RLG00000024088

NLI interacting factor-like phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
31664824 .. 31665898
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024088

Sequence Viewer

Length: 570 bp
ATGGCTGAAAAGAATACGAGCAAAGTTGGGTGCTCGGATGATGATCAGAGTGATGCTGAAGAGAGCAAAAACACATTGGATGACTCAACTCTCCCTCTTGAGAAACTCAACCTTGGCCCAGAAAAGAAGAAGAAGCTTCTGGTTATTGGTCTTGGAGGCTTGCTTTGTCATAGAGTATACGTCTTCTGCAAGGGAATGGTACTTGGACAATGCCTTGGATTGTGTGATGAAAGGGTTGAGGAGGAAGTTGTTGATCAAGTGGAGTGTACTGATTCAGGGTTCAAAACCTTGGAGAACCAAAAGAAGCCCATCTTTCTGAAAGAGTTGAAGAAAATATGGGAAAACAAGGCTCACACAGCCATCTTTCCTCCTGAATACAAGGTTGACCAAGTTGATGACAAGGCTTTAGGTCCTAATGGTGAGTTGAGGCTTTACTTGGAGGGACTTGCAGATGCCAATGATGTTACTTCTTATGTTAAAGATCATCCATTTGGACAGCCACCAATAACAACTACTCACTCTGATTGGGATTTCTATTCAAAGATCCTTACTCATTTCCAGAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.26

Weight (kDa)

5.01

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AclWI GGATC 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 201, 268
AgsI TTSAA 3 cut(s) 283, 328, 540
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 1 cut(s) 538
AoxI GGCC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 116, 410
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 2 cut(s) 317, 368
BclI TGATCA 2 cut(s) 43, 253
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 116, 410
BmsI GCATC 2 cut(s) 43, 442
BpiI GAAGAC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 112, 214, 288
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 112, 214, 288
BseGI GGATG 3 cut(s) 43, 85, 484
BseJI GATNNNNATC 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 35
BslFI GGGAC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 4 cut(s) 43, 253, 481, 543
BspANI GGCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 112, 214, 288
BssMI GATC 4 cut(s) 43, 253, 481, 543
BssNAI GTATAC 1 cut(s) 178
BssT1I CCWWGG 3 cut(s) 112, 214, 288
Bst1107I GTATAC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 161
BstF5I GGATG 3 cut(s) 43, 85, 484
BstKTI GATC 4 cut(s) 46, 256, 484, 546
BstMBI GATC 4 cut(s) 43, 253, 481, 543
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BstZ17I GTATAC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 3 cut(s) 43, 85, 484
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 116, 410
Csp6I GTAC 2 cut(s) 200, 267
CviQI GTAC 2 cut(s) 200, 267
DpnI GATC 4 cut(s) 45, 255, 483, 545
DpnII GATC 4 cut(s) 43, 253, 481, 543
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 112, 214, 288
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 410
EcoT14I CCWWGG 3 cut(s) 112, 214, 288
ErhI CCWWGG 3 cut(s) 112, 214, 288
FaiI YATR 4 cut(s) 171, 178, 337, 474
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 456
FbaI TGATCA 2 cut(s) 43, 253
FblI GTMKAC 1 cut(s) 177
FokI GGATG 3 cut(s) 50, 92, 471
HaeIII GGCC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 83, 272
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 178, 267, 385
Hpy188I TCNGA 4 cut(s) 37, 48, 318, 523
Hpy188III TCNNGA 3 cut(s) 98, 371, 559
Hpy8I GTNNAC 3 cut(s) 178, 267, 385
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 189, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 180
Ksp22I TGATCA 2 cut(s) 43, 253
Kzo9I GATC 4 cut(s) 43, 253, 481, 543
LpnPI CCDG 4 cut(s) 125, 132, 261, 384
LweI GCATC 2 cut(s) 43, 442
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 463
MalI GATC 4 cut(s) 45, 255, 483, 545
MboI GATC 4 cut(s) 43, 253, 481, 543
MboII GAAGA 5 cut(s) 71, 139, 142, 175, 340
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 7 cut(s) 105, 149, 232, 235, 378, 420, 433
MseI TTAA 2 cut(s) 477, 568
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 4 cut(s) 43, 253, 481, 543
PfeI GAWTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
PspPI GGNCC 2 cut(s) 116, 410
PspPPI RGGWCCY 1 cut(s) 410
PsuI RGATCY 1 cut(s) 543
RsaI GTAC 2 cut(s) 201, 268
RsaNI GTAC 2 cut(s) 200, 267
SaqAI TTAA 2 cut(s) 477, 568
Sau3AI GATC 4 cut(s) 43, 253, 481, 543
Sau96I GGNCC 2 cut(s) 116, 410
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 35
SetI ASST 6 cut(s) 114, 138, 183, 290, 384, 412
SfaNI GCATC 2 cut(s) 43, 442
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
StyI CCWWGG 3 cut(s) 112, 214, 288
TaiI ACGT 1 cut(s) 183
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 477, 568
Tru9I TTAA 2 cut(s) 477, 568
TspDTI ATGAA 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.