Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016565.1

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

786 .. 7595

Gene Structure 6810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4032 bp

atgcaggttatgatggctggacaaaaagtatcattcaagtctgatggaggtcgtgaatacgttttcacagtccatcaagctgcagtagagggacaggaaaaggttgatactgatattgaaagagggatgatttcatcagggacatacttcatcttcgagacaccaaagggttcaaatggactaaagatactaaatcaacgtaaaatcttcacgcagaaggaacttaatcttcaaaaacttggcatcggtggattaaatgcagagtttgaaagtatatttcgaagagcttttgcctcccgtgtactccctcatcatgtggtgaataaattggggattaagcatgtgaagggcatgctgctttatggaccgcccggtactggaaaaactctggtggctcggcaaatagggaaaattttgaatgggaaagatccaaagatcgtcaatggccctgaagtgttggactgttacgttggtgaaagtgagaagaatgttagggagctatttgctgatgctgaacaagatcaaatagttcatggggatgaaagtgatttgcatgtcataatatttgatgaaattgatgcaatttgtaagaaaagatcaggttccagccgtgatagttcacgcattcatgataatattgtgaacacattacttaccaagatggatggggtggagcctctcaataatattctgattattggattgactaacagaaaggagttgctggatgaagcccttttgagaccaggacgtctggaagttcaaattcagataggccttcctgataaaaaaggtcgcctacagattcttcaaattcatacaaacaagataaaggaaagctcttatcttgctcctgatgtgaaccttcgagagcttgctactcgtgcagaaaactatagcggtgcagaacttgaaggtgttgttagaagtgctgtgtcatttgcttttaatagacaactgagtctggacgatcttaagaagccagtggacgaggagaatattaaagttactatggatgattttcatcgcgcacttcaagaaattagacctacttatggagccttggcagaggagcttgaacgatgcaggttaaatggcattgtgaattgtggtgatcgacataggcacgcttatgacagagctatgctacttgtggagcaagttaaatcaagtgaaggaagtcctcttgtcaaatgccttctagagggccctagtggcactggcaaatctgccttagcagctaccattggcatccacagccgatttccatttgtcaggattatttcggctgagtccatgattggtcttcatgacgagagggcaaagtgtgttcaccttgaaaacgtcttcgaggaagcttacaagtcacaattgagcgtcattattttggatgacattgagaggttgatggagtttattcctattggtccaagattttcaaccatgatatatcaaacactatggggccttcttaagcgctttcctccaaaggggaacaagcttctggtgattggaacaactagtgaatttgaattcttggactcaattcgcttttgcaagacattctctcacacttacaatgttcctacattaacgagtgaggatgcaaagaaggtgctacaacagttgcaagtttttgctgatgaggatataaatgcggctgctgatgccctgaatgatatgcctatccagaagctctatacgttaattgagacagcaggccaatgtgccaagcctgtttactctggaaaaaagaaaataaatatcagtgacttctgtgctcccaactacaggacttttgtgatcagtaatagtgagaaccctgtttgggagcaacattttgatgttccggttgcgcactatgcttcagaggtgctttttgttgtgaaagatagtgatgttgtgggttcccagctcataggagttgtagcaatcccagttgagcgggtacattctgggatgaaagttgaggggacctttccaatccttggttccaatgggaaactctgtaagcctggagctgttttgagtttatcgattcagtatgttcctattgaaaaattgaccttttatgataatggggtaggttcagatcctgatcatcaaggggacaaggggttcctggtacttactttcctgttaggaaatgagtatgttcctattgaaaaattgaccttttatgataatggggtaggttcagatcctgatcatcaaggggttcctgacatatttgatgcaataagtgaggcccgccatttgatatacatagctgggtggtcactgtaccccaaagtcagattgcttcagaataataatggttcatcagatagcacattaggtgatctgctgaagaccgagtcacaggaaggtgtgaaagttctgattcttgttgggaacgatccaacttctattaagggatataaaaggttaaggcccgaggagaagtccactcgtgcatttgcaaattccatgatggggagaaatttaacacattattccgaaccttcagtacaggaccatgggtctcctcgtagtaggaatccctctaggaagagtcaatctcgaacagaaagatcacctactcgtcatagaaagtcccacagaggcagttctccaccaagtgagaaatattcaatgcgtcccaagtctccgaagcatgcaaggtcaccctcagctcgctctccttttctccagacaaaaaggttaagaagagctgaagctggaggagtgcctgagagagaacaggaaaggatcaatggtagggggatcggtcggagtttacaggaaggtggttctgagggagatgttggaagtgatagaacggagaaattttcgggaaggaatgatactgatggtaatacttcaagatcaaggcatggtacttctccatcagaaagaaaccgcaggagtagacatagacactcacctcaacatgctggtgatacaagagatgatgagagagtaactgagggccgtaacagaaatcatagcagagggaatgatagaagtatgcatagggaaaatgagactgtaagaacggagagaatgacagcaaaagacaatactggtcatatgtcttcaagatcaaggcatgatacttctccatctgatcaacaccgcaggagtagacatagatattactcacctcaacatgcttgtgatacaagacatggggagaaagtaatcgaaggctgtgaaagaaatcatagcagagggaatcatagaagtatgcatatggaaaatgagactgaaagaacggagagaatgacagcaagagagagtactagtcataggtcttcaagatcaaggcataatacttctccatcagatcgacaccgcagtagacatagatctcactcacctcaacatactggtgatacaagagataaggagaaagtaattgagggccgtgaaagaaatcatagccgagggaattatagaagcatgcgttgggaaaatgacactgaaagaatggagagaatgacagcaaaagagagttctggtcataggtcttcaagatcaaggcatggttcttctccatcagatcgacaccgcagcagtagacatagatatcactcacctcaccatgctggtgatacaagagataaggagaaagtaattgaaggctgtcaaagaaattataggagagagaacgatagaattatgcatagggaaaagcattcagataggaaatatgagactgaaagaatggagacaaggacagcaaaagacagttctggtcataggtctgcaagatcaagacacaggcaatctacttctccattgaatggacaccacaagaacagacaccgaactcattcatctcaacaggttgcagatatcagagctcgcaatgaggtgtctggtgatatccactcccccttccattgcaacaactttgttttgaaacttattgcttattttaatgacgactccatggaagcggtttttcatatgaatgcagattggcaaagttactttggtagagaattagtattcacaacttccatccaaacatcttttaaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

1343

Amino Acids

152.22

Weight (kDa)

9.33

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	750, 960
AatII	GACGTC	1 cut(s)	754
Acc16I	TGCGCA	1 cut(s)	1857
Acc36I	ACCTGC	1 cut(s)	1077
AccB7I	CCANNNNNTGG	2 cut(s)	1988, 3788
AccBSI	CCGCTC	1 cut(s)	1945
AccI	GTMKAC	4 cut(s)	2911, 3127, 3343, 3562
AccII	CGCG	1 cut(s)	1029
AclWI	GGATC	6 cut(s)	422, 2087, 2195, 2393, 2759, 2774
AcsI	RAATTY	9 cut(s)	411, 765, 813, 1526, 1532, 2464, 2482, 2828, 4025
