Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Forward (+)

11851167 .. 11851622

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18041.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGGAAATACTCTTCTCTGAACACCAAGGCTCTGCTAAACCCGGCTCACACAGCCATCTTTCCTGATGAATACAAGGTTGACCAAGTTGATGATAAGGCTTTAGTGAGCAAAGCGTCATTAGGTCCTAATGGGGAGTTGAGGCTTTACTTGGAGGGACTTGCAGATGCTGATGATGTTACTTCTTATGTTAAAGAAAATCCATTTGGACAGCCAGCAATATCAACTACTCACTCTGATTGGGAGTTTTATTTAAAGATCATCAATGCTATTGAGCTTGAGACATTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

98

Amino Acids

10.78

Weight (kDa)

4.69

Isoelectric Point (pI)

14.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	125
BccI	CCATC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	105
CviJI	RGCY	7 cut(s)	32, 47, 56, 101, 145, 214, 277
CviKI_1	RGCY	7 cut(s)	32, 47, 56, 101, 145, 214, 277
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	171
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	21, 238
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	57, 78, 228
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	6
MnlI	CCTC	2 cut(s)	135, 148
MseI	TTAA	2 cut(s)	192, 254
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	192, 254
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	3 cut(s)	81, 127, 279
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	192, 254
Tru9I	TTAA	2 cut(s)	192, 254
TspDTI	ATGAA	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.