Rorug03G0121100

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000875
Physical Location & Seq
Reverse (-)
9742475 .. 9746836
4362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0121100.1

Sequence Viewer

Length: 1455 bp
ATGTTGCCTCAGAAGCAAGCAGAGGAGGCAATAGTCTCCAACTTTAGCGAGGGAGCAGATCATGAAGGAAAGGAATTGGGAGCAGAAGAGAATAAAGATGGAGAAAACGCCTCATTGTTTAGTGTCAAGAACTTTCTCTGGCATGGTGGCTCTGCTTGGGACGCCTGGTTCAGCTGTGCTTCCAATCAAGTGGCGCAAGTACTATTGACACTTCCATACTCATTCTCTCAGCTCGGACTTTTATCCGGTATCTTGCTTCAGCTGTTCTATGGGATCGTCGGAAGCTGGACGGCTTATCTAATCAGTGTGCTCTATATTGAGTTCCGGAGCAGGAAGGAGAAGGAGAATGTTAATTTCAAGAACCATGTTATCCAGTGGTTTGAAGTGCTTGATGGGTTACTTGGTCCTTACTGGAAAGCAGTGGGGCTTGCCTTCAACTGTACCTTCCTCCTATTTGGATCTGTCATTCAGCTCATTGCTTGTGCAAGCAACATATATTACATCAATGACAATTTGGACAAGAGGACTTGGACATATATCTTTGGAGCTTGCTGTGCCACTACAGTGTTCATACCTTCTTTCCATAACTATCGGATTTGGTCTTTCCTTGGACTTGCAATGACCACTTACACAGCCTGGTACATGACCATAGCAGCTGCTGTTCACGGACAGGTTGAAGGTGTTACACACTCGGCTCCCCAAAAGATGGTGCTGTATTTCACCGGCGCCACCAACATACTATACACCTTTGGTGGCCATGCTGTTACAGTGGAAATCATGCATGCCATGTGGAAGCCACAAAAATTCAAGTACATTTACTTGTTTGCCACACTCTATGTTTTCACATTGACAATTCCCTCGGCTTCGGTCGTTTACTGGGCCTTCGGCGATGAGCTTCTCAACCATTCCAACGCCTTCTCTCTCCTCCCCAAGAATGCGTGGCGTGACGCTGCTGTTATCCTCATGCTCATTCACCAGTTTATTACTTTTGGGTTTGCTTGCACACCATTGTACTTTGTGTGGGAGAAGGTGATCGGTATGCATGACACAAGAAGCATTTGCTTGAGGGCACTGGCTAGGCTTCCAGTTGTGATCCCAATTTGGTTCTTGGCTATAATCTTTCCGTTTTTCGGACCGATTAACTCTGCGGTTGGGGCTCTCTTGGTTAGTTTCACAGTCTACATCATCCCATCTTTGGCTCATATGCTCACATACAGAAAAGCATCTGCCAGACAGAATGCTGCGGAGAAGCCACCATTCTTTTTACCAAGTTGGACAGCCATGTTTGTGATCAACTCCTTCATAGTTGTGTGGGTTCTGGTAATCGGGTTCGGGTTCGGTGGATGGGCCAGCATGACCAACTTTGTGAGGCAAGTGGACACATTTGGGCTGTTTGCAAAGTGCTATCAATGCAAGCCCCCAAAGCCAGTAGTAGCACCAGCCCCACATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

484

Amino Acids

54.45

Weight (kDa)

