AT2G36550

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000875
Physical Location & Seq
Forward (+)
15327479 .. 15328802
1324 bp
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UTR
Exon/CDS
Intron
AT2G36550.1

Sequence Viewer

Length: 426 bp
ATGCTCCCAAGAACCGTTCTCCTGATGCTTCATGTGGACCAAATCTTGGATCAAGAAAAGTGTACGGACAGTGGATATAAAACGCTTGAGAACAGTGACAAGCCTCTGTTCTTTAAGGATCTCTCTAAAGTGTTTCAGTGCTTCAAAGGTTTCTCTGCTTCAAACACCATATTCATTGAAGAAGAACCTTACAAAGCTCTTCTTAATCCTGACAATACAGGTGTGTTCCCGTTGAGTTATGACCCGTCAGACACAAAAGATAATTTACTTGATCCAGAAGGAGAGTTCTGTTCTTACTTGGATGGTTTGGCAAATTCATCTGATGTTCAGGCTTACATAAAGGAGCATCCTTTTGGACAGCCCATGATCGATTCTTCTCATCTTGATTGGTCTTACTACCGCAGAGTGTCGAATATTGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

4.54

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 15 - 110 5.3e-06 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 1 cut(s) 400
AclWI GGATC 3 cut(s) 57, 126, 266
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 145, 162, 179
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 3 cut(s) 57, 126, 266
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BccI CCATC 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmsI GCATC 2 cut(s) 15, 355
BpuEI CTTGAG 1 cut(s) 107
Bsa29I ATCGAT 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseCI ATCGAT 1 cut(s) 369
BseGI GGATG 2 cut(s) 307, 346
BseLI CCNNNNNNNGG 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp143I GATC 4 cut(s) 49, 118, 271, 366
BspACI CCGC 1 cut(s) 400
BspDI ATCGAT 1 cut(s) 369
BspPI GGATC 3 cut(s) 57, 126, 266
BspQI GCTCTTC 1 cut(s) 204
BssMI GATC 4 cut(s) 49, 118, 271, 366
Bst4CI ACNGT 3 cut(s) 16, 71, 95
Bst6I CTCTTC 1 cut(s) 204
BstF5I GGATG 2 cut(s) 307, 346
BstKTI GATC 4 cut(s) 52, 121, 274, 369
BstMBI GATC 4 cut(s) 49, 118, 271, 366
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 2 cut(s) 307, 346
BtsIMutI CAGTG 3 cut(s) 76, 100, 143
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 369
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 32, 364
CviJI RGCY 4 cut(s) 103, 197, 332, 361
CviKI_1 RGCY 4 cut(s) 103, 197, 332, 361
CviQI GTAC 1 cut(s) 63
DpnI GATC 4 cut(s) 51, 120, 273, 368
DpnII GATC 4 cut(s) 49, 118, 271, 366
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 37
FaeI CATG 2 cut(s) 35, 367
FaiI YATR 6 cut(s) 33, 78, 170, 240, 338, 365
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 2 cut(s) 31, 363
FokI GGATG 2 cut(s) 314, 333
Hin1II CATG 2 cut(s) 35, 367
HinfI GANTC 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 37, 63
Hpy188I TCNGA 2 cut(s) 250, 322
Hpy188III TCNNGA 5 cut(s) 22, 53, 209, 275, 383
Hpy8I GTNNAC 2 cut(s) 37, 63
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 16, 71, 95
Hsp92II CATG 2 cut(s) 35, 367
Kzo9I GATC 4 cut(s) 49, 118, 271, 366
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 9, 343
LpnPI CCDG 5 cut(s) 35, 204, 222, 288, 314
LweI GCATC 2 cut(s) 15, 355
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 51, 120, 273, 368
MboI GATC 4 cut(s) 49, 118, 271, 366
MboII GAAGA 4 cut(s) 191, 191, 194, 366
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 262, 313
MnlI CCTC 1 cut(s) 114
MseI TTAA 3 cut(s) 114, 204, 424
NdeII GATC 4 cut(s) 49, 118, 271, 366
NlaIII CATG 2 cut(s) 35, 367
NmuCI GTSAC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 114, 204, 424
Sau3AI GATC 4 cut(s) 49, 118, 271, 366
Sau96I GGNCC 1 cut(s) 37
SetI ASST 4 cut(s) 151, 190, 199, 223
SfaNI GCATC 2 cut(s) 15, 355
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 262, 313
SsiI CCGC 1 cut(s) 400
SspI AATATT 1 cut(s) 415
TaaI ACNGT 3 cut(s) 16, 71, 95
TaqI TCGA 2 cut(s) 369, 410
TasI AATT 2 cut(s) 262, 313
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 114, 204, 424
Tru9I TTAA 3 cut(s) 114, 204, 424
TscAI CASTG 3 cut(s) 76, 100, 143
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 20, 163, 306
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 3 cut(s) 76, 100, 143
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.