AcuI	CTGAAG	6 cut(s)	471, 1851, 2288, 2369, 2490, 2736
AcyI	GRCGYC	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	2621
AfaI	GTAC	8 cut(s)	303, 376, 1950, 2127, 2285, 2511, 2881, 3283
AfeI	AGCGCT	1 cut(s)	1478
AfiI	CCNNNNNNNGG	9 cut(s)	377, 1055, 1204, 1490, 1791, 1828, 1988, 2475, 3788
AflII	CTTAAG	2 cut(s)	974, 1472
AhdI	GACNNNNNGTC	1 cut(s)	2521
AhlI	ACTAGT	2 cut(s)	1520, 3284
AjnI	CCWGG	3 cut(s)	745, 2014, 2121
AjuI	GAANNNNNNNTTGG	4 cut(s)	1975, 2007, 3433, 3465
AloI	GAACNNNNNNTCC	2 cut(s)	2102, 2134
Alw21I	GWGCWC	2 cut(s)	1783, 3850
Alw26I	GTCTC	9 cut(s)	152, 736, 1706, 2529, 2652, 3020, 3239, 3692, 3707
AlwI	GGATC	6 cut(s)	422, 2087, 2195, 2393, 2759, 2774
AlwNI	CAGNNNCTG	2 cut(s)	2096, 2204
Ama87I	CYCGRG	1 cut(s)	2435
Aor51HI	AGCGCT	1 cut(s)	1478
AoxI	GGCC	9 cut(s)	445, 775, 1207, 1465, 1720, 2247, 2432, 2971, 3406
ApaI	GGGCCC	1 cut(s)	1211
ApeKI	GCWGC	5 cut(s)	80, 355, 1238, 1661, 3555
ApoI	RAATTY	9 cut(s)	411, 765, 813, 1526, 1532, 2464, 2482, 2828, 4025
Asp700I	GAANNNNTTC	1 cut(s)	3817
AspLEI	GCGC	3 cut(s)	1031, 1479, 1858
AsuC2I	CCSGG	1 cut(s)	372
AsuII	TTCGAA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	2435
AvaII	GGWCC	4 cut(s)	365, 1427, 1974, 2515
BaeGI	GKGCMC	1 cut(s)	1211
BanII	GRGCYC	2 cut(s)	1211, 3850
BarI	GAAGNNNNNNTAC	2 cut(s)	2830, 2862
BauI	CACGAG	2 cut(s)	882, 2451
BbsI	GAAGAC	6 cut(s)	1298, 1339, 2357, 3069, 3288, 3504
Bbv12I	GWGCWC	2 cut(s)	1783, 3850
BbvCI	CCTCAGC	1 cut(s)	2671
BbvI	GCAGC	5 cut(s)	67, 342, 1250, 1648, 3567
BceAI	ACGGC	3 cut(s)	594, 2958, 3393
BciT130I	CCWGG	3 cut(s)	747, 2016, 2123
BclI	TGATCA	4 cut(s)	1803, 2098, 2206, 3109
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	9 cut(s)	152, 736, 1706, 2529, 2652, 3020, 3239, 3692, 3707
BcuI	ACTAGT	2 cut(s)	1520, 3284
BfaI	CTAG	5 cut(s)	1202, 1212, 1521, 2547, 3285
BfmI	CTRYAG	4 cut(s)	81, 800, 895, 1789
BfoI	RGCGCY	1 cut(s)	1480
BfrI	CTTAAG	2 cut(s)	974, 1472
BfuAI	ACCTGC	1 cut(s)	1077
BglI	GCCNNNNNGGC	1 cut(s)	1215
BglII	AGATCT	1 cut(s)	3350
BisI	GCNGC	6 cut(s)	81, 356, 1239, 1659, 1662, 3556
BlsI	GCNGC	6 cut(s)	82, 357, 1240, 1660, 1663, 3557
BmcAI	AGTACT	1 cut(s)	3283
Bme1390I	CCNGG	4 cut(s)	372, 747, 2016, 2123
Bme18I	GGWCC	4 cut(s)	365, 1427, 1974, 2515
BmeRI	GACNNNNNGTC	1 cut(s)	2521
BmeT110I	CYCGRG	1 cut(s)	2435
BmrFI	CCNGG	4 cut(s)	372, 747, 2016, 2123
BmrI	ACTGGG	1 cut(s)	1931
