Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Reverse (-)

32106108 .. 32106864

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAACCCATCGACGGCAAGAAAGACAAGGTGACAATCCGAGCGGTGAGCCACAACGAGGAGGGCCGGAAGATAGTGGAGAAGACGGAGCTCAAAACCCGCAACATCGACACCATCAAGTACGTGGTGAAGAAGCACGTAGACAAGGGCTGTCAAGGCCGGGAGCGCCACCCCATCGATGGATTGGGAATCGGACAACCGCCGCCGAAGTCGGGCCACGGCGGGAAGTACACGTGGGAAGGACCCGGCGACATGACGGAGAACGAGCTGGACCCGGTCCCGGCGGCCATAGATGAGAGGGATCCCAACTATGTGGATGAGGAGGAGGAGGAGAGGATTGTGAAGGGGGAGGAGGCTGACGTGGCGGAAATGGTTGTGAAGGGGGAGGAGGCTGACGTGGCGGAAATGGTTGTGGGGGAGGTGGAGGTGGCGAAGGCGGCGGAGAACAGGGAGGGGGTGGCTAGAATTGAGGTTGATCCAAAGCTCGGTGCTCAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.27

Weight (kDa)

4.89

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	296, 309, 470
AcoI	YGGCCR	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	122, 230
AfiI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 485
AflIII	ACRYGT	1 cut(s)	231
AjiI	CACGTC	2 cut(s)	361, 397
AluBI	AGCT	3 cut(s)	91, 268, 484
AluI	AGCT	3 cut(s)	91, 268, 484
Alw21I	GWGCWC	2 cut(s)	93, 493
AlwI	GGATC	3 cut(s)	296, 309, 470
AoxI	GGCC	4 cut(s)	64, 157, 214, 285
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	5 cut(s)	64, 214, 242, 271, 277
AsuC2I	CCSGG	4 cut(s)	161, 246, 275, 281
AsuHPI	GGTGA	3 cut(s)	43, 58, 139
AvaII	GGWCC	3 cut(s)	242, 271, 277
BamHI	GGATCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	93, 493
BccI	CCATC	4 cut(s)	17, 122, 173, 182
BceAI	ACGGC	3 cut(s)	31, 235, 481
BcnI	CCSGG	4 cut(s)	161, 246, 275, 281
BfaI	CTAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	3 cut(s)	203, 285, 438
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	3 cut(s)	204, 286, 439
Bme1390I	CCNGG	4 cut(s)	161, 246, 275, 281
Bme18I	GGWCC	3 cut(s)	242, 271, 277
BmgBI	CACGTC	2 cut(s)	361, 397
BmgT120I	GGNCC	5 cut(s)	64, 214, 242, 271, 277
BmiI	GGNNCC	4 cut(s)	244, 273, 279, 303
BmrFI	CCNGG	4 cut(s)	161, 246, 275, 281
BpiI	GAAGAC	1 cut(s)	89
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuMI	CCSGG	4 cut(s)	161, 246, 275, 281
Bsa29I	ATCGAT	1 cut(s)	177
BsaAI	YACGTR	3 cut(s)	124, 139, 234
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 485
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 485
BseRI	GAGGAG	7 cut(s)	74, 335, 338, 341, 344, 365, 401
BshFI	GGCC	4 cut(s)	66, 159, 216, 287
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	93, 493
BsiSI	CCGG	5 cut(s)	67, 160, 246, 275, 281
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	6 cut(s)	14, 58, 179, 212, 280, 485
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	66, 159, 216, 287
Bsp1286I	GDGCHC	2 cut(s)	93, 493
Bsp143I	GATC	2 cut(s)	301, 475
Bsp1720I	GCTNAGC	1 cut(s)	492
BspANI	GGCC	4 cut(s)	66, 159, 216, 287
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	244, 273, 279, 303
BspPI	GGATC	3 cut(s)	296, 309, 470
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	301, 475
BstBAI	YACGTR	3 cut(s)	124, 139, 234
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	304, 478
BstMBI	GATC	2 cut(s)	301, 475
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 165, 362, 398, 437
BstSCI	CCNGG	4 cut(s)	159, 244, 273, 279
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	66, 159, 216, 287
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	2 cut(s)	361, 397
BtsCI	GGATG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	5 cut(s)	64, 214, 242, 271, 277
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	121, 229
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	2 cut(s)	121, 229
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	2 cut(s)	303, 477
DpnII	GATC	2 cut(s)	301, 475
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	3 cut(s)	380, 416, 455
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	242, 271, 277
Eco53kI	GAGCTC	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	254, 290, 312
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	252
FauI	CCCGC	2 cut(s)	107, 215
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	203, 285, 438
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	203, 285, 438
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	203, 285, 438
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	66, 159, 216, 287
HapII	CCGG	5 cut(s)	67, 160, 246, 275, 281
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	5 cut(s)	67, 160, 246, 275, 281
HphI	GGTGA	3 cut(s)	43, 58, 139
Hpy166II	GTNNAC	2 cut(s)	142, 231
Hpy188I	TCNGA	2 cut(s)	41, 194
Hpy8I	GTNNAC	2 cut(s)	142, 231
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	233, 337, 373, 427
HpyCH4IV	ACGT	5 cut(s)	123, 138, 233, 360, 396
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 165, 362, 398, 437
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	5 cut(s)	123, 138, 233, 360, 396
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	301, 475
LmnI	GCTCC	2 cut(s)	88, 163
LpnPI	CCDG	7 cut(s)	80, 173, 254, 259, 288, 294, 433
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	5 cut(s)	123, 138, 233, 360, 396
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	303, 477
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	2 cut(s)	301, 475
MboII	GAAGA	3 cut(s)	82, 94, 142
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	93, 493
MluCI	AATT	1 cut(s)	465
MspI	CCGG	5 cut(s)	67, 160, 246, 275, 281
MspR9I	CCNGG	4 cut(s)	161, 246, 275, 281
MwoI	GCNNNNNNNGC	5 cut(s)	156, 165, 362, 398, 437
NciI	CCSGG	4 cut(s)	161, 246, 275, 281
NdeII	GATC	2 cut(s)	301, 475
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	4 cut(s)	244, 273, 279, 303
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	204, 286, 439
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
Ppu21I	YACGTR	3 cut(s)	124, 139, 234
PpuMI	RGGWCCY	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	242
PspCI	CACGTG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	244, 273, 279, 303
PspPI	GGNCC	5 cut(s)	64, 214, 242, 271, 277
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	122, 230
RsaNI	GTAC	2 cut(s)	121, 229
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	3 cut(s)	203, 285, 438
Sau3AI	GATC	2 cut(s)	301, 475
Sau96I	GGNCC	5 cut(s)	64, 214, 242, 271, 277
ScrFI	CCNGG	4 cut(s)	161, 246, 275, 281
SduI	GDGCHC	2 cut(s)	93, 493
SinI	GGWCC	3 cut(s)	242, 271, 277
Sse9I	AATT	1 cut(s)	465
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	159, 244, 273, 279
TaiI	ACGT	5 cut(s)	126, 141, 236, 363, 399
TaqI	TCGA	3 cut(s)	12, 108, 177
TasI	AATT	1 cut(s)	465
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	3 cut(s)	205, 287, 440
TfiI	GAWTC	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	101, 272
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	3 cut(s)	242, 271, 277
XcmI	CCANNNNNNNNNTGG	3 cut(s)	121, 176, 181
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.