Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

1253224 .. 1253688

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1014200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGCCAATCGACGACAAGAAAGACAAGGTGACGATCGGGGCGGTGACCCACGACGAGGAGGGCCGTAAGAGGGTGGAGAAGATGGAGCTCCCCACCCACAACATCGACAGCATCAAGTACGTCGAGAAGAAGCTCATAGACAAAGGCGTGCAGCGACTCGAACGCCACCCGAGAGACGGGACTGGGATCGGGAGGCCGCCGCCTAAGTCGGGCCACGGCGGCAAGTACACTTGGGAGGGACCTGGCGACGAGGTGGAAGTTGAGATGGACCCGGTGCCGCCGGCGATCGACGAGAGGGACCCGAACTACGTGGATGAGGAGACGGAGAAGAAGATTGTGAAGGGGGAGGACGATGATGCGGCGGGGTTGGTTGTGGGGGAGGTGGAGGTAGCGAAGGCGGCGAAGGACAGGGAGGGGGTTGCTAGAATTGAGGTGGTTAGTCCTCGTCACCTCCAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.12

Weight (kDa)

5.22

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	8 cut(s)	44, 200, 203, 222, 281, 362, 365, 401
AclWI	GGATC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	122, 230
AfiI	CCNNNNNNNGG	4 cut(s)	58, 73, 179, 212
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	91, 136
AluI	AGCT	2 cut(s)	91, 136
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	171, 317
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	3 cut(s)	64, 197, 214
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	5 cut(s)	64, 214, 242, 271, 301
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	43, 58, 443
AvaI	CYCGRG	1 cut(s)	172
AvaII	GGWCC	3 cut(s)	242, 271, 301
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	79, 262
BceAI	ACGGC	2 cut(s)	51, 235
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	171, 317
BfaI	CTAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	7 cut(s)	155, 200, 203, 223, 281, 363, 402
BlsI	GCNGC	7 cut(s)	156, 201, 204, 224, 282, 364, 403
Bme1390I	CCNGG	2 cut(s)	246, 275
Bme18I	GGWCC	3 cut(s)	242, 271, 301
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	64, 214, 242, 271, 301
BmiI	GGNNCC	5 cut(s)	243, 273, 279, 302, 303
BmrFI	CCNGG	2 cut(s)	246, 275
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	123, 349
BmuI	ACTGGG	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 73, 179, 212
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	4 cut(s)	58, 73, 179, 212
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	74, 335
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	39, 291
BshFI	GGCC	3 cut(s)	66, 199, 216
BshNI	GGYRCC	1 cut(s)	277
BsiEI	CGRYCG	2 cut(s)	39, 291
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	275, 284
BslFI	GGGAC	3 cut(s)	196, 255, 314
BslI	CCNNNNNNNGG	4 cut(s)	58, 73, 179, 212
BsmAI	GTCTC	2 cut(s)	171, 317
BsmBI	CGTCTC	2 cut(s)	171, 317
BsmFI	GGGAC	3 cut(s)	196, 255, 314
BsnI	GGCC	3 cut(s)	66, 199, 216
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	36, 189, 288
BspACI	CCGC	8 cut(s)	44, 200, 203, 222, 281, 362, 365, 401
BspANI	GGCC	3 cut(s)	66, 199, 216
BspLI	GGNNCC	5 cut(s)	243, 273, 279, 302, 303
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	36, 189, 288
Bst2UI	CCWGG	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	152, 285
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	39, 192, 291
BstMAI	GTCTC	2 cut(s)	171, 317
BstMBI	GATC	3 cut(s)	36, 189, 288
BstMCI	CGRYCG	2 cut(s)	39, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 401
BstNI	CCWGG	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	244, 273
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	66, 199, 216
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	152, 285
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	5 cut(s)	64, 214, 242, 271, 301
Csp6I	GTAC	2 cut(s)	121, 229
CviJI	RGCY	6 cut(s)	7, 66, 91, 136, 199, 216
CviKI_1	RGCY	6 cut(s)	7, 66, 91, 136, 199, 216
CviQI	GTAC	2 cut(s)	121, 229
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	38, 191, 290
DpnII	GATC	3 cut(s)	36, 189, 288
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	242, 271, 301
Eco53kI	GAGCTC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	242, 301
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	93
Esp3I	CGTCTC	2 cut(s)	171, 317
FaiI	YATR	1 cut(s)	140
FaqI	GGGAC	3 cut(s)	196, 255, 314
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	7 cut(s)	155, 200, 203, 223, 281, 363, 402
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	7 cut(s)	155, 200, 203, 223, 281, 363, 402
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	7 cut(s)	155, 200, 203, 223, 281, 363, 402
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	66, 199, 216
HapII	CCGG	2 cut(s)	275, 284
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	275, 284
HphI	GGTGA	3 cut(s)	43, 58, 443
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188III	TCNNGA	3 cut(s)	127, 193, 457
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	5 cut(s)	17, 59, 128, 254, 296
HpyAV	CCTTC	3 cut(s)	337, 391, 400
HpyCH4IV	ACGT	2 cut(s)	123, 312
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 401
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	123, 312
KflI	GGGWCCC	1 cut(s)	301
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	36, 189, 288
LmnI	GCTCC	2 cut(s)	88, 96
LpnPI	CCDG	6 cut(s)	171, 231, 258, 288, 297, 397
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	123, 349
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	123, 312
MaeIII	GTNAC	3 cut(s)	31, 46, 449
MalI	GATC	3 cut(s)	38, 191, 290
MboI	GATC	3 cut(s)	36, 189, 288
MboII	GAAGA	4 cut(s)	94, 142, 343, 346
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	153
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	1 cut(s)	463
MspI	CCGG	2 cut(s)	275, 284
MspR9I	CCNGG	2 cut(s)	246, 275
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	222, 401
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	3 cut(s)	36, 189, 288
NgoMIV	GCCGGC	1 cut(s)	283
NlaIV	GGNNCC	5 cut(s)	243, 273, 279, 302, 303
NmuCI	GTSAC	3 cut(s)	31, 46, 449
PdiI	GCCGGC	1 cut(s)	285
PkrI	GCNGC	7 cut(s)	156, 201, 204, 224, 282, 364, 403
Ple19I	CGATCG	2 cut(s)	39, 291
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	313
PpuMI	RGGWCCY	2 cut(s)	242, 301
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	2 cut(s)	242, 301
Psp6I	CCWGG	1 cut(s)	244
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	5 cut(s)	243, 273, 279, 302, 303
PspPI	GGNCC	5 cut(s)	64, 214, 242, 271, 301
PspPPI	RGGWCCY	2 cut(s)	242, 301
PvuI	CGATCG	2 cut(s)	39, 291
RsaI	GTAC	2 cut(s)	122, 230
RsaNI	GTAC	2 cut(s)	121, 229
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	7 cut(s)	155, 200, 203, 223, 281, 363, 402
Sau3AI	GATC	3 cut(s)	36, 189, 288
Sau96I	GGNCC	5 cut(s)	64, 214, 242, 271, 301
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	246, 275
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	123, 349
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	3 cut(s)	242, 271, 301
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	8 cut(s)	44, 200, 203, 222, 281, 362, 365, 401
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	244, 273
TaiI	ACGT	2 cut(s)	126, 315
TaqI	TCGA	5 cut(s)	12, 108, 126, 162, 291
TasI	AATT	1 cut(s)	429
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	6 cut(s)	202, 205, 225, 283, 365, 404
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TseFI	GTSAC	3 cut(s)	31, 46, 449
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	3 cut(s)	31, 46, 449
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	242, 271, 301
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.