Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011126

Physical Location & Seq

Genomic Coordinates Forward (+)

17555632 .. 17560878

Gene Structure 5247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATTATACTTATCAGCTGGAGTACAGATTCCAAGGTAAAAAAGGCGTTCATCACCACTGTCACAGAATTCATAATCACTAAGAATGTAACACAACGTGGGAATCTTCTACAGCACCACATGGCAAAAACTCGAAGCTTCGCCTGTTCCAGCACCTTCCAGTGTTATCCGAACCCTGTTCCTCCATATATACACCCACTACGAAACGACTCCCATCTCACTCACTCACTCAAACAAAACAAGAAAACTCGCGAATCACAGTTAATCACGATGAAACCCATCGACGGCAAGAAGGACAAGGTGACAATCCGAGCGGTGAGCCACAACGAGGAGGGCCGGAAGATAGTGGAGAAGACGGAGCTCAAAACCCGCAACATCGACACCATCAAGTACGTGGAGAAGAAGCTCGTAGACATGGGATTGCAGGGCCGGGAGCGCCACCCCATCGATGGATTGGGAATCGGACAACCGCCGCCGAAGTCAGGCCACGGCGGGAAGTACACGTGGGAGGGACCCGGCGACATGGCGGAGAACGAGCTGGACCCAGTCCCGGCGGCCATAGATGAGAGGGATCCCAACTATTGCTCTAGATTATGCAACCTTTCTGTACGGAGATTTAAAGGATTGAAAATTTCGTATTGTAGCCATCGGAAATTAAGTAGAAAAGGGTGCCCGGTCGGACCACTTGGCCAACCAGAACACTCTTGCGATAAACTTAAAAAGGAAGAGGCTACCGGGCTTGTTTTCCCTTCAAGCAAATCAGACATCATCAACTTCAATTTTTTTGGGGAGGAAAATGACCTATCCCGCTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.68

Weight (kDa)

