Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

1597956 .. 1598420

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1016000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGCCCATCGACGGCAAGAAGGACACGGTGACGATCCGGGCGGTGAGCCACGACGAGGATGGCCGGAAGAGGGTGGAGAAGATGAAGCTCCACACCCACAACATCGACACCGTCAAGTACGTCGAGAAGAAGCTCATAGACAAAGGCGTGCAGCGACTGGACCGCCACCCGAAAGACGGGACTGGGATCGGGAGGCCTCCGCCCAAGTCTGGCCATGGTGGCAAGTACACGTGGGAGGGGCCTGGTGGCGTGGCGGATGATGTGACGGACCCGGTCCCGGTGGCGATCGACGAGAGGGATCCGAACTACGTGGATGAGGAGAAGGAGGAAATGATCGTGAAGGGGGAGGATGATGACGTGGCGGGGCTGGTTGTGGGGGAGGTGGAGGTGGCGAAGGCGGCGGAGGACAAGGAGGGGTTTAGTAGAGTTGAGGTGGTTAATCCTCGTCACCTCAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.04

Weight (kDa)

5.55

Isoelectric Point (pI)

21.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	44, 166, 203, 257, 365, 401, 404
AclWI	GGATC	4 cut(s)	31, 197, 296, 309
AcoI	YGGCCR	2 cut(s)	64, 214
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	122, 230
AfiI	CCNNNNNNNGG	6 cut(s)	14, 58, 73, 179, 212, 280
AflIII	ACRYGT	1 cut(s)	231
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	91, 136
AluI	AGCT	2 cut(s)	91, 136
AlwI	GGATC	4 cut(s)	31, 197, 296, 309
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	4 cut(s)	64, 197, 214, 242
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	4 cut(s)	163, 242, 271, 277
AsuC2I	CCSGG	3 cut(s)	41, 275, 281
AsuHPI	GGTGA	3 cut(s)	43, 58, 443
AvaII	GGWCC	3 cut(s)	163, 271, 277
BalI	TGGCCA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	17, 56
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	3 cut(s)	41, 275, 281
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	155, 402
BlsI	GCNGC	2 cut(s)	156, 403
Bme1390I	CCNGG	4 cut(s)	41, 246, 275, 281
Bme18I	GGWCC	3 cut(s)	163, 271, 277
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	4 cut(s)	163, 242, 271, 277
BmiI	GGNNCC	4 cut(s)	243, 273, 279, 303
BmrFI	CCNGG	4 cut(s)	41, 246, 275, 281
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpuMI	CCSGG	3 cut(s)	41, 275, 281
BsaAI	YACGTR	2 cut(s)	234, 313
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 58, 73, 179, 212, 280
Bse1I	ACTGG	2 cut(s)	165, 190
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	4 cut(s)	67, 265, 322, 358
BseLI	CCNNNNNNNGG	6 cut(s)	14, 58, 73, 179, 212, 280
BseNI	ACTGG	2 cut(s)	165, 190
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	4 cut(s)	66, 199, 216, 244
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	4 cut(s)	40, 67, 275, 281
BslFI	GGGAC	2 cut(s)	196, 263
BslI	CCNNNNNNNGG	6 cut(s)	14, 58, 73, 179, 212, 280
BsmFI	GGGAC	2 cut(s)	196, 263
BsnI	GGCC	4 cut(s)	66, 199, 216, 244
Bsp143I	GATC	5 cut(s)	36, 189, 288, 301, 336
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	7 cut(s)	44, 166, 203, 257, 365, 401, 404
BspANI	GGCC	4 cut(s)	66, 199, 216, 244
BspLI	GGNNCC	4 cut(s)	243, 273, 279, 303
BspPI	GGATC	4 cut(s)	31, 197, 296, 309
BsrI	ACTGG	2 cut(s)	165, 190
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	5 cut(s)	36, 189, 288, 301, 336
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	31, 115
Bst6I	CTCTTC	1 cut(s)	65
BstBAI	YACGTR	2 cut(s)	234, 313
BstC8I	GCNNGC	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	4 cut(s)	67, 265, 322, 358
BstKTI	GATC	5 cut(s)	39, 192, 291, 304, 339
BstMBI	GATC	5 cut(s)	36, 189, 288, 301, 336
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 401
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	4 cut(s)	39, 244, 273, 279
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	66, 199, 216, 244
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	4 cut(s)	67, 265, 322, 358
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	4 cut(s)	163, 242, 271, 277
