RLG00000024089

NLI interacting factor-like phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
31666072 .. 31670600
4529 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024089

Sequence Viewer

Length: 1338 bp
ATGCGTTTGGAAAATGACACTGAAAGAATAGAGAGAATGACAGCAAAAGAGAGCACTGGTCATAGGTCTTCAAGATCAAGGCATGGTTCTTCTCCATCAGATCGACACCGTAGCAGTAGACATAGATATCACTCACCTCACCATGCTGGTGATACAAGAGATACAGAGAAAGTAATTGAAGGCTGTCAAAGAAATTATAGGAGAGAGAACGATAGAAGTATGAATAGGGAAAAGCATTCAGATAGGGAATATGAGACTGAAAGAATGGAGATAAGGACAGCAAAGGACAGTTCTGGTCATAGGTCTTCAAGATCAAGACACGGGCTATCTACTTCTCCATTGAATGGACACCACAAGAACAGACACGGAACTCTTTCATCTCAACAGGTTGCAGATATCAGAGCTCGCGATGAGGTGCCTGAGTCGAGGGAGGCTAAGGATGGGATTGAAAAGAATGATTCAGTAGCTATGATTAGCACTGCTGAGGAAGTCTTGGAAGCACAGAAAAAGAAAAATCCTTCGTTTGAGTTATCTGGAAAGCTTGCTATGGAAACCTATAGATTCAGAGGAGATAGCTATAAGAAGAATCTTCTTTCGAGTGGTAACTATGATGGTGATGAAGACTATGATAATGAAAGAACACGAGGCATATGTAGGCTGAATCTAGCACCAAGAAAAAAAAAGCTTCTTGTGTTTGATCTCAATGGATTACTAGTCTACAGAGTTTTCTGTTTCAACAAGAGTGGTATTCCAAGGGATCGTACTCCTGATGGGAAATGTGGAAACCATCTAGTTTTTAAAAGAGCTTTTGCTGAGGAGTTTATGCGATTCTGCCTTGAAAGATTTGAAGTTGGAATATGGACTTCTGCACTTGAGAAAAATGTTGATGGTGTCTTGGATTGTGTGATGGAAAAGCTGAGAAGCAGACTTATATTTGTGTGGGATCAGCATCAATGTACTGATTCTGGGTTCAAGTCCCTGGAAACGAAAATGAAGCCTCTGTTTTTCAAAGAACTGAAGAGAGTATGGGATCATTTTGAGGGAAAGTTTTCTGCATCTGATACTCTATTGATTGATGATCAGCCTTACAAGGCCCTTCTCAATCCTCCTTACACAGGGATTTTCCTGGATCCCTACATTCCTGACAATGGTACTGACAATGCTTTAGATCCAAAGAAAGAGTTGGGGAGGTATTTGGCCGGCCTTGCATTTGCAGATGATGTTCAGCTTTACGTGAAGGACAATCCCTTTGGCCAGCCTGCAATTTCATCTGAACATCCTGATTGGAATTTTTACTCTCATGTTCTCCAAAAACTTGGAAAGGATCTACTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

51.4

Weight (kDa)