BmsI	GCATC	8 cut(s)	252, 499, 568, 1073, 1260, 1594, 1657, 2224
BmuI	ACTGGG	1 cut(s)	1931
BpiI	GAAGAC	6 cut(s)	1298, 1339, 2357, 3069, 3288, 3504
BplI	GAGNNNNNCTC	2 cut(s)	2545, 2577
BpmI	CTGGAG	3 cut(s)	2037, 2675, 2742
Bpu10I	CCTNAGC	2 cut(s)	1234, 2671
Bpu14I	TTCGAA	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	2036
BsaBI	GATNNNNATC	3 cut(s)	1023, 2097, 2205
BsaHI	GRCGYC	1 cut(s)	751
BsaI	GGTCTC	2 cut(s)	736, 2529
BsaJI	CCNNGG	6 cut(s)	1062, 1987, 2436, 2518, 3427, 3936
BsaWI	WCCGGW	1 cut(s)	1849
Bsc4I	CCNNNNNNNGG	9 cut(s)	377, 1055, 1204, 1490, 1791, 1828, 1988, 2475, 3788
Bse1I	ACTGG	6 cut(s)	382, 983, 1225, 1937, 3070, 3376
Bse3DI	GCAATG	2 cut(s)	3859, 3886
Bse8I	GATNNNNATC	3 cut(s)	1023, 2097, 2205
BseBI	CCWGG	3 cut(s)	747, 2016, 2123
BseCI	ATCGAT	1 cut(s)	2036
BseDI	CCNNGG	6 cut(s)	1062, 1987, 2436, 2518, 3427, 3936
BseJI	GATNNNNATC	3 cut(s)	1023, 2097, 2205
BseLI	CCNNNNNNNGG	9 cut(s)	377, 1055, 1204, 1490, 1791, 1828, 1988, 2475, 3788
BseMI	GCAATG	2 cut(s)	3859, 3886
BseMII	CTCAG	6 cut(s)	950, 1281, 2685, 2724, 2787, 2958
BseNI	ACTGG	6 cut(s)	382, 983, 1225, 1937, 3070, 3376
BseRI	GAGGAG	5 cut(s)	1007, 1085, 2453, 2517, 2739
BseSI	GKGCMC	1 cut(s)	1211
BseXI	GCAGC	5 cut(s)	67, 342, 1250, 1648, 3567
BseYI	CCCAGC	2 cut(s)	1911, 2270
BsgI	GTGCAG	2 cut(s)	906, 924
Bsh1236I	CGCG	1 cut(s)	1029
Bsh1285I	CGRYCG	1 cut(s)	2773
BshFI	GGCC	9 cut(s)	447, 777, 1209, 1467, 1722, 2249, 2434, 2973, 3408
BshVI	ATCGAT	1 cut(s)	2036
BsiEI	CGRYCG	1 cut(s)	2773
BsiHKAI	GWGCWC	2 cut(s)	1783, 3850
BsiHKCI	CYCGRG	1 cut(s)	2435
BsiSI	CCGG	2 cut(s)	372, 1850
BslFI	GGGAC	6 cut(s)	105, 154, 1987, 2123, 2581, 2625
BslI	CCNNNNNNNGG	9 cut(s)	377, 1055, 1204, 1490, 1791, 1828, 1988, 2475, 3788
BsmAI	GTCTC	9 cut(s)	152, 736, 1706, 2529, 2652, 3020, 3239, 3692, 3707
BsmFI	GGGAC	6 cut(s)	105, 154, 1987, 2123, 2581, 2625
BsmI	GAATGC	3 cut(s)	624, 3679, 3964
BsnI	GGCC	9 cut(s)	447, 777, 1209, 1467, 1722, 2249, 2434, 2973, 3408
Bso31I	GGTCTC	2 cut(s)	736, 2529
BsoBI	CYCGRG	1 cut(s)	2435
Bsp119I	TTCGAA	1 cut(s)	280
Bsp120I	GGGCCC	1 cut(s)	1207
Bsp1286I	GDGCHC	3 cut(s)	1211, 1783, 3850
Bsp19I	CCATGG	2 cut(s)	2518, 3936
BspANI	GGCC	9 cut(s)	447, 777, 1209, 1467, 1722, 2249, 2434, 2973, 3408
BspCNI	CTCAG	6 cut(s)	951, 1282, 2684, 2725, 2788, 2959
BspDI	ATCGAT	1 cut(s)	2036
BspFNI	CGCG	1 cut(s)	1029
BspHI	TCATGA	2 cut(s)	628, 1309
