Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

16644970 .. 16645774

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAACCCATCGACGGCAAGAAGGACAAGGTGACAATCCGAGCGGTGAGCCACAACGAGGAGGGCCGGAAGATAGTGGAGAAGACGGAGCTCAAAACCCGCAACATCGACACCATCAAGTACGTGGAGAAGAAGCTCGTAGACATGGGATTGCAGGGCCGGGAGCGCCACCCCATCGATGGATTGGGAATCGGACAACCGCCGCCGAAGTCAGGCCACGGCGGGAAGTACACGTGGGAGGGACCCGGCGACATGGCGGAGAACGAGCTGGACCCAGTCCCGGCGGCCATAGATGAGAGGGATCCCAACTATGAAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

6.3

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	7 cut(s)	44, 100, 200, 203, 222, 257, 284
AclWI	GGATC	2 cut(s)	296, 309
AcoI	YGGCCR	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	122, 230
AfiI	CCNNNNNNNGG	5 cut(s)	14, 58, 179, 212, 280
AflIII	ACRYGT	1 cut(s)	231
AluBI	AGCT	3 cut(s)	91, 136, 268
AluI	AGCT	3 cut(s)	91, 136, 268
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	296, 309
AoxI	GGCC	4 cut(s)	64, 157, 214, 285
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	4 cut(s)	64, 157, 242, 271
AsuC2I	CCSGG	3 cut(s)	161, 246, 281
AsuHPI	GGTGA	2 cut(s)	43, 58
AvaII	GGWCC	2 cut(s)	242, 271
BamHI	GGATCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	4 cut(s)	17, 122, 173, 182
BceAI	ACGGC	2 cut(s)	31, 235
BcnI	CCSGG	3 cut(s)	161, 246, 281
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	2 cut(s)	203, 285
BlsI	GCNGC	2 cut(s)	204, 286
Bme1390I	CCNGG	3 cut(s)	161, 246, 281
Bme18I	GGWCC	2 cut(s)	242, 271
BmgT120I	GGNCC	4 cut(s)	64, 157, 242, 271
BmiI	GGNNCC	4 cut(s)	243, 244, 273, 303
BmrFI	CCNGG	3 cut(s)	161, 246, 281
BmrI	ACTGGG	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	161, 246, 281
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	2 cut(s)	124, 234
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 58, 179, 212, 280
Bse1I	ACTGG	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	5 cut(s)	14, 58, 179, 212, 280
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	66, 159, 216, 287
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	67, 160, 246, 281
BslFI	GGGAC	2 cut(s)	255, 263
BslI	CCNNNNNNNGG	5 cut(s)	14, 58, 179, 212, 280
BsmFI	GGGAC	2 cut(s)	255, 263
BsnI	GGCC	4 cut(s)	66, 159, 216, 287
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	7 cut(s)	44, 100, 200, 203, 222, 257, 284
BspANI	GGCC	4 cut(s)	66, 159, 216, 287
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	243, 244, 273, 303
BspPI	GGATC	2 cut(s)	296, 309
BsrBI	CCGCTC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	301
BstBAI	YACGTR	2 cut(s)	124, 234
BstDSI	CCRYGG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSCI	CCNGG	3 cut(s)	159, 244, 279
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	66, 159, 216, 287
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	4 cut(s)	64, 157, 242, 271
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	121, 229
CviAII	CATG	2 cut(s)	145, 253
CviJI	RGCY	8 cut(s)	51, 66, 91, 136, 159, 216, 268, 287
CviKI_1	RGCY	8 cut(s)	51, 66, 91, 136, 159, 216, 268, 287
CviQI	GTAC	2 cut(s)	121, 229
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	242, 271
Eco53kI	GAGCTC	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	2 cut(s)	148, 256
FaiI	YATR	4 cut(s)	146, 254, 290, 312
FaqI	GGGAC	2 cut(s)	255, 263
FatI	CATG	2 cut(s)	144, 252
FauI	CCCGC	2 cut(s)	107, 215
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	203, 285
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	203, 285
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	203, 285
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	66, 159, 216, 287
HapII	CCGG	4 cut(s)	67, 160, 246, 281
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	148, 256
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	4 cut(s)	67, 160, 246, 281
HphI	GGTGA	2 cut(s)	43, 58
Hpy166II	GTNNAC	2 cut(s)	142, 231
Hpy188I	TCNGA	2 cut(s)	41, 194
Hpy8I	GTNNAC	2 cut(s)	142, 231
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	123, 233
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpySE526I	ACGT	2 cut(s)	123, 233
Hsp92II	CATG	2 cut(s)	148, 256
HspAI	GCGC	1 cut(s)	166
KflI	GGGWCCC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	88, 163
LpnPI	CCDG	8 cut(s)	80, 140, 173, 198, 254, 259, 288, 294
MaeII	ACGT	2 cut(s)	123, 233
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	303
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	82, 94, 142
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	315
MnlI	CCTC	4 cut(s)	52, 55, 232, 291
MseI	TTAA	1 cut(s)	318
MspI	CCGG	4 cut(s)	67, 160, 246, 281
MspR9I	CCNGG	3 cut(s)	161, 246, 281
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	3 cut(s)	161, 246, 281
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	148, 256
NlaIV	GGNNCC	4 cut(s)	243, 244, 273, 303
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	204, 286
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
Ppu21I	YACGTR	2 cut(s)	124, 234
PpuMI	RGGWCCY	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	243, 244, 273, 303
PspPI	GGNCC	4 cut(s)	64, 157, 242, 271
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	122, 230
RsaNI	GTAC	2 cut(s)	121, 229
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	203, 285
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	4 cut(s)	64, 157, 242, 271
ScrFI	CCNGG	3 cut(s)	161, 246, 281
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	6 cut(s)	33, 93, 126, 138, 236, 270
SinI	GGWCC	2 cut(s)	242, 271
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	7 cut(s)	44, 100, 200, 203, 222, 257, 284
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	159, 244, 279
TaiI	ACGT	2 cut(s)	126, 236
TaqI	TCGA	3 cut(s)	12, 108, 177
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	2 cut(s)	205, 287
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	101
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	242, 271
XcmI	CCANNNNNNNNNTGG	3 cut(s)	121, 176, 181
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.