AT2G36540

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000875
Physical Location & Seq
Forward (+)
15325237 .. 15326449
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36540.1

Sequence Viewer

Length: 750 bp
ATGGCTGAAGAAAAGATCAAGAAGAGCTTGCTTGCTGCGGACGACAGCGACGATGAGTACTCAAGAGGTGATACAGTTTCAGATCAGACAGAACTGAGTTCGATTCTTGATAAACTTAGTCTAGAACCTAAGACGGAGAAAAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCTTCTTCACAGAGTCCACAAAAAAGAGTTGCGTAAGAAACCCAAGAACCGCTCTCCTGATGCTTCTTGTGGGCCAAATCTTGTGTATAAGAGACCGTTTGCTGAAGAGTTTATGAAGTTTTGTCTTGAGAGATTTGAAGTTGGTATTTGGTCCTCTGCTTGCGAGTTAGTCTCTTCACTAAACATTCTTATAGTTACAGGACCAAGAGAGTGTACGGACAGTGGATATAAAACACTAGAGAACCGTTACAAGCCTTTGTTCTTTAAGGATCTCTCTAAAGTGTTCAAGTGCTTTAAAGGCTTCTCTGCTTCAAACACCATCTTCATTGATGATGAACCATATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTTCCCAATGAGCTATGATGCTTCTAACATAAAGGATAATTTACTTGATCCGGAAGGAGAGTTGTGTTCTTACTTGGAAGGTTTGGCAAAATCATCGGATGTTCAGGCTTACATAAAAGTGCATTCTTTTGGACGGCCCATGATCGATTCTTCTCATCCTGATTGGTCTTTCTACAGCAACGTTTCAAAGATTGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

249

Amino Acids

28.16

Weight (kDa)

6.46

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 49 - 218 3.9e-21 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 2 cut(s) 38, 223
AclI AACGTT 1 cut(s) 729
AclWI GGATC 2 cut(s) 450, 590
AcuI CTGAAG 2 cut(s) 27, 297
AfaI GTAC 2 cut(s) 59, 388
AgsI TTSAA 4 cut(s) 311, 460, 486, 735
AluBI AGCT 3 cut(s) 27, 521, 561
AluI AGCT 3 cut(s) 27, 521, 561
Alw26I GTCTC 2 cut(s) 259, 349
AlwI GGATC 2 cut(s) 450, 590
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 2 cut(s) 245, 683
ApeKI GCWGC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 245, 324, 374, 684
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 2 cut(s) 324, 374
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 698
BcgI CGANNNNNNTGC 2 cut(s) 624, 658
BcoDI GTCTC 2 cut(s) 259, 349
BfaI CTAG 2 cut(s) 122, 410
BfmI CTRYAG 1 cut(s) 721
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 324, 374
BmgT120I GGNCC 4 cut(s) 245, 324, 374, 684
BmsI GCATC 2 cut(s) 223, 556
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpuEI CTTGAG 3 cut(s) 46, 178, 320
Bsa29I ATCGAT 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 598
Bse1I ACTGG 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 598
BseCI ATCGAT 1 cut(s) 693
BseGI GGATG 2 cut(s) 652, 703
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 547
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 2 cut(s) 247, 685
BshVI ATCGAT 1 cut(s) 693
BsiSI CCGG 1 cut(s) 599
BsmAI GTCTC 2 cut(s) 259, 349
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 2 cut(s) 247, 685
Bso31I GGTCTC 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 15, 82, 442, 595, 690
BspACI CCGC 2 cut(s) 38, 223
BspANI GGCC 2 cut(s) 247, 685
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 693
BspEI TCCGGA 1 cut(s) 598
BspPI GGATC 2 cut(s) 450, 590
BspQI GCTCTTC 2 cut(s) 17, 528
BspTNI GGTCTC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 547
BssMI GATC 5 cut(s) 15, 82, 442, 595, 690
Bst4CI ACNGT 4 cut(s) 76, 270, 395, 419
Bst6I CTCTTC 4 cut(s) 17, 273, 352, 528
BstC8I GCNNGC 3 cut(s) 29, 33, 334
BstDEI CTNAG 4 cut(s) 95, 116, 129, 164
BstF5I GGATG 2 cut(s) 652, 703
BstKTI GATC 5 cut(s) 18, 85, 445, 598, 693
BstMAI GTCTC 2 cut(s) 259, 349
BstMBI GATC 5 cut(s) 15, 82, 442, 595, 690
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 721
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 2 cut(s) 247, 685
BsuTUI ATCGAT 1 cut(s) 693
BtsCI GGATG 2 cut(s) 652, 703
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 29, 33, 334
Cfr13I GGNCC 4 cut(s) 245, 324, 374, 684
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 2 cut(s) 58, 387
CviAII CATG 1 cut(s) 688
CviJI RGCY 9 cut(s) 5, 27, 247, 427, 474, 521, 561, 656, 685
CviKI_1 RGCY 9 cut(s) 5, 27, 247, 427, 474, 521, 561, 656, 685
CviQI GTAC 2 cut(s) 58, 387
DdeI CTNAG 4 cut(s) 95, 116, 129, 164
DpnI GATC 5 cut(s) 17, 84, 444, 597, 692
DpnII GATC 5 cut(s) 15, 82, 442, 595, 690
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 4 cut(s) 17, 273, 352, 528
EarI CTCTTC 4 cut(s) 17, 273, 352, 528
Eco31I GGTCTC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 324, 374
Eco57I CTGAAG 2 cut(s) 27, 297
FaeI CATG 1 cut(s) 691
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 134, 166
FatI CATG 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 659, 690
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 122, 410
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 247, 685
HapII CCGG 1 cut(s) 599
Hin1II CATG 1 cut(s) 691
HinfI GANTC 4 cut(s) 103, 160, 186, 695
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 190, 387
Hpy188I TCNGA 3 cut(s) 82, 87, 646
Hpy8I GTNNAC 2 cut(s) 190, 387
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 596, 620
HpyCH4III ACNGT 4 cut(s) 76, 270, 395, 419
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 1 cut(s) 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 4 cut(s) 95, 116, 129, 164
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 1 cut(s) 691
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 5 cut(s) 15, 82, 442, 595, 690
LguI GCTCTTC 2 cut(s) 17, 528
LpnPI CCDG 7 cut(s) 243, 357, 528, 546, 612, 638, 720
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 223, 556
MaeI CTAG 2 cut(s) 122, 410
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 367, 419
MalI GATC 5 cut(s) 17, 84, 444, 597, 692
MbiI CCGCTC 1 cut(s) 225
MboI GATC 5 cut(s) 15, 82, 442, 595, 690
MflI RGATCY 1 cut(s) 442
MluCI AATT 1 cut(s) 586
MlyI GAGTC 2 cut(s) 169, 195
MnlI CCTC 2 cut(s) 59, 337
MroI TCCGGA 1 cut(s) 598
MseI TTAA 3 cut(s) 438, 468, 748
MslI CAYNNNNRTG 1 cut(s) 665
MspI CCGG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 670
MwoI GCNNNNNNNGC 1 cut(s) 471
NdeII GATC 5 cut(s) 15, 82, 442, 595, 690
NlaIII CATG 1 cut(s) 691
PciSI GCTCTTC 2 cut(s) 17, 528
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 2 cut(s) 103, 695
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 168, 194
PpsI GAGTC 2 cut(s) 168, 194
Psp1406I AACGTT 1 cut(s) 729
PspPI GGNCC 4 cut(s) 245, 324, 374, 684
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 2 cut(s) 59, 388
RsaNI GTAC 2 cut(s) 58, 387
RseI CAYNNNNRTG 1 cut(s) 665
SapI GCTCTTC 2 cut(s) 17, 528
SaqAI TTAA 3 cut(s) 438, 468, 748
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 15, 82, 442, 595, 690
Sau96I GGNCC 4 cut(s) 245, 324, 374, 684
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 2 cut(s) 169, 195
SetI ASST 7 cut(s) 29, 70, 130, 523, 563, 631, 732
SfaNI GCATC 2 cut(s) 223, 556
SfcI CTRYAG 1 cut(s) 721
SinI GGWCC 2 cut(s) 324, 374
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 3 cut(s) 61, 157, 299
SmoI CTYRAG 3 cut(s) 61, 157, 299
Sse9I AATT 1 cut(s) 586
SsiI CCGC 2 cut(s) 38, 223
SspMI CTAG 2 cut(s) 122, 410
TaaI ACNGT 4 cut(s) 76, 270, 395, 419
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 101, 693
TasI AATT 1 cut(s) 586
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 2 cut(s) 103, 695
Tru1I TTAA 3 cut(s) 438, 468, 748
Tru9I TTAA 3 cut(s) 438, 468, 748
TscAI CASTG 1 cut(s) 400
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 302, 487, 522
TspGWI ACGGA 2 cut(s) 149, 404
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 324, 374
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 2 cut(s) 122, 410
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.