9.41

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10020 AT3G10020
fragaria_vesca	FvH4_6g17700 FvH4_6g17700
malus_domestica	MD12G1016000.v1.1 MD14G1014200.v1.1
prunus_persica	Prupe.7G091800_v2.0.a1 Prupe.7G119300_v2.0.a1
pyrus_communis	pycom12g01320
rosa_chinensis	RchiOBHm_Chr3g0471911
rosa_laevigata	RLG00000024119
rosa_multiflora	Rmu_co8333165.1_g000001 Rmu_sc0000090.1_g000009 Rmu_sc0000423.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409420
rosa_rugosa	Rorug03G0121100
rosa_samantha	Rh3AG172600 Rh3BG198000 Rh3CG188900 Rh3CG196400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	669
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	252
AciI	CCGC	8 cut(s)	314, 370, 470, 473, 492, 527, 554, 808
AclWI	GGATC	2 cut(s)	566, 579
AcoI	YGGCCR	2 cut(s)	555, 688
AcsI	RAATTY	2 cut(s)	68, 630
AcvI	CACGTG	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	4 cut(s)	25, 392, 500, 609
AfiI	CCNNNNNNNGG	5 cut(s)	284, 328, 449, 482, 550
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	3 cut(s)	628, 753, 778
AluBI	AGCT	5 cut(s)	18, 138, 361, 406, 538
AluI	AGCT	5 cut(s)	18, 138, 361, 406, 538
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	566, 579
AoxI	GGCC	5 cut(s)	334, 427, 484, 555, 688
ApoI	RAATTY	2 cut(s)	68, 630
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	5 cut(s)	334, 427, 512, 541, 680
AsuC2I	CCSGG	5 cut(s)	431, 516, 551, 674, 736
AsuHPI	GGTGA	3 cut(s)	46, 313, 328
AvaII	GGWCC	3 cut(s)	512, 541, 680
BaeGI	GKGCMC	1 cut(s)	674
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	6 cut(s)	222, 287, 392, 443, 452, 654
BceAI	ACGGC	2 cut(s)	301, 505
BcnI	CCSGG	5 cut(s)	431, 516, 551, 674, 736
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	2 cut(s)	473, 555
BlpI	GCTNAGC	1 cut(s)	811
BlsI	GCNGC	2 cut(s)	474, 556
Bme1390I	CCNGG	5 cut(s)	431, 516, 551, 674, 736
Bme18I	GGWCC	3 cut(s)	512, 541, 680
BmgT120I	GGNCC	5 cut(s)	334, 427, 512, 541, 680
BmiI	GGNNCC	5 cut(s)	513, 514, 543, 573, 671
BmrFI	CCNGG	5 cut(s)	431, 516, 551, 674, 736
BmrI	ACTGGG	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	811
BpuMI	CCSGG	5 cut(s)	431, 516, 551, 674, 736
Bsa29I	ATCGAT	1 cut(s)	447
BsaAI	YACGTR	2 cut(s)	394, 504
BsaJI	CCNNGG	2 cut(s)	33, 487
Bsc4I	CCNNNNNNNGG	5 cut(s)	284, 328, 449, 482, 550
Bse1I	ACTGG	2 cut(s)	160, 545
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	33, 487
BseLI	CCNNNNNNNGG	5 cut(s)	284, 328, 449, 482, 550
BseNI	ACTGG	2 cut(s)	160, 545
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	674
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	678
BshFI	GGCC	5 cut(s)	336, 429, 486, 557, 690
BshNI	GGYRCC	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	6 cut(s)	337, 430, 516, 551, 674, 735
BslFI	GGGAC	2 cut(s)	525, 533
BslI	CCNNNNNNNGG	5 cut(s)	284, 328, 449, 482, 550
BsmFI	GGGAC	2 cut(s)	525, 533
BsnI	GGCC	5 cut(s)	336, 429, 486, 557, 690
Bsp1286I	GDGCHC	2 cut(s)	363, 674
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	811
Bsp68I	TCGCGA	1 cut(s)	252
BspACI	CCGC	8 cut(s)	314, 370, 470, 473, 492, 527, 554, 808
BspANI	GGCC	5 cut(s)	336, 429, 486, 557, 690
BspDI	ATCGAT	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	5 cut(s)	513, 514, 543, 573, 671
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	1 cut(s)	669
BsrBI	CCGCTC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	160, 545
BssECI	CCNNGG	2 cut(s)	33, 487
BssMI	GATC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	61, 261
Bst6I	CTCTTC	1 cut(s)	720
BstBAI	YACGTR	2 cut(s)	394, 504
BstDEI	CTNAG	2 cut(s)	81, 811
BstDSI	CCRYGG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstMCI	CGRYCG	1 cut(s)	678
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstSCI	CCNGG	5 cut(s)	429, 514, 549, 672, 734
BstSFI	CTRYAG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	5 cut(s)	336, 429, 486, 557, 690
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	57, 167
BtuMI	TCGCGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	5 cut(s)	334, 427, 512, 541, 680
ClaI	ATCGAT	1 cut(s)	447
Csp6I	GTAC	4 cut(s)	24, 391, 499, 608
CviAII	CATG	4 cut(s)	121, 415, 523, 816
CviQI	GTAC	4 cut(s)	24, 391, 499, 608
DdeI	CTNAG	2 cut(s)	81, 811
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	619
DraIII	CACNNNGTG	1 cut(s)	98
EaeI	YGGCCR	2 cut(s)	555, 688