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	6 cut(s)	422, 2087, 2195, 2393, 2759, 2774
BspQI	GCTCTTC	2 cut(s)	277, 2704
BspT104I	TTCGAA	1 cut(s)	280
BspTI	CTTAAG	2 cut(s)	974, 1472
BspTNI	GGTCTC	2 cut(s)	736, 2529
BsrBI	CCGCTC	1 cut(s)	1945
BsrDI	GCAATG	2 cut(s)	3859, 3886
BsrI	ACTGG	6 cut(s)	382, 983, 1225, 1937, 3070, 3376
BssECI	CCNNGG	6 cut(s)	1062, 1987, 2436, 2518, 3427, 3936
BssNI	GRCGYC	1 cut(s)	751
BssSI	CACGAG	2 cut(s)	882, 2451
BssT1I	CCWWGG	4 cut(s)	1062, 1987, 2518, 3936
Bst2BI	CACGAG	2 cut(s)	882, 2451
Bst2UI	CCWGG	3 cut(s)	747, 2016, 2123
Bst4CI	ACNGT	6 cut(s)	70, 464, 1626, 2283, 3031, 3734
Bst6I	CTCTTC	3 cut(s)	277, 2546, 2704
BstACI	GRCGYC	1 cut(s)	751
BstAFI	CTTAAG	2 cut(s)	974, 1472
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	9 cut(s)	353, 876, 1128, 1720, 2251, 2658, 2677, 3446, 3850
BstDEI	CTNAG	7 cut(s)	959, 1234, 1290, 2671, 2733, 2796, 2967
BstDSI	CCRYGG	2 cut(s)	2518, 3936
BstEII	GGTNACC	1 cut(s)	2664
BstENI	CCTNNNNNAGG	1 cut(s)	1202
BstFNI	CGCG	1 cut(s)	1029
BstH2I	RGCGCY	1 cut(s)	1480
BstHHI	GCGC	3 cut(s)	1031, 1479, 1858
BstMAI	GTCTC	9 cut(s)	152, 736, 1706, 2529, 2652, 3020, 3239, 3692, 3707
BstMCI	CGRYCG	1 cut(s)	2773
BstMWI	GCNNNNNNNGC	6 cut(s)	884, 1215, 1238, 1257, 1667, 1862
BstNI	CCWGG	3 cut(s)	747, 2016, 2123
BstNSI	RCATGY	7 cut(s)	344, 355, 557, 2660, 2936, 3155, 3448
BstPI	GGTNACC	1 cut(s)	2664
BstSCI	CCNGG	4 cut(s)	370, 745, 2014, 2121
BstSFI	CTRYAG	4 cut(s)	81, 800, 895, 1789
BstSLI	GKGCMC	1 cut(s)	1211
BstUI	CGCG	1 cut(s)	1029
BstV1I	GCAGC	5 cut(s)	67, 342, 1250, 1648, 3567
BstV2I	GAAGAC	6 cut(s)	1298, 1339, 2357, 3069, 3288, 3504
BstX2I	RGATCY	4 cut(s)	427, 2092, 2200, 3350
BstYI	RGATCY	4 cut(s)	427, 2092, 2200, 3350
Bsu15I	ATCGAT	1 cut(s)	2036
BsuRI	GGCC	9 cut(s)	447, 777, 1209, 1467, 1722, 2249, 2434, 2973, 3408
BsuTUI	ATCGAT	1 cut(s)	2036
BtgI	CCRYGG	2 cut(s)	2518, 3936
BtgZI	GCGATG	1 cut(s)	1010
BtsIMutI	CAGTG	5 cut(s)	990, 1218, 1774, 2279, 3462
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	9 cut(s)	353, 876, 1128, 1720, 2251, 2658, 2677, 3446, 3850
CaiI	CAGNNNCTG	2 cut(s)	2096, 2204
CciI	TCATGA	2 cut(s)	628, 1309
CfoI	GCGC	3 cut(s)	1031, 1479, 1858
ClaI	ATCGAT	1 cut(s)	2036
CseI	GACGC	2 cut(s)	1366, 2627
Csp6I	GTAC	8 cut(s)	302, 375, 1949, 2126, 2284, 2510, 2880, 3282
CviQI	GTAC	8 cut(s)	302, 375, 1949, 2126, 2284, 2510, 2880, 3282
