160, 166, 245, 246, 304
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	124, 232, 265
CspAI	ACCGGT	1 cut(s)	277
CviQI	GTAC	3 cut(s)	124, 232, 265
DdeI	CTNAG	2 cut(s)	360, 435
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	2 cut(s)	217, 288
EciI	GGCGGA	2 cut(s)	104, 275
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	96, 249
Eco47I	GGWCC	2 cut(s)	166, 304
Eco53kI	GAGCTC	1 cut(s)	94
Eco72I	CACGTG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	245, 304
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	2 cut(s)	96, 249
FaiI	YATR	4 cut(s)	143, 293, 315, 432
FaqI	GGGAC	1 cut(s)	317
FauI	CCCGC	2 cut(s)	213, 218
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	258, 288, 375
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	96, 249
Fsp4HI	GCNGC	3 cut(s)	258, 288, 375
GluI	GCNGC	3 cut(s)	258, 288, 375
GsaI	CCCAGC	1 cut(s)	161
HaeIII	GGCC	5 cut(s)	69, 162, 219, 247, 290
HapII	CCGG	4 cut(s)	70, 249, 278, 284
HgaI	GACGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	4 cut(s)	70, 249, 278, 284
HphI	GGTGA	2 cut(s)	46, 61
Hpy166II	GTNNAC	2 cut(s)	112, 234
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	112, 234
Hpy99I	CGWCG	3 cut(s)	113, 185, 257
HpyAV	CCTTC	5 cut(s)	19, 79, 346, 364, 383
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	3 cut(s)	108, 126, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 365, 374
HpyF3I	CTNAG	2 cut(s)	360, 435
HpySE526I	ACGT	3 cut(s)	108, 126, 236
KflI	GGGWCCC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	83, 143, 149, 176, 201, 262, 291, 297, 370
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	3 cut(s)	108, 126, 236
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	414
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	34, 85, 145
MhlI	GDGCHC	2 cut(s)	96, 249
MlsI	TGGCCA	1 cut(s)	219
MluNI	TGGCCA	1 cut(s)	219
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	4 cut(s)	70, 249, 278, 284
MspR9I	CCNGG	2 cut(s)	164, 249
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	168, 365, 374
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	412
NlaIV	GGNNCC	6 cut(s)	246, 247, 276, 282, 305, 306
NmuCI	GTSAC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	259, 289, 376
PmaCI	CACGTG	1 cut(s)	237
PmlI	CACGTG	1 cut(s)	237
Ppu21I	YACGTR	2 cut(s)	127, 237
PpuMI	RGGWCCY	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	6 cut(s)	246, 247, 276, 282, 305, 306
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	6 cut(s)	67, 160, 166, 245, 246, 304
PspPPI	RGGWCCY	1 cut(s)	304
RsaI	GTAC	3 cut(s)	125, 233, 266
RsaNI	GTAC	3 cut(s)	124, 232, 265
SacI	GAGCTC	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	258, 288, 375
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	6 cut(s)	67, 160, 166, 245, 246, 304
ScrFI	CCNGG	2 cut(s)	164, 249
SduI	GDGCHC	2 cut(s)	96, 249
SetI	ASST	8 cut(s)	96, 111, 129, 141, 239, 330, 366, 411
SfaNI	GCATC	1 cut(s)	201
SinI	GGWCC	2 cut(s)	166, 304
SsiI	CCGC	9 cut(s)	47, 89, 169, 206, 225, 257, 260, 287, 377
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	162, 247
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	3 cut(s)	111, 129, 239
TaqI	TCGA	3 cut(s)	12, 111, 180
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	260, 290
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	198
VpaK11BI	GGWCC	2 cut(s)	166, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.