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	3 cut(s)	512, 541, 680
Eco53kI	GAGCTC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	124, 418, 526, 819
FaqI	GGGAC	2 cut(s)	525, 533
FatI	CATG	4 cut(s)	120, 414, 522, 815
FauI	CCCGC	3 cut(s)	377, 485, 815
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	473, 555
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	473, 555
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	473, 555
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	5 cut(s)	336, 429, 486, 557, 690
HapII	CCGG	6 cut(s)	337, 430, 516, 551, 674, 735
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	124, 418, 526, 819
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	5 cut(s)	29, 103, 209, 254, 459
HpaII	CCGG	6 cut(s)	337, 430, 516, 551, 674, 735
HphI	GGTGA	3 cut(s)	46, 313, 328
Hpy166II	GTNNAC	2 cut(s)	412, 501
Hpy188I	TCNGA	6 cut(s)	171, 311, 464, 651, 680, 763
Hpy188III	TCNNGA	3 cut(s)	251, 268, 588
Hpy8I	GTNNAC	2 cut(s)	412, 501
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	166, 286, 759
HpyCH4III	ACNGT	2 cut(s)	61, 261
HpyCH4IV	ACGT	3 cut(s)	97, 393, 503
HpyCH4V	TGCA	2 cut(s)	424, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpyF3I	CTNAG	2 cut(s)	81, 811
HpySE526I	ACGT	3 cut(s)	97, 393, 503
Hsp92II	CATG	4 cut(s)	124, 418, 526, 819
HspAI	GCGC	1 cut(s)	436
KflI	GGGWCCC	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	358, 433
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	3 cut(s)	97, 393, 503
MaeIII	GTNAC	3 cut(s)	61, 88, 301
MalI	GATC	1 cut(s)	573
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	1 cut(s)	571
MboII	GAAGA	5 cut(s)	98, 352, 364, 412, 737
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	2 cut(s)	363, 674
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	4 cut(s)	68, 630, 653, 778
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	7 cut(s)	192, 322, 325, 502, 561, 721, 784
Mox20I	TGGCCA	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	4 cut(s)	263, 618, 656, 717
Msp20I	TGGCCA	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	6 cut(s)	337, 430, 516, 551, 674, 735
MspR9I	CCNGG	5 cut(s)	431, 516, 551, 674, 736
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	435
NciI	CCSGG	5 cut(s)	431, 516, 551, 674, 736
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	4 cut(s)	124, 418, 526, 819
NlaIV	GGNNCC	5 cut(s)	513, 514, 543, 573, 671
NmuCI	GTSAC	2 cut(s)	61, 301
NruI	TCGCGA	1 cut(s)	252
PfeI	GAWTC	4 cut(s)	29, 103, 254, 459
PflFI	GACNNNGTC	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	474, 556
PleI	GAGTC	1 cut(s)	203
PmaCI	CACGTG	1 cut(s)	504
PmlI	CACGTG	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	2 cut(s)	394, 504
PpuMI	RGGWCCY	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	504
PspN4I	GGNNCC	5 cut(s)	513, 514, 543, 573, 671
PspPI	GGNCC	5 cut(s)	334, 427, 512, 541, 680
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	4 cut(s)	25, 392, 500, 609
RsaNI	GTAC	4 cut(s)	24, 391, 499, 608
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	263, 618, 656, 717
SatI	GCNGC	2 cut(s)	473, 555
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	5 cut(s)	334, 427, 512, 541, 680
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	5 cut(s)	431, 516, 551, 674, 736
SduI	GDGCHC	2 cut(s)	363, 674
SfcI	CTRYAG	1 cut(s)	110
SinI	GGWCC	3 cut(s)	512, 541, 680
Sse9I	AATT	4 cut(s)	68, 630, 653, 778
SsiI	CCGC	8 cut(s)	314, 370, 470, 473, 492, 527, 554, 808
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	5 cut(s)	429, 514, 549, 672, 734
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	61, 261
TaiI	ACGT	3 cut(s)	100, 396, 506
TaqI	TCGA	4 cut(s)	133, 282, 378, 447
TasI	AATT	4 cut(s)	68, 630, 653, 778
TatI	WGTACW	2 cut(s)	23, 498
TauI	GCSGC	2 cut(s)	475, 557
TfiI	GAWTC	4 cut(s)	29, 103, 254, 459
Tru1I	TTAA	4 cut(s)	263, 618, 656, 717
Tru9I	TTAA	4 cut(s)	263, 618, 656, 717
TscAI	CASTG	2 cut(s)	64, 167
TseFI	GTSAC	2 cut(s)	61, 301
Tsp45I	GTSAC	2 cut(s)	61, 301
TspDTI	ATGAA	3 cut(s)	40, 61, 287
TspGWI	ACGGA	2 cut(s)	371, 625
TspRI	CASTG	2 cut(s)	64, 167
Tth111I	GACNNNGTC	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	512, 541, 680
XapI	RAATTY	2 cut(s)	68, 630
XbaI	TCTAGA	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	3 cut(s)	391, 446, 451
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.