DdeI	CTNAG	7 cut(s)	959, 1234, 1290, 2671, 2733, 2796, 2967
DraI	TTTAAA	1 cut(s)	4024
DraIII	CACNNNGTG	1 cut(s)	2621
DrdI	GACNNNNNNGTC	2 cut(s)	750, 960
DriI	GACNNNNNGTC	1 cut(s)	2521
DseDI	GACNNNNNNGTC	2 cut(s)	750, 960
Eam1104I	CTCTTC	3 cut(s)	277, 2546, 2704
Eam1105I	GACNNNNNGTC	1 cut(s)	2521
EarI	CTCTTC	3 cut(s)	277, 2546, 2704
Ecl136II	GAGCTC	1 cut(s)	3848
Eco130I	CCWWGG	4 cut(s)	1062, 1987, 2518, 3936
Eco147I	AGGCCT	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	1211, 3850
Eco31I	GGTCTC	2 cut(s)	736, 2529
Eco32I	GATATC	3 cut(s)	3572, 3841, 3871
Eco47I	GGWCC	4 cut(s)	365, 1427, 1974, 2515
Eco47III	AGCGCT	1 cut(s)	1478
Eco53kI	GAGCTC	1 cut(s)	3848
Eco57I	CTGAAG	6 cut(s)	471, 1851, 2288, 2369, 2490, 2736
Eco88I	CYCGRG	1 cut(s)	2435
Eco91I	GGTNACC	1 cut(s)	2664
EcoICRI	GAGCTC	1 cut(s)	3848
EcoNI	CCTNNNNNAGG	1 cut(s)	1202
EcoO109I	RGGNCCY	4 cut(s)	1207, 1208, 1465, 1974
EcoO65I	GGTNACC	1 cut(s)	2664
EcoRI	GAATTC	1 cut(s)	1532
EcoRII	CCWGG	3 cut(s)	745, 2014, 2121
EcoRV	GATATC	3 cut(s)	3572, 3841, 3871
EcoT14I	CCWWGG	4 cut(s)	1062, 1987, 2518, 3936
EcoT22I	ATGCAT	3 cut(s)	3015, 3234, 3669
EcoT38I	GRGCYC	2 cut(s)	1211, 3850
ErhI	CCWWGG	4 cut(s)	1062, 1987, 2518, 3936
FaqI	GGGAC	6 cut(s)	105, 154, 1987, 2123, 2581, 2625
FauI	CCCGC	2 cut(s)	1938, 2258
FauNDI	CATATG	3 cut(s)	3072, 3234, 3954
FbaI	TGATCA	4 cut(s)	1803, 2098, 2206, 3109
FblI	GTMKAC	4 cut(s)	2911, 3127, 3343, 3562
Fnu4HI	GCNGC	6 cut(s)	81, 356, 1239, 1659, 1662, 3556
FriOI	GRGCYC	2 cut(s)	1211, 3850
Fsp4HI	GCNGC	6 cut(s)	81, 356, 1239, 1659, 1662, 3556
FspBI	CTAG	5 cut(s)	1202, 1212, 1521, 2547, 3285
FspI	TGCGCA	1 cut(s)	1857
GlaI	GCGC	3 cut(s)	1030, 1478, 1857
GluI	GCNGC	6 cut(s)	81, 356, 1239, 1659, 1662, 3556
GsaI	CCCAGC	2 cut(s)	1915, 2274
GsuI	CTGGAG	3 cut(s)	2037, 2675, 2742
HaeII	RGCGCY	1 cut(s)	1480
HaeIII	GGCC	9 cut(s)	447, 777, 1209, 1467, 1722, 2249, 2434, 2973, 3408
HapII	CCGG	2 cut(s)	372, 1850
HgaI	GACGC	2 cut(s)	1366, 2627
HhaI	GCGC	3 cut(s)	1031, 1479, 1858
Hin1I	GRCGYC	1 cut(s)	751
Hin6I	GCGC	3 cut(s)	1029, 1477, 1856
HinP1I	GCGC	3 cut(s)	1029, 1477, 1856
HindIII	AAGCTT	2 cut(s)	1356, 1499
HpaII	CCGG	2 cut(s)	372, 1850
HpyCH4III	ACNGT	6 cut(s)	70, 464, 1626, 2283, 3031, 3734
HpyCH4IV	ACGT	6 cut(s)	60, 199, 468, 751, 1344, 1703
HpyF10VI	GCNNNNNNNGC	6 cut(s)	884, 1215, 1238, 1257, 1667, 1862
HpyF3I	CTNAG	7 cut(s)	959, 1234, 1290, 2671, 2733, 2796, 2967