8.45

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 48 - 441 5e-88 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 725
AccB7I CCANNNNNTGG 1 cut(s) 706
AccI GTMKAC 1 cut(s) 1179
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 2 cut(s) 1148, 1244
AclWI GGATC 3 cut(s) 281, 466, 1087
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 803
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 2 cut(s) 162, 726
AfaI GTAC 5 cut(s) 201, 442, 641, 812, 1013
AfiI CCNNNNNNNGG 3 cut(s) 706, 1130, 1195
AgsI TTSAA 5 cut(s) 358, 383, 436, 677, 808
AjnI CCWGG 2 cut(s) 164, 635
AleI CACNNNNGTG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 8 cut(s) 174, 232, 262, 285, 472, 548, 656, 895
AluI AGCT 8 cut(s) 174, 232, 262, 285, 472, 548, 656, 895
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 3 cut(s) 281, 466, 1087
AlwNI CAGNNNCTG 1 cut(s) 659
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 3 cut(s) 754, 879, 1347
ApeKI GCWGC 4 cut(s) 653, 656, 950, 1241
ApoI RAATTY 1 cut(s) 803
AspLEI GCGC 2 cut(s) 196, 728
AspS9I GGNCC 4 cut(s) 404, 879, 1133, 1347
AsuHPI GGTGA 3 cut(s) 712, 965, 1042
AvaII GGWCC 2 cut(s) 404, 1133
BaeGI GKGCMC 1 cut(s) 1072
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 1159
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 643, 665, 937, 1228
BccI CCATC 5 cut(s) 92, 386, 700, 1198, 1338
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 2 cut(s) 166, 637
BclI TGATCA 1 cut(s) 1290
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 1077
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 729
BisI GCNGC 4 cut(s) 654, 657, 951, 1242
BlsI GCNGC 4 cut(s) 655, 658, 952, 1243
BmcAI AGTACT 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 166, 637
Bme18I GGWCC 2 cut(s) 404, 1133
BmgT120I GGNCC 4 cut(s) 404, 879, 1133, 1347
BmiI GGNNCC 2 cut(s) 696, 727
BmrFI CCNGG 2 cut(s) 166, 637
BmrI ACTGGG 1 cut(s) 886
BmsI GCATC 1 cut(s) 1232
BmuI ACTGGG 1 cut(s) 886
BpuEI CTTGAG 1 cut(s) 1084
BsaHI GRCGYC 2 cut(s) 162, 726
BsaJI CCNNGG 2 cut(s) 607, 858
BsaWI WCCGGW 2 cut(s) 245, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 706, 1130, 1195
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 7 cut(s) 373, 416, 881, 976, 1077, 1085, 1427
Bse3DI GCAATG 2 cut(s) 474, 624
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 2 cut(s) 166, 637
BseDI CCNNGG 2 cut(s) 607, 858
BseGI GGATG 2 cut(s) 1185, 1349
BseLI CCNNNNNNNGG 3 cut(s) 706, 1130, 1195
BseMI GCAATG 2 cut(s) 474, 624
BseMII CTCAG 2 cut(s) 23, 242
BseNI ACTGG 7 cut(s) 373, 416, 881, 976, 1077, 1085, 1427
BseRI GAGGAG 2 cut(s) 38, 914
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 4 cut(s) 643, 665, 937, 1228
Bsh1285I CGRYCG 1 cut(s) 870
BshFI GGCC 3 cut(s) 756, 881, 1349
BshNI GGYRCC 1 cut(s) 725
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 3 cut(s) 246, 325, 723
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 706, 1130, 1195
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 940, 1243
BsnI GGCC 3 cut(s) 756, 881, 1349
Bsp1286I GDGCHC 3 cut(s) 312, 1072, 1159
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
BspACI CCGC 2 cut(s) 1148, 1244
BspANI GGCC 3 cut(s) 756, 881, 1349
BspCNI CTCAG 2 cut(s) 22, 241
BspEI TCCGGA 1 cut(s) 324
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 696, 727
BspPI GGATC 3 cut(s) 281, 466, 1087
BspT107I GGYRCC 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 474, 624
