Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

12470455 .. 12470829

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCCATACCCACAACGTCGACACAATCAAGTACATCGAGAAGAAGCTCGTCGACAAAGGCGTGCAGCCCCTTGAGCGCGAGAGACGGGACTGGGATCGGGCAGCCGCCGCCGAAGTCCGGCCACGGCGGCAAGTACAAGTGGGAGGGGCCTGATGACGTGGCGGAGAATGAGATGGACCCGGTCCCACCGGCTATTGATGAGGGGGACCCGAACTACGTGGACGAGGTGGCAGAGGAGAGGATTGTGAAGGGGGAGGATGCTGACGTGGCGGGGTTGGTGGTGGGGAAGGTTGAGGTGGCTAAGGCTACTGAGAACAGGGAGGGGGTTGCTAGGGTTGAGGTGGTTACTCCTCACAACCACCTCGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.07

Weight (kDa)

4.72

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	20, 53
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	107, 110, 129, 164, 272
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	2 cut(s)	34, 137
AfiI	CCNNNNNNNGG	1 cut(s)	119
AjiI	CACGTC	2 cut(s)	160, 268
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	121, 149
ApeKI	GCWGC	2 cut(s)	66, 103
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	149, 178, 184, 208
AsuC2I	CCSGG	1 cut(s)	182
AvaII	GGWCC	3 cut(s)	178, 184, 208
BbvI	GCAGC	2 cut(s)	78, 115
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	67, 104, 107, 110, 130
BlsI	GCNGC	5 cut(s)	68, 105, 108, 111, 131
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	3 cut(s)	178, 184, 208
BmgBI	CACGTC	2 cut(s)	160, 268
BmgT120I	GGNCC	4 cut(s)	149, 178, 184, 208
BmiI	GGNNCC	5 cut(s)	150, 180, 186, 209, 210
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	251, 342
BseXI	GCAGC	2 cut(s)	78, 115
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	123, 151
BsiSI	CCGG	3 cut(s)	120, 182, 191
BslFI	GGGAC	3 cut(s)	103, 170, 221
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	103, 170, 221
BsnI	GGCC	2 cut(s)	123, 151
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	5 cut(s)	107, 110, 129, 164, 272
BspANI	GGCC	2 cut(s)	123, 151
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	5 cut(s)	150, 180, 186, 209, 210
BspPI	GGATC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	3 cut(s)	303, 312, 372
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 109, 129, 269
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	78, 115
BsuRI	GGCC	2 cut(s)	123, 151
BtgI	CCRYGG	1 cut(s)	124
BtrI	CACGTC	2 cut(s)	160, 268
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	149, 178, 184, 208
Csp6I	GTAC	2 cut(s)	33, 136
CviJI	RGCY	8 cut(s)	48, 69, 106, 123, 151, 194, 302, 308
CviKI_1	RGCY	8 cut(s)	48, 69, 106, 123, 151, 194, 302, 308
CviQI	GTAC	2 cut(s)	33, 136
DdeI	CTNAG	3 cut(s)	303, 312, 372
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	179
Eco47I	GGWCC	3 cut(s)	178, 184, 208
EcoO109I	RGGNCCY	2 cut(s)	149, 208
Esp3I	CGTCTC	1 cut(s)	78
FaiI	YATR	1 cut(s)	8
FaqI	GGGAC	3 cut(s)	103, 170, 221
FauI	CCCGC	1 cut(s)	265
FblI	GTMKAC	2 cut(s)	20, 53
Fnu4HI	GCNGC	5 cut(s)	67, 104, 107, 110, 130
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	67, 104, 107, 110, 130
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	67, 104, 107, 110, 130
HaeIII	GGCC	2 cut(s)	123, 151
HapII	CCGG	3 cut(s)	120, 182, 191
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	2 cut(s)	21, 54
HindII	GTYRAC	2 cut(s)	21, 54
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	3 cut(s)	120, 182, 191
Hpy166II	GTNNAC	3 cut(s)	21, 54, 223
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	3 cut(s)	21, 54, 223
Hpy99I	CGWCG	2 cut(s)	22, 55
HpyAV	CCTTC	2 cut(s)	244, 283
HpyCH4IV	ACGT	4 cut(s)	17, 159, 219, 267
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 109, 129, 269
HpyF3I	CTNAG	3 cut(s)	303, 312, 372
HpySE526I	ACGT	4 cut(s)	17, 159, 219, 267
HspAI	GCGC	1 cut(s)	78
KflI	GGGWCCC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	96
LpnPI	CCDG	6 cut(s)	78, 133, 165, 195, 204, 304
Lsp1109I	GCAGC	2 cut(s)	78, 115
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	4 cut(s)	17, 159, 219, 267
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	54
MspI	CCGG	3 cut(s)	120, 182, 191
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	75, 109, 129, 269
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	96
NlaIV	GGNNCC	5 cut(s)	150, 180, 186, 209, 210
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	68, 105, 108, 111, 131
Ppu21I	YACGTR	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	5 cut(s)	150, 180, 186, 209, 210
PspPI	GGNCC	4 cut(s)	149, 178, 184, 208
PspPPI	RGGWCCY	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	34, 137
RsaNI	GTAC	2 cut(s)	33, 136
SalI	GTCGAC	2 cut(s)	19, 52
SatI	GCNGC	5 cut(s)	67, 104, 107, 110, 130
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	4 cut(s)	149, 178, 184, 208
ScrFI	CCNGG	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	3 cut(s)	178, 184, 208
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SsiI	CCGC	5 cut(s)	107, 110, 129, 164, 272
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	180
TaiI	ACGT	4 cut(s)	20, 162, 222, 270
TaqI	TCGA	4 cut(s)	20, 38, 53, 366
TatI	WGTACW	2 cut(s)	32, 135
TauI	GCSGC	3 cut(s)	109, 112, 132
TfiI	GAWTC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	66, 103
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	178, 184, 208
XmiI	GTMKAC	2 cut(s)	20, 53
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.