Rw3G016820

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000875
Physical Location & Seq
Forward (+)
18004705 .. 18006183
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016820.1

Sequence Viewer

Length: 684 bp
ATGCATGGTGACTATGATAGTGTTTCCTGTCACAGTGATGGCAATGACTGCGATAACGAAGACACTGGAAGCCATTGTGGCCTTTCACTACAGAAGCTGAATTTAGGACCAAGAAAGAAGCTTCTTGTTTTCAATCTCCATGGGTGTTTAATCAACAGGTCTTCTGCCCAAGAGAAGAATGTTGATAATATCTCCGAGTGTATGATGGGAAGACTGAGAAACAGGCTGTCATTTGTTTGGGATCAAGTTGAATGCACTGAAACCGGGTTCAAGTTGGTAGAGAATAGATCGAAGCCTTCGTTTCTTAAAGAACTGAAGCAATTGTGGAAATATCTTGATTGGCAGTATTCTGAATCCGACACACTGAGGAACTGTATCTATTTGGTTCTGTCTTCTCACACACGGATATTCCTTGACTCCTACACATCTGACAATGCATTAGATCCAAAGAGAGAGCTTGGAAAGTTTTTGGATGGACTTGCAGTAGCAAAGGATGTTCAGCTTTATGTGAAGGACAACCCGTTTGGTCAGCCTGCGATTTCACTGGACCGTCCTGATTGGAATTTTTACTACACACTGTTTTATCCGAACGCTGGGGAATTGACAAAAGCCTTGAGATTTGAATTGAATGAGTTCATGTGCTACTTCCTTATGGTCCTGGGCTCCTTGATATATCTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

227

Amino Acids

26.25

Weight (kDa)

5.43

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 249, 437
AcsI RAATTY 2 cut(s) 100, 562
AcuI CTGAAG 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 6 cut(s) 133, 251, 271, 623, 628, 680
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 4 cut(s) 97, 121, 457, 502
AluI AGCT 4 cut(s) 97, 121, 457, 502
AlwI GGATC 2 cut(s) 249, 437
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 100, 562
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
Asp700I GAANNNNTTC 1 cut(s) 632
AspS9I GGNCC 3 cut(s) 107, 547, 655
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 3 cut(s) 107, 547, 655
BanII GRGCYC 1 cut(s) 665
BbsI GAAGAC 4 cut(s) 66, 153, 217, 384
BccI CCATC 3 cut(s) 32, 199, 467
BciT130I CCWGG 1 cut(s) 659
BcnI CCSGG 1 cut(s) 265
BfmI CTRYAG 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 265, 659
Bme18I GGWCC 3 cut(s) 107, 547, 655
BmgT120I GGNCC 3 cut(s) 107, 547, 655
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 2 cut(s) 265, 659
BpiI GAAGAC 4 cut(s) 66, 153, 217, 384
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 139, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 2 cut(s) 70, 549
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 139, 658
BseGI GGATG 2 cut(s) 478, 499
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 206, 356
BseNI ACTGG 2 cut(s) 70, 549
BseYI CCCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 593
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 665
Bsp143I GATC 3 cut(s) 241, 287, 442
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 207, 357
BspLI GGNNCC 1 cut(s) 664
BspPI GGATC 2 cut(s) 249, 437
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 2 cut(s) 70, 549
BssECI CCNNGG 2 cut(s) 139, 658
BssMI GATC 3 cut(s) 241, 287, 442
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 4 cut(s) 35, 374, 551, 579
BstAPI GCANNNNNTGC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 215, 365
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 478, 499
BstKTI GATC 3 cut(s) 244, 290, 445
BstMBI GATC 3 cut(s) 241, 287, 442
BstMWI GCNNNNNNNGC 2 cut(s) 48, 78
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 263, 657
BstSFI CTRYAG 1 cut(s) 89
BstV2I GAAGAC 4 cut(s) 66, 153, 217, 384
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 478, 499
BtsIMutI CAGTG 6 cut(s) 40, 63, 255, 362, 542, 575
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 107, 547, 655
CviAII CATG 3 cut(s) 5, 140, 637
DdeI CTNAG 2 cut(s) 215, 365
DpnI GATC 3 cut(s) 243, 289, 444
DpnII GATC 3 cut(s) 241, 287, 442
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 665
Eco47I GGWCC 3 cut(s) 107, 547, 655
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 2 cut(s) 6, 439
EcoT38I GRGCYC 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 8, 143, 640
FaiI YATR 8 cut(s) 6, 15, 141, 203, 507, 638, 653, 673
FatI CATG 3 cut(s) 4, 139, 636
FokI GGATG 2 cut(s) 485, 506
FriOI GRGCYC 1 cut(s) 665
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 264
Hin1II CATG 3 cut(s) 8, 143, 640
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 353, 416
HpaII CCGG 1 cut(s) 264
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 5 cut(s) 196, 352, 358, 430, 588
Hpy188III TCNNGA 3 cut(s) 335, 554, 677
HpyAV CCTTC 2 cut(s) 306, 505
HpyCH4III ACNGT 4 cut(s) 35, 374, 551, 579
HpyCH4V TGCA 4 cut(s) 4, 255, 437, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 78
HpyF3I CTNAG 2 cut(s) 215, 365
Hsp92II CATG 3 cut(s) 8, 143, 640
Kzo9I GATC 3 cut(s) 241, 287, 442
LmnI GCTCC 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 8, 29
MalI GATC 3 cut(s) 243, 289, 444
MboI GATC 3 cut(s) 241, 287, 442
MboII GAAGA 5 cut(s) 71, 153, 187, 222, 384
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 5 cut(s) 100, 320, 562, 599, 623
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 1 cut(s) 360
Mph1103I ATGCAT 2 cut(s) 6, 439
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 2 cut(s) 149, 306
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 2 cut(s) 265, 659
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 2 cut(s) 48, 78
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 139
NdeII GATC 3 cut(s) 241, 287, 442
NlaIII CATG 3 cut(s) 8, 143, 640
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 2 cut(s) 8, 29
NsiI ATGCAT 2 cut(s) 6, 439
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 353
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 657
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 664
PspPI GGNCC 3 cut(s) 107, 547, 655
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 2 cut(s) 149, 306
Sau3AI GATC 3 cut(s) 241, 287, 442
Sau96I GGNCC 3 cut(s) 107, 547, 655
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 265, 659
SduI GDGCHC 1 cut(s) 665
SetI ASST 5 cut(s) 99, 123, 161, 459, 504
SfcI CTRYAG 1 cut(s) 89
SinI GGWCC 3 cut(s) 107, 547, 655
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 5 cut(s) 100, 320, 562, 599, 623
StyD4I CCNGG 2 cut(s) 263, 657
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 4 cut(s) 35, 374, 551, 579
TaqI TCGA 1 cut(s) 290
TasI AATT 5 cut(s) 100, 320, 562, 599, 623
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 149, 306
Tru9I TTAA 2 cut(s) 149, 306
TscAI CASTG 6 cut(s) 40, 70, 262, 369, 549, 582
TseFI GTSAC 2 cut(s) 8, 29
Tsp45I GTSAC 2 cut(s) 8, 29
TspDTI ATGAA 1 cut(s) 625
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 6 cut(s) 40, 70, 262, 369, 549, 582
VpaK11BI GGWCC 3 cut(s) 107, 547, 655
XapI RAATTY 2 cut(s) 100, 562
XmnI GAANNNNTTC 1 cut(s) 632
Zsp2I ATGCAT 2 cut(s) 6, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.