Rh3DG176400

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000875
Physical Location & Seq
Forward (+)
15643128 .. 15645445
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG176400.1

Sequence Viewer

Length: 564 bp
ATGTGGTGCTGTAGAAGATTCCCACGTTGTGTTACATTCTTCTGTGATGATGAACGCCTTTTTTACCTTGGAATCTGTACTCCAGCTGATCTTAACAATGATAACAAAGAAACAGGAAGTGACTCTGGCCTTTCACTAGAGAAGCTAAGTCTCCAACCACGAAAGAAGCTTCTTGTTCTCAGTCTCATTGGGCTTCTACTCTACCTGGTTTACAGGAGAAACAAGGCTAAATTTCCAACTACTCGAGATCCTGATGCCAGATTTGCAAGTCAACTGGTTTTCAAAAGACCTTTTGCTGCAGAGTTTGTGGAATTCTGCCTTGAACGATTTGAAGTGGCAAAGAAAAGTCAAAGGTGTTTTGAATCGTGTAATGGGAAGGAGGCAGAGAAAGAAACTGTCAGTTATATTTGTAGGTTAATTAGAACAGCTTTTTCCTCTGTGAATATAAATTGTTGTAGCAACTTAATTGCAAATTTTTTACTCTATAGGCTCAAGACGATTGCACTTATTCTGGGTCCATGTCCATGGAGGATAAAGAGAAGCCCTTGTTTCTCAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

187

Amino Acids

21.64

Weight (kDa)

9.31

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 230, 311, 472
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 4 cut(s) 283, 323, 332, 362
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 4 cut(s) 86, 145, 169, 428
AluI AGCT 4 cut(s) 86, 145, 169, 428
Alw26I GTCTC 2 cut(s) 155, 188
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 3 cut(s) 230, 311, 472
AspS9I GGNCC 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 515
BbvI GCAGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 155, 188
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 3 cut(s) 10, 297, 484
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 67, 524
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 67, 524
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 155, 188
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 2 cut(s) 88, 247
Bsp19I CCATGG 1 cut(s) 524
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 67, 524
BssMI GATC 2 cut(s) 88, 247
BssT1I CCWWGG 2 cut(s) 67, 524
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 146, 179
BstDSI CCRYGG 1 cut(s) 524
BstKTI GATC 2 cut(s) 91, 250
BstMAI GTCTC 2 cut(s) 155, 188
BstMBI GATC 2 cut(s) 88, 247
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 3 cut(s) 10, 297, 484
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 519, 525
CviJI RGCY 9 cut(s) 86, 129, 145, 169, 193, 227, 428, 490, 543
CviKI_1 RGCY 9 cut(s) 86, 129, 145, 169, 193, 227, 428, 490, 543
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 146, 179
DpnI GATC 2 cut(s) 90, 249
DpnII GATC 2 cut(s) 88, 247
DraIII CACNNNGTG 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 67, 524
Eco47I GGWCC 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 67, 524
ErhI CCWWGG 2 cut(s) 67, 524
FaeI CATG 2 cut(s) 522, 528
FaiI YATR 5 cut(s) 405, 446, 486, 520, 526
FatI CATG 2 cut(s) 518, 524
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 2 cut(s) 522, 528
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 4 cut(s) 18, 72, 122, 362
Hpy166II GTNNAC 2 cut(s) 211, 272
Hpy188III TCNNGA 3 cut(s) 245, 251, 493
Hpy8I GTNNAC 2 cut(s) 211, 272
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 4 cut(s) 266, 299, 470, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 146, 179
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 522, 528
Kzo9I GATC 2 cut(s) 88, 247
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 244
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 31, 119
MalI GATC 2 cut(s) 90, 249
MboI GATC 2 cut(s) 88, 247
MboII GAAGA 2 cut(s) 27, 31
MflI RGATCY 1 cut(s) 247
MluCI AATT 7 cut(s) 230, 311, 417, 448, 465, 472, 559
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 178, 260
MnlI CCTC 3 cut(s) 373, 445, 522
MseI TTAA 3 cut(s) 93, 416, 464
MslI CAYNNNNRTG 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 524
NdeII GATC 2 cut(s) 88, 247
NlaIII CATG 2 cut(s) 522, 528
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 243
PfeI GAWTC 3 cut