Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

1102755 .. 1103135

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGCTCCACACCCACAACATCGACACCGTCAAGTACGTCGAGAAGAAGCTCATAGACAAAGGCGTGCAGCGACTGGACCGCCACCCGAAAGACGGGACTAGAATCGGGAAGCCTCCGCCCAAGTCGGGCCATGGTGGCAAGTACACGTGGGAGGGGCCTGGTGGCGTGGTGGATGATGTGATGGACCCGGTCCCGGTGGCGATCGACGAGGGGGATCCGAACTACGTGGATGAGGAGACGGAGGAGAGGATCGTGAAGGGGGAAGATGTTGACGTGGCGGGGCTGGTTGTGGGGGAGGTGGAGGTGGCGAAGGCGGCGGAGGACAAGGAGGGGGTTAGTAGAGTTGAGGTGGTTAATCCTCGTCACCTCAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.81

Weight (kDa)

4.99

Isoelectric Point (pI)

19.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	82, 119, 281, 317, 320
AclWI	GGATC	3 cut(s)	212, 225, 260
AcvI	CACGTG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	38, 146
AfiI	CCNNNNNNNGG	3 cut(s)	95, 128, 196
AflIII	ACRYGT	1 cut(s)	147
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	7, 52
AluI	AGCT	2 cut(s)	7, 52
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	212, 225, 260
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	130, 158
ApeKI	GCWGC	1 cut(s)	70
AspS9I	GGNCC	5 cut(s)	79, 130, 158, 187, 193
AsuC2I	CCSGG	2 cut(s)	191, 197
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	3 cut(s)	79, 187, 193
BamHI	GGATCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	191, 197
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	71, 318
BlsI	GCNGC	2 cut(s)	72, 319
Bme1390I	CCNGG	3 cut(s)	162, 191, 197
Bme18I	GGWCC	3 cut(s)	79, 187, 193
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	5 cut(s)	79, 130, 158, 187, 193
BmiI	GGNNCC	4 cut(s)	159, 189, 195, 219
BmrFI	CCNGG	3 cut(s)	162, 191, 197
BpuMI	CCSGG	2 cut(s)	191, 197
BsaAI	YACGTR	2 cut(s)	150, 229
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 128, 196
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	181, 238
BseLI	CCNNNNNNNGG	3 cut(s)	95, 128, 196
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	251, 260
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	132, 160
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	191, 197
BslFI	GGGAC	2 cut(s)	112, 179
BslI	CCNNNNNNNGG	3 cut(s)	95, 128, 196
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	112, 179
BsnI	GGCC	2 cut(s)	132, 160
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	204, 217, 252
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	5 cut(s)	82, 119, 281, 317, 320
BspANI	GGCC	2 cut(s)	132, 160
BspLI	GGNNCC	4 cut(s)	159, 189, 195, 219
BspPI	GGATC	3 cut(s)	212, 225, 260
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	204, 217, 252
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	31
BstBAI	YACGTR	2 cut(s)	150, 229
BstC8I	GCNNGC	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	181, 238
BstKTI	GATC	3 cut(s)	207, 220, 255
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	204, 217, 252
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 317
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	160, 189, 195
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	132, 160
BtgI	CCRYGG	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	181, 238
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr13I	GGNCC	5 cut(s)	79, 130, 158, 187, 193
Csp6I	GTAC	2 cut(s)	37, 145
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	6 cut(s)	7, 52, 115, 132, 160, 286
CviKI_1	RGCY	6 cut(s)	7, 52, 115, 132, 160, 286
CviQI	GTAC	2 cut(s)	37, 145
DpnI	GATC	3 cut(s)	206, 219, 254
DpnII	GATC	3 cut(s)	204, 217, 252
EciI	GGCGGA	2 cut(s)	108, 335
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	79, 187, 193
Eco53kI	GAGCTC	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	137
FaiI	YATR	2 cut(s)	56, 135
FaqI	GGGAC	2 cut(s)	112, 179
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	71, 318
FokI	GGATG	2 cut(s)	188, 245
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	71, 318
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	71, 318
HaeIII	GGCC	2 cut(s)	132, 160
HapII	CCGG	2 cut(s)	191, 197
Hin1II	CATG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	191, 197
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	147, 274
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	43, 109, 256
Hpy8I	GTNNAC	2 cut(s)	147, 274
Hpy99I	CGWCG	2 cut(s)	44, 212
HpyAV	CCTTC	2 cut(s)	253, 307
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	4 cut(s)	39, 149, 228, 276
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 317
HpySE526I	ACGT	4 cut(s)	39, 149, 228, 276
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	204, 217, 252
LmnI	GCTCC	2 cut(s)	4, 12
LpnPI	CCDG	6 cut(s)	62, 147, 174, 204, 210, 272
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	4 cut(s)	39, 149, 228, 276
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	206, 219, 254
MboI	GATC	3 cut(s)	204, 217, 252
MboII	GAAGA	2 cut(s)	58, 278
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	9
MseI	TTAA	2 cut(s)	357, 379
MspI	CCGG	2 cut(s)	191, 197
MspR9I	CCNGG	3 cut(s)	162, 191, 197
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	138, 317
NciI	CCSGG	2 cut(s)	191, 197
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	3 cut(s)	204, 217, 252
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	4 cut(s)	159, 189, 195, 219
NmuCI	GTSAC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	105
PflFI	GACNNNGTC	2 cut(s)	29, 191
PkrI	GCNGC	2 cut(s)	72, 319
Ple19I	CGATCG	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
Ppu21I	YACGTR	2 cut(s)	150, 229
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	4 cut(s)	159, 189, 195, 219
PspPI	GGNCC	5 cut(s)	79, 130, 158, 187, 193
PstNI	CAGNNNCTG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	217
PsyI	GACNNNGTC	2 cut(s)	29, 191
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	2 cut(s)	38, 146
RsaNI	GTAC	2 cut(s)	37, 145
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	357, 379
SatI	GCNGC	2 cut(s)	71, 318
Sau3AI	GATC	3 cut(s)	204, 217, 252
Sau96I	GGNCC	5 cut(s)	79, 130, 158, 187, 193
ScrFI	CCNGG	3 cut(s)	162, 191, 197
SduI	GDGCHC	1 cut(s)	9
SinI	GGWCC	3 cut(s)	79, 187, 193
SsiI	CCGC	5 cut(s)	82, 119, 281, 317, 320
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	160, 189, 195
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	4 cut(s)	42, 152, 231, 279
TaqI	TCGA	3 cut(s)	24, 42, 207
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	357, 379
Tru9I	TTAA	2 cut(s)	357, 379
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	257
Tth111I	GACNNNGTC	2 cut(s)	29, 191
VpaK11BI	GGWCC	3 cut(s)	79, 187, 193
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.