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 7 cut(s) 373, 416, 881, 976, 1077, 1085, 1427
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 607, 858
BssMI GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
BssNI GRCGYC 2 cut(s) 162, 726
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 2 cut(s) 166, 637
Bst4CI ACNGT 4 cut(s) 440, 565, 769, 1177
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 2 cut(s) 162, 726
BstC8I GCNNGC 8 cut(s) 18, 429, 487, 550, 783, 1000, 1351, 1415
BstDEI CTNAG 2 cut(s) 9, 228
BstF5I GGATG 2 cut(s) 1185, 1349
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 2 cut(s) 196, 728
BstKTI GATC 6 cut(s) 61, 276, 461, 1035, 1095, 1293
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
BstMCI CGRYCG 1 cut(s) 870
BstMWI GCNNNNNNNGC 7 cut(s) 13, 26, 161, 554, 1154, 1410, 1423
BstNI CCWGG 2 cut(s) 166, 637
BstNSI RCATGY 1 cut(s) 785
BstSCI CCNGG 2 cut(s) 164, 635
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 1072
BstV1I GCAGC 4 cut(s) 643, 665, 937, 1228
BstX2I RGATCY 1 cut(s) 458
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 3 cut(s) 756, 881, 1349
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 2 cut(s) 1185, 1349
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 6 cut(s) 310, 380, 426, 570, 774, 1070
Cac8I GCNNGC 8 cut(s) 18, 429, 487, 550, 783, 1000, 1351, 1415
CaiI CAGNNNCTG 1 cut(s) 659
CciI TCATGA 1 cut(s) 61
CfoI GCGC 2 cut(s) 196, 728
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 4 cut(s) 404, 879, 1133, 1347
CpoI CGGWCCG 1 cut(s) 1133
CseI GACGC 2 cut(s) 170, 956
Csp6I GTAC 5 cut(s) 200, 441, 640, 811, 1012
CspI CGGWCCG 1 cut(s) 1133
CviQI GTAC 5 cut(s) 200, 441, 640, 811, 1012
DdeI CTNAG 2 cut(s) 9, 228
DinI GGCGCC 1 cut(s) 727
DpnI GATC 6 cut(s) 60, 275, 460, 1034, 1094, 1292
DpnII GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 1159
Eco47I GGWCC 2 cut(s) 404, 1133
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 164, 635
EcoT14I CCWWGG 1 cut(s) 607
EcoT22I ATGCAT 2 cut(s) 783, 1044
EcoT38I GRGCYC 1 cut(s) 1159
EgeI GGCGCC 1 cut(s) 727
EheI GGCGCC 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 607
FaqI GGGAC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 1203
FbaI TGATCA 1 cut(s) 1290
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 4 cut(s) 654, 657, 951, 1242
FokI GGATG 2 cut(s) 1172, 1356
FriOI GRGCYC 1 cut(s) 1159
Fsp4HI GCNGC 4 cut(s) 654, 657, 951, 1242
FspBI CTAG 1 cut(s) 1077
GlaI GCGC 2 cut(s) 195, 727
GluI GCNGC 4 cut(s) 654, 657, 951, 1242
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 3 cut(s) 756, 881, 1349
HapII CCGG 3 cut(s) 246, 325, 723
HgaI GACGC 2 cut(s) 170, 956
HhaI GCGC 2 cut(s) 196, 728
Hin1I GRCGYC 2 cut(s) 162, 726
Hin6I GCGC 2 cut(s) 194, 726
HinP1I GCGC 2 cut(s) 194, 726
HpaII CCGG 3 cut(s) 246, 325, 723
HphI GGTGA 3 cut(s) 712, 965, 1042
Hpy166II GTNNAC 4 cut(s) 664, 874, 1180, 1378
Hpy188I TCNGA 5 cut(s) 12, 236, 281, 594, 1133
Hpy188III TCNNGA 4 cut(s) 62, 127, 325, 358
Hpy8I GTNNAC 4 cut(s) 664, 874, 1180, 1378
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 4 cut(s) 440, 565, 769, 1177
HpyCH4V TGCA 7 cut(s) 485, 617, 781, 1002, 1042, 1397, 1413
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 26, 161, 554, 1154, 1410, 1423
HpyF3I CTNAG 2 cut(s) 9, 228
Hsp92I GRCGYC 2 cut(s) 162, 726
HspAI GCGC 2 cut(s) 194, 726
KasI GGCGCC 1 cut(s) 725
Kpn2I TCCGGA 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 1290
Kzo9I GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