Csp6I	GTAC	2 cut(s)	121, 229
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	9 cut(s)	7, 51, 66, 91, 136, 199, 216, 244, 370
CviKI_1	RGCY	9 cut(s)	7, 51, 66, 91, 136, 199, 216, 244, 370
CviQI	GTAC	2 cut(s)	121, 229
DpnI	GATC	5 cut(s)	38, 191, 290, 303, 338
DpnII	GATC	5 cut(s)	36, 189, 288, 301, 336
EaeI	YGGCCR	2 cut(s)	64, 214
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	3 cut(s)	192, 272, 419
Eco130I	CCWWGG	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	163, 271, 277
Eco72I	CACGTG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	140, 219
FaqI	GGGAC	2 cut(s)	196, 263
FatI	CATG	1 cut(s)	217
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	155, 402
FokI	GGATG	4 cut(s)	74, 272, 329, 365
Fsp4HI	GCNGC	2 cut(s)	155, 402
GluI	GCNGC	2 cut(s)	155, 402
HaeIII	GGCC	4 cut(s)	66, 199, 216, 244
HapII	CCGG	4 cut(s)	40, 67, 275, 281
Hin1II	CATG	1 cut(s)	221
HpaII	CCGG	4 cut(s)	40, 67, 275, 281
HphI	GGTGA	3 cut(s)	43, 58, 443
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	127, 193, 340
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	4 cut(s)	17, 59, 128, 296
HpyAV	CCTTC	4 cut(s)	16, 319, 337, 391
HpyCH4III	ACNGT	2 cut(s)	31, 115
HpyCH4IV	ACGT	4 cut(s)	123, 233, 312, 360
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 401
HpySE526I	ACGT	4 cut(s)	123, 233, 312, 360
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	5 cut(s)	36, 189, 288, 301, 336
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	166
MaeII	ACGT	4 cut(s)	123, 233, 312, 360
MaeIII	GTNAC	3 cut(s)	31, 265, 449
MalI	GATC	5 cut(s)	38, 191, 290, 303, 338
MboI	GATC	5 cut(s)	36, 189, 288, 301, 336
MboII	GAAGA	3 cut(s)	82, 94, 142
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	216
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	2 cut(s)	441, 463
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	4 cut(s)	40, 67, 275, 281
MspR9I	CCNGG	4 cut(s)	41, 246, 275, 281
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	222, 401
NciI	CCSGG	3 cut(s)	41, 275, 281
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	36, 189, 288, 301, 336
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	4 cut(s)	243, 273, 279, 303
NmuCI	GTSAC	3 cut(s)	31, 265, 449
PceI	AGGCCT	1 cut(s)	199
PflFI	GACNNNGTC	2 cut(s)	113, 275
PkrI	GCNGC	2 cut(s)	156, 403
Ple19I	CGATCG	1 cut(s)	291
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
Ppu21I	YACGTR	2 cut(s)	234, 313
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	4 cut(s)	243, 273, 279, 303
PspPI	GGNCC	4 cut(s)	163, 242, 271, 277
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	2 cut(s)	113, 275
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	122, 230
RsaNI	GTAC	2 cut(s)	121, 229
SaqAI	TTAA	2 cut(s)	441, 463
SatI	GCNGC	2 cut(s)	155, 402
Sau3AI	GATC	5 cut(s)	36, 189, 288, 301, 336
Sau96I	GGNCC	4 cut(s)	163, 242, 271, 277
ScrFI	CCNGG	4 cut(s)	41, 246, 275, 281
SinI	GGWCC	3 cut(s)	163, 271, 277
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	7 cut(s)	44, 166, 203, 257, 365, 401, 404
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	4 cut(s)	39, 244, 273, 279
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	31, 115
TaiI	ACGT	4 cut(s)	126, 236, 315, 363
TaqI	TCGA	4 cut(s)	12, 108, 126, 291
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	441, 463
Tru9I	TTAA	2 cut(s)	441, 463
TseFI	GTSAC	3 cut(s)	31, 265, 449
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	3 cut(s)	31, 265, 449
TspDTI	ATGAA	2 cut(s)	17, 101
TspGWI	ACGGA	1 cut(s)	284
Tth111I	GACNNNGTC	2 cut(s)	113, 275
VpaK11BI	GGWCC	3 cut(s)	163, 271, 277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.