8.6

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 228 - 409 2.1e-20 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AccB7I CCANNNNNTGG 1 cut(s) 344
AccI GTMKAC 2 cut(s) 118, 717
AccII CGCG 1 cut(s) 408
AclWI GGATC 7 cut(s) 765, 951, 1038, 1124, 1137, 1163, 1332
AcoI YGGCCR 2 cut(s) 1197, 1252
AcsI RAATTY 1 cut(s) 1288
AcuI CTGAAG 1 cut(s) 1037
AfaI GTAC 3 cut(s) 763, 958, 1153
AfiI CCNNNNNNNGG 3 cut(s) 344, 1115, 1148
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 2 cut(s) 978, 1125
AluBI AGCT 8 cut(s) 404, 467, 541, 576, 685, 806, 916, 1228
AluI AGCT 8 cut(s) 404, 467, 541, 576, 685, 806, 916, 1228
Alw21I GWGCWC 2 cut(s) 56, 406
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 7 cut(s) 765, 951, 1038, 1124, 1137, 1163, 1332
AoxI GGCC 4 cut(s) 1092, 1197, 1201, 1252
ApoI RAATTY 1 cut(s) 1288
ArsI GACNNNNNNTTYG 2 cut(s) 1232, 1264
Asp700I GAANNNNTTC 2 cut(s) 373, 1048
AspS9I GGNCC 1 cut(s) 1093
AsuHPI GGTGA 4 cut(s) 126, 131, 161, 626
BalI TGGCCA 1 cut(s) 1254
BamHI GGATCC 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 406
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 3 cut(s) 60, 297, 627
Bbv12I GWGCWC 2 cut(s) 56, 406
BbvCI CCTCAGC 2 cut(s) 483, 813
BccI CCATC 7 cut(s) 103, 434, 605, 764, 795, 881, 901
BciT130I CCWGG 2 cut(s) 980, 1127
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 248
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 3 cut(s) 665, 713, 791
BfmI CTRYAG 2 cut(s) 556, 718
Bme1390I CCNGG 2 cut(s) 980, 1127
BmgT120I GGNCC 1 cut(s) 1093
BmiI GGNNCC 2 cut(s) 417, 1131
BmrFI CCNGG 2 cut(s) 980, 1127
BmsI GCATC 2 cut(s) 958, 1064
BpiI GAAGAC 3 cut(s) 60, 297, 627
Bpu10I CCTNAGC 3 cut(s) 435, 483, 813
BpuEI CTTGAG 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 1234
BsaBI GATNNNNATC 1 cut(s) 948
BsaJI CCNNGG 2 cut(s) 752, 978
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 1115, 1148
Bse118I RCCGGY 1 cut(s) 1199
Bse1I ACTGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 2 cut(s) 980, 1127
BseDI CCNNGG 2 cut(s) 752, 978
BseGI GGATG 2 cut(s) 445, 1276
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 3 cut(s) 344, 1115, 1148
BseMII CTCAG 4 cut(s) 411, 474, 804, 908
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 582, 830
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 1094, 1199, 1203, 1254
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 56, 406
BsiSI CCGG 1 cut(s) 1200
BslFI GGGAC 1 cut(s) 961
BslI CCNNNNNNNGG 3 cut(s) 344, 1115, 1148
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 961
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 4 cut(s) 1094, 1199, 1203, 1254
Bsp1286I GDGCHC 2 cut(s) 56, 406
Bsp68I TCGCGA 1 cut(s) 408
BspANI GGCC 4 cut(s) 1094, 1199, 1203, 1254
BspCNI CTCAG 4 cut(s) 412, 475, 805, 909
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 417, 1131
BspPI GGATC 7 cut(s) 765, 951, 1038, 1124, 1137, 1163, 1332
BspT107I GGYRCC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 1199
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 1199
BssECI CCNNGG 2 cut(s) 752, 978
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 980, 1127
Bst4CI ACNGT 2 cut(s) 110, 290
Bst6I CTCTTC 1 cut(s) 1013
BstBAI YACGTR 1 cut(s) 1234
BstC8I GCNNGC 5 cut(s) 406, 543, 1201, 1256, 1260
BstDEI CTNAG 5 cut(s) 420, 435, 483, 813, 917
BstENI CCTNNNNNAGG 1 cut(s) 1113
BstF5I GGATG 2 cut(s) 445, 1276
BstFNI CGCG 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 1205
BstNI CCWGG 2 cut(s) 980, 1127
BstSCI CCNGG 2 cut(s) 978, 1125
BstSFI CTRYAG 2 cut(s) 556, 718
BstUI CGCG 1 cut(s) 408
BstV2I GAAGAC 3 cut(s) 60, 297, 627
BstX2I RGATCY 3 cut(s) 1129, 1168, 1324
BstXI CCANNNNNNTGG 1 cut(s) 1316
BstYI RGATCY 3 cut(s) 1129, 1168, 1324
BsuRI GGCC 4 cut(s) 1094, 1199, 1203, 1254
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 445, 1276
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 3 cut(s) 18, 54, 477
BtuMI TCGCGA 1 cut(s) 408
Cac8I GCNNGC 5 cut(s) 406, 543, 1201, 1256, 1260
Cfr10I RCCGGY 1 cut(s) 1199
Cfr13I GGNCC 1 cut(s) 1093
Csp6I GTAC 3 cut(s) 762, 957, 1152
CspCI CAANNNNNGTGG 2 cut(s) 724, 759
CviAII CATG 3 cut(s) 83, 143, 1301
CviQI GTAC 3 cut(s) 762, 957, 1152
DdeI CTNAG 5 cut(s) 420, 435, 483, 813, 917
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 2 cut(s) 1197, 1252