HpySE526I	ACGT	6 cut(s)	60, 199, 468, 751, 1344, 1703
Hsp92I	GRCGYC	1 cut(s)	751
HspAI	GCGC	3 cut(s)	1029, 1477, 1856
Ksp22I	TGATCA	4 cut(s)	1803, 2098, 2206, 3109
LguI	GCTCTTC	2 cut(s)	277, 2704
LmnI	GCTCC	9 cut(s)	496, 673, 856, 1058, 1072, 1156, 1786, 1831, 2018
Lsp1109I	GCAGC	5 cut(s)	67, 342, 1250, 1648, 3567
LweI	GCATC	8 cut(s)	252, 499, 568, 1073, 1260, 1594, 1657, 2224
MaeI	CTAG	5 cut(s)	1202, 1212, 1521, 2547, 3285
MaeII	ACGT	6 cut(s)	60, 199, 468, 751, 1344, 1703
MbiI	CCGCTC	1 cut(s)	1945
MfeI	CAATTG	1 cut(s)	1370
MflI	RGATCY	4 cut(s)	427, 2092, 2200, 3350
MhlI	GDGCHC	3 cut(s)	1211, 1783, 3850
MlyI	GAGTC	6 cut(s)	970, 1301, 1535, 2366, 2563, 3926
MmeI	TCCRAC	4 cut(s)	438, 2426, 2753, 2788
Mph1103I	ATGCAT	3 cut(s)	3015, 3234, 3669
MroXI	GAANNNNTTC	1 cut(s)	3817
MslI	CAYNNNNRTG	8 cut(s)	537, 1131, 1842, 2937, 3156, 3372, 3591, 3957
MspCI	CTTAAG	2 cut(s)	974, 1472
MspI	CCGG	2 cut(s)	372, 1850
MspR9I	CCNGG	4 cut(s)	372, 747, 2016, 2123
MunI	CAATTG	1 cut(s)	1370
Mva1269I	GAATGC	3 cut(s)	624, 3679, 3964
MvaI	CCWGG	3 cut(s)	747, 2016, 2123
MvnI	CGCG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	6 cut(s)	884, 1215, 1238, 1257, 1667, 1862
NciI	CCSGG	1 cut(s)	372
NcoI	CCATGG	2 cut(s)	2518, 3936
NdeI	CATATG	3 cut(s)	3072, 3234, 3954
NmeAIII	GCCGAG	2 cut(s)	376, 3452
NmuCI	GTSAC	5 cut(s)	1365, 1769, 2277, 2358, 2664
NsbI	TGCGCA	1 cut(s)	1857
NsiI	ATGCAT	3 cut(s)	3015, 3234, 3669
NspI	RCATGY	7 cut(s)	344, 355, 557, 2660, 2936, 3155, 3448
NspV	TTCGAA	1 cut(s)	280
PaeI	GCATGC	3 cut(s)	355, 2660, 3448
PagI	TCATGA	2 cut(s)	628, 1309
PceI	AGGCCT	1 cut(s)	777
PciSI	GCTCTTC	2 cut(s)	277, 2704
PctI	GAATGC	3 cut(s)	624, 3679, 3964
PdmI	GAANNNNTTC	1 cut(s)	3817
PfeI	GAWTC	5 cut(s)	805, 2038, 2383, 2539, 3217
PflFI	GACNNNGTC	1 cut(s)	2356
PflMI	CCANNNNNTGG	2 cut(s)	1988, 3788
PkrI	GCNGC	6 cut(s)	82, 357, 1240, 1660, 1663, 3557
PleI	GAGTC	6 cut(s)	969, 1300, 1535, 2365, 2562, 3926
PpsI	GAGTC	6 cut(s)	969, 1300, 1535, 2365, 2562, 3926
PpuMI	RGGWCCY	1 cut(s)	1974
Psp124BI	GAGCTC	1 cut(s)	3850
Psp5II	RGGWCCY	1 cut(s)	1974
Psp6I	CCWGG	3 cut(s)	745, 2014, 2121
PspEI	GGTNACC	1 cut(s)	2664
PspFI	CCCAGC	2 cut(s)	1911, 2270
PspGI	CCWGG	3 cut(s)	745, 2014, 2121
PspOMI	GGGCCC	1 cut(s)	1207
PspPPI	RGGWCCY	1 cut(s)	1974
PsrI	GAACNNNNNNTAC	2 cut(s)	2493, 2525
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	2 cut(s)	2096, 2204