LmnI GCTCC 5 cut(s) 53, 80, 327, 545, 700
Lsp1109I GCAGC 4 cut(s) 643, 665, 937, 1228
LweI GCATC 1 cut(s) 1232
MaeI CTAG 1 cut(s) 1077
MaeIII GTNAC 4 cut(s) 396, 682, 763, 944
MalI GATC 6 cut(s) 60, 275, 460, 1034, 1094, 1292
MboI GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 3 cut(s) 312, 1072, 1159
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 6 cut(s) 74, 352, 511, 803, 852, 1098
MluNI TGGCCA 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 726
MmeI TCCRAC 4 cut(s) 63, 259, 933, 1253
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 2 cut(s) 783, 1044
MroI TCCGGA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 756
MseI TTAA 2 cut(s) 351, 1140
MslI CAYNNNNRTG 3 cut(s) 563, 1286, 1307
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 3 cut(s) 174, 262, 656
MspI CCGG 3 cut(s) 246, 325, 723
MspR9I CCNGG 2 cut(s) 166, 637
Mva1269I GAATGC 2 cut(s) 940, 1243
MvaI CCWGG 2 cut(s) 166, 637
MwoI GCNNNNNNNGC 7 cut(s) 13, 26, 161, 554, 1154, 1410, 1423
NarI GGCGCC 1 cut(s) 726
NdeI CATATG 1 cut(s) 1203
NdeII GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
NlaIV GGNNCC 2 cut(s) 696, 727
NmeAIII GCCGAG 2 cut(s) 671, 839
NmuCI GTSAC 1 cut(s) 944
NsiI ATGCAT 2 cut(s) 783, 1044
NspI RCATGY 1 cut(s) 785
OliI CACNNNNGTG 1 cut(s) 563
PaeI GCATGC 1 cut(s) 785
PagI TCATGA 1 cut(s) 61
PctI GAATGC 2 cut(s) 940, 1243
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 4 cut(s) 655, 658, 952, 1243
PluTI GGCGCC 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 164, 635
PspGI CCWGG 2 cut(s) 164, 635
PspN4I GGNNCC 2 cut(s) 696, 727
PspPI GGNCC 4 cut(s) 404, 879, 1133, 1347
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 458
PvuII CAGCTG 3 cut(s) 174, 262, 656
RsaI GTAC 5 cut(s) 201, 442, 641, 812, 1013
RsaNI GTAC 5 cut(s) 200, 441, 640, 811, 1012
RseI CAYNNNNRTG 3 cut(s) 563, 1286, 1307
Rsr2I CGGWCCG 1 cut(s) 1133
RsrII CGGWCCG 1 cut(s) 1133
SaqAI TTAA 2 cut(s) 351, 1140
SatI GCNGC 4 cut(s) 654, 657, 951, 1242
Sau3AI GATC 6 cut(s) 58, 273, 458, 1032, 1092, 1290
Sau96I GGNCC 4 cut(s) 404, 879, 1133, 1347
ScaI AGTACT 1 cut(s) 201
ScrFI CCNGG 2 cut(s) 166, 637
SduI GDGCHC 3 cut(s) 312, 1072, 1159
SfaNI GCATC 1 cut(s) 1232
SfcI CTRYAG 1 cut(s) 561
SfoI GGCGCC 1 cut(s) 727
SgrAI CRCCGGYG 1 cut(s) 722
SinI GGWCC 2 cut(s) 404, 1133
SmiMI CAYNNNNRTG 3 cut(s) 563, 1286, 1307
SmlI CTYRAG 1 cut(s) 1063
SmoI CTYRAG 1 cut(s) 1063
SphI GCATGC 1 cut(s) 785
Sse9I AATT 6 cut(s) 74, 352, 511, 803, 852, 1098
SsiI CCGC 2 cut(s) 1148, 1244
SspDI GGCGCC 1 cut(s) 725
SspMI CTAG 1 cut(s) 1077
StyD4I CCNGG 2 cut(s) 164, 635
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 4 cut(s) 440, 565, 769, 1177
TaqII GACCGA 2 cut(s) 856, 1150
TasI AATT 6 cut(s) 74, 352, 511, 803, 852, 1098
TatI WGTACW 3 cut(s) 199, 810, 1011
Tru1I TTAA 2 cut(s) 351, 1140
Tru9I TTAA 2 cut(s) 351, 1140
TscAI CASTG 6 cut(s) 310, 380, 426, 570, 774, 1077
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 4 cut(s) 653, 656, 950, 1241
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 3 cut(s) 78, 559, 1291
TspGWI ACGGA 2 cut(s) 681, 1113
TspRI CASTG 6 cut(s) 310, 380, 426, 570, 774, 1077
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 404, 1133
XapI RAATTY 1 cut(s) 803
XceI RCATGY 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 1179
XspI CTAG 1 cut(s) 1077
ZrmI AGTACT 1 cut(s) 201
Zsp2I ATGCAT 2 cut(s) 783, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.