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
Ecl136II GAGCTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 406
Eco32I GATATC 2 cut(s) 128, 397
Eco53kI GAGCTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 1037
EcoICRI GAGCTC 1 cut(s) 404
EcoNI CCTNNNNNAGG 1 cut(s) 1113
EcoO109I RGGNCCY 1 cut(s) 1093
EcoRII CCWGG 2 cut(s) 978, 1125
EcoRV GATATC 2 cut(s) 128, 397
EcoT14I CCWWGG 1 cut(s) 752
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 752
FaeI CATG 3 cut(s) 86, 146, 1304
FaqI GGGAC 1 cut(s) 961
FatI CATG 3 cut(s) 82, 142, 1300
FauNDI CATATG 1 cut(s) 650
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 2 cut(s) 118, 717
FokI GGATG 2 cut(s) 452, 1263
FriOI GRGCYC 1 cut(s) 406
FseI GGCCGGCC 1 cut(s) 1203
FspBI CTAG 3 cut(s) 665, 713, 791
HaeIII GGCC 4 cut(s) 1094, 1199, 1203, 1254
HapII CCGG 1 cut(s) 1200
Hin1II CATG 3 cut(s) 86, 146, 1304
HindIII AAGCTT 2 cut(s) 539, 683
HinfI GANTC 7 cut(s) 422, 458, 561, 586, 661, 828, 962
HpaII CCGG 1 cut(s) 1200
HphI GGTGA 4 cut(s) 126, 131, 161, 626
Hpy166II GTNNAC 2 cut(s) 119, 718
Hpy188I TCNGA 6 cut(s) 100, 241, 401, 566, 1060, 1273
Hpy188III TCNNGA 8 cut(s) 72, 309, 315, 407, 534, 767, 1142, 1280
Hpy8I GTNNAC 2 cut(s) 119, 718
HpyAV CCTTC 4 cut(s) 173, 528, 1106, 1231
HpyCH4III ACNGT 2 cut(s) 110, 290
HpyCH4IV ACGT 1 cut(s) 1233
HpyCH4V TGCA 6 cut(s) 392, 869, 1055, 1208, 1214, 1262
HpyF10VI GCNNNNNNNGC 1 cut(s) 1205
HpyF3I CTNAG 5 cut(s) 420, 435, 483, 813, 917
HpySE526I ACGT 1 cut(s) 1233
Hsp92II CATG 3 cut(s) 86, 146, 1304
KroI GCCGGC 1 cut(s) 1199
KroNI GCCGGC 1 cut(s) 1201
Ksp22I TGATCA 1 cut(s) 1078
LweI GCATC 2 cut(s) 958, 1064
MaeI CTAG 3 cut(s) 665, 713, 791
MaeII ACGT 1 cut(s) 1233
MaeIII GTNAC 1 cut(s) 602
MboII GAAGA 7 cut(s) 60, 81, 297, 581, 595, 632, 1030
MflI RGATCY 3 cut(s) 1129, 1168, 1324
MhlI GDGCHC 2 cut(s) 56, 406
MlsI TGGCCA 1 cut(s) 1254
MluCI AATT 4 cut(s) 174, 193, 1263, 1288
MluNI TGGCCA 1 cut(s) 1254
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 832
Mox20I TGGCCA 1 cut(s) 1254
MroNI GCCGGC 1 cut(s) 1199
MroXI GAANNNNTTC 2 cut(s) 373, 1048
MscI TGGCCA 1 cut(s) 1254
MseI TTAA 2 cut(s) 798, 1336
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 1254
MspI CCGG 1 cut(s) 1200
MspR9I CCNGG 2 cut(s) 980, 1127
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 2 cut(s) 980, 1127
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 1205
NaeI GCCGGC 1 cut(s) 1201
NdeI CATATG 1 cut(s) 650
NgoMIV GCCGGC 1 cut(s) 1199
NlaIII CATG 3 cut(s) 86, 146, 1304
NlaIV GGNNCC 2 cut(s) 417, 1131
NruI TCGCGA 1 cut(s) 408
PctI GAATGC 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 1201
PdmI GAANNNNTTC 2 cut(s) 373, 1048
PfeI GAWTC 6 cut(s) 458, 561, 586, 661, 828, 962
PflMI CCANNNNNTGG 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 1125
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 1234
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 2 cut(s) 978, 1125
PspGI CCWGG 2 cut(s) 978, 1125
PspN4I GGNNCC 2 cut(s) 417, 1131
PspPI GGNCC 1 cut(s) 1093
PsuI RGATCY 3 cut(s) 1129, 1168, 1324
RigI GGCCGGCC 1 cut(s) 1203
RruI TCGCGA 1 cut(s) 408
RsaI GTAC 3 cut(s) 763, 958, 1153
RsaNI GTAC 3 cut(s) 762, 957, 1152
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 406
SaqAI TTAA 2 cut(s) 798, 1336
Sau96I GGNCC 1 cut(s) 1093
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 980, 1127
SduI GDGCHC 2 cut(s) 56, 406
SfaNI GCATC 2 cut(s) 958, 1064
SfcI CTRYAG 2 cut(s) 556, 718
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 4 cut(s) 174, 193, 1263, 1288
SspMI CTAG 3 cut(s) 665, 713, 791
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 978, 1125
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 2 cut(s) 110, 290
TaiI ACGT 1 cut(s) 1236
TaqI TCGA 3 cut(s) 103, 425, 596
TasI AATT 4 cut(s) 174, 193, 1263, 1288
TatI WGTACW 1 cut(s) 956
TfiI GAWTC 6 cut(s) 458, 561, 586, 661, 828, 962
Tru1I TTAA 2 cut(s) 798, 1336
Tru9I TTAA 2 cut(s) 798, 1336
TscAI CASTG 3 cut(s) 25, 61, 484
TspDTI ATGAA 6 cut(s) 236, 366, 633, 648, 1007, 1257
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 3 cut(s) 25, 61, 484
Van91I CCANNNNNTGG 1 cut(s) 344
XagI CCTNNNNNAGG 1 cut(s) 1113
XapI RAATTY 1 cut(s) 1288
XmiI GTMKAC 2 cut(s) 118, 717
XmnI GAANNNNTTC 2 cut(s) 373, 1048
XspI CTAG 3 cut(s) 665, 713, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.