PsuI	RGATCY	4 cut(s)	427, 2092, 2200, 3350
PsyI	GACNNNGTC	1 cut(s)	2356
RsaI	GTAC	8 cut(s)	303, 376, 1950, 2127, 2285, 2511, 2881, 3283
RsaNI	GTAC	8 cut(s)	302, 375, 1949, 2126, 2284, 2510, 2880, 3282
RseI	CAYNNNNRTG	8 cut(s)	537, 1131, 1842, 2937, 3156, 3372, 3591, 3957
SacI	GAGCTC	1 cut(s)	3850
SapI	GCTCTTC	2 cut(s)	277, 2704
SatI	GCNGC	6 cut(s)	81, 356, 1239, 1659, 1662, 3556
ScaI	AGTACT	1 cut(s)	3283
SchI	GAGTC	6 cut(s)	970, 1301, 1535, 2366, 2563, 3926
ScrFI	CCNGG	4 cut(s)	372, 747, 2016, 2123
SduI	GDGCHC	3 cut(s)	1211, 1783, 3850
SfaNI	GCATC	8 cut(s)	252, 499, 568, 1073, 1260, 1594, 1657, 2224
SfcI	CTRYAG	4 cut(s)	81, 800, 895, 1789
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	4 cut(s)	365, 1427, 1974, 2515
SmiMI	CAYNNNNRTG	8 cut(s)	537, 1131, 1842, 2937, 3156, 3372, 3591, 3957
SmlI	CTYRAG	2 cut(s)	974, 1472
SmoI	CTYRAG	2 cut(s)	974, 1472
SpeI	ACTAGT	2 cut(s)	1520, 3284
SphI	GCATGC	3 cut(s)	355, 2660, 3448
SseBI	AGGCCT	1 cut(s)	777
SspI	AATATT	5 cut(s)	564, 637, 688, 1000, 2630
SspMI	CTAG	5 cut(s)	1202, 1212, 1521, 2547, 3285
SstI	GAGCTC	1 cut(s)	3850
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	4 cut(s)	370, 745, 2014, 2121
StyI	CCWWGG	4 cut(s)	1062, 1987, 2518, 3936
TaaI	ACNGT	6 cut(s)	70, 464, 1626, 2283, 3031, 3734
TaiI	ACGT	6 cut(s)	63, 202, 471, 754, 1347, 1706
TaqII	GACCGA	2 cut(s)	2369, 2759
TatI	WGTACW	3 cut(s)	301, 2509, 3281
TauI	GCSGC	1 cut(s)	1661
TfiI	GAWTC	5 cut(s)	805, 2038, 2383, 2539, 3217
TscAI	CASTG	5 cut(s)	990, 1225, 1774, 2286, 3469
TseFI	GTSAC	5 cut(s)	1365, 1769, 2277, 2358, 2664
TseI	GCWGC	5 cut(s)	80, 355, 1238, 1661, 3555
Tsp45I	GTSAC	5 cut(s)	1365, 1769, 2277, 2358, 2664
TspGWI	ACGGA	3 cut(s)	2837, 3053, 3272
TspRI	CASTG	5 cut(s)	990, 1225, 1774, 2286, 3469
Tth111I	GACNNNGTC	1 cut(s)	2356
Van91I	CCANNNNNTGG	2 cut(s)	1988, 3788
Vha464I	CTTAAG	2 cut(s)	974, 1472
VpaK11BI	GGWCC	4 cut(s)	365, 1427, 1974, 2515
XagI	CCTNNNNNAGG	1 cut(s)	1202
XapI	RAATTY	9 cut(s)	411, 765, 813, 1526, 1532, 2464, 2482, 2828, 4025
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	7 cut(s)	344, 355, 557, 2660, 2936, 3155, 3448
XmiI	GTMKAC	4 cut(s)	2911, 3127, 3343, 3562
XmnI	GAANNNNTTC	1 cut(s)	3817
XspI	CTAG	5 cut(s)	1202, 1212, 1521, 2547, 3285
ZraI	GACGTC	1 cut(s)	752
ZrmI	AGTACT	1 cut(s)	3283
Zsp2I	ATGCAT	3 cut(s)	3015, 3234, 3669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.