Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002115.1

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Forward (+)

139484 .. 140780

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002115.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atggctgaaaagaataagggcaaagttgtgtgctcagatgatgatgatcacagtgatgctgaaggaagcaaaaacacattggatgacttgactctcccgctgcagaaactcaaccttggcccagaaaagaagaagaagaagaagcttctggttattggtcttggaggcttgctttgtcatagagtatatcgcactgaaaatatatacatcccaaatcatcgccgtccggatgcagcatatggaaactacaaggtttacaagaggccttactgtgaaggatttatgaaattttgtctggaaagatttgaagtgggaatatggtcttctgcaagggaatggtacttggacaatgccttggattgtgtgatgaaagggttggggaggaagttgttgtttgcttgggatcaagaggagtgtactgattcagggttcaaaaccttggagaaccaaaagaagcccctctttctgaaagagttgaagaaaatatgggaaaacaagggtttcaaagcctcatcacttccatcttccatggggaaatactcttcattgaacaccttgttaattgatgataaggcttacaaggctctactaaatcctgctcacacagccatctttcctcctgaatacaaggttggccaagttggtgacaaggctttaggtcctaatggtgagttgaggctttacttggagggacttgcagatgctgatgatgttacttcttatgttaaagatcatccatttggacagccagcaataacaactactcactcagattgggatttctattcaaagatccttactcatttccagaaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

272

Amino Acids

30.94

Weight (kDa)

8.35

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	2 cut(s)	411, 787
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	341, 418
AgsI	TTSAA	6 cut(s)	308, 433, 478, 505, 550, 789
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	411, 787
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	3 cut(s)	118, 263, 634
ApeKI	GCWGC	2 cut(s)	100, 233
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	119, 659
AsuHPI	GGTGA	2 cut(s)	656, 680
AvaII	GGWCC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	87, 245
BccI	CCATC	2 cut(s)	529, 617
BceAI	ACGGC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	101, 234
BlsI	GCNGC	2 cut(s)	102, 235
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	119, 659
BmsI	GCATC	3 cut(s)	46, 220, 691
BpiI	GAAGAC	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	115, 354, 438, 528
BsaWI	WCCGGW	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	4 cut(s)	115, 354, 438, 528
BseGI	GGATG	4 cut(s)	88, 207, 235, 733
BseJI	GATNNNNATC	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	48, 783
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	87, 245
BshFI	GGCC	3 cut(s)	120, 265, 636
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	120, 265, 636
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	4 cut(s)	46, 403, 730, 792
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	3 cut(s)	120, 265, 636
BspCNI	CTCAG	2 cut(s)	47, 782
BspEI	TCCGGA	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	105
BspPI	GGATC	2 cut(s)	411, 787
BssECI	CCNNGG	4 cut(s)	115, 354, 438, 528
BssMI	GATC	4 cut(s)	46, 403, 730, 792
BssT1I	CCWWGG	4 cut(s)	115, 354, 438, 528
Bst4CI	ACNGT	2 cut(s)	53, 272
Bst6I	CTCTTC	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	170, 750
BstDEI	CTNAG	2 cut(s)	34, 769
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	88, 207, 235, 733
BstKTI	GATC	4 cut(s)	49, 406, 733, 795
BstMBI	GATC	4 cut(s)	46, 403, 730, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 605
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	87, 245
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	792
BsuRI	GGCC	3 cut(s)	120, 265, 636
BtgI	CCRYGG	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	4 cut(s)	88, 207, 235, 733
BtsIMutI	CAGTG	2 cut(s)	58, 192
Cac8I	GCNNGC	2 cut(s)	170, 750
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	119, 659
Csp6I	GTAC	2 cut(s)	340, 417
CviAII	CATG	1 cut(s)	529
CviQI	GTAC	2 cut(s)	340, 417
DdeI	CTNAG	2 cut(s)	34, 769
DpnI	GATC	4 cut(s)	48, 405, 732, 794
DpnII	GATC	4 cut(s)	46, 403, 730, 792
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco130I	CCWWGG	4 cut(s)	115, 354, 438, 528
Eco147I	AGGCCT	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	659
EcoT14I	CCWWGG	4 cut(s)	115, 354, 438, 528
ErhI	CCWWGG	4 cut(s)	115, 354, 438, 528
FaeI	CATG	1 cut(s)	532
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	1 cut(s)	528
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	101, 234
FokI	GGATG	4 cut(s)	95, 194, 242, 720
Fsp4HI	GCNGC	2 cut(s)	101, 234
GluI	GCNGC	2 cut(s)	101, 234
HaeIII	GGCC	3 cut(s)	120, 265, 636
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	91, 422
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	656, 680
Hpy166II	GTNNAC	2 cut(s)	256, 417
Hpy188I	TCNGA	3 cut(s)	37, 468, 772
Hpy188III	TCNNGA	5 cut(s)	227, 296, 407, 620, 808
Hpy8I	GTNNAC	2 cut(s)	256, 417
HpyAV	CCTTC	2 cut(s)	56, 269
HpyCH4III	ACNGT	2 cut(s)	53, 272
HpyCH4V	TGCA	4 cut(s)	103, 233, 329, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 605
HpyF3I	CTNAG	2 cut(s)	34, 769
Hsp92II	CATG	1 cut(s)	532
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	46, 403, 730, 792
LpnPI	CCDG	8 cut(s)	134, 135, 240, 281, 411, 609, 633, 762
Lsp1109I	GCAGC	2 cut(s)	87, 245
LweI	GCATC	3 cut(s)	46, 220, 691
MaeIII	GTNAC	2 cut(s)	644, 712
MalI	GATC	4 cut(s)	48, 405, 732, 794
MboI	GATC	4 cut(s)	46, 403, 730, 792
MboII	GAAGA	8 cut(s)	142, 145, 148, 151, 315, 490, 516, 534
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	2 cut(s)	287, 561
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	158, 255, 375, 403, 470, 520, 627, 669, 682
Mox20I	TGGCCA	1 cut(s)	636
MroI	TCCGGA	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	3 cut(s)	560, 726, 817
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	581, 605
NcoI	CCATGG	1 cut(s)	528
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	4 cut(s)	46, 403, 730, 792
NlaIII	CATG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	102, 235
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
PspPI	GGNCC	2 cut(s)	119, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	792
RsaI	GTAC	2 cut(s)	341, 418
RsaNI	GTAC	2 cut(s)	340, 417
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	560, 726, 817
SatI	GCNGC	2 cut(s)	101, 234
Sau3AI	GATC	4 cut(s)	46, 403, 730, 792
Sau96I	GGNCC	2 cut(s)	119, 659
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	7 cut(s)	117, 147, 255, 440, 557, 633, 661
SfaNI	GCATC	3 cut(s)	46, 220, 691
SfcI	CTRYAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	287, 561
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	4 cut(s)	115, 354, 438, 528
TaaI	ACNGT	2 cut(s)	53, 272
TasI	AATT	2 cut(s)	287, 561
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	560, 726, 817
Tru9I	TTAA	3 cut(s)	560, 726, 817
TscAI	CASTG	2 cut(s)	58, 199
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	2 cut(s)	100, 233
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	3 cut(s)	299, 383, 534
TspRI	CASTG	2 cut(s)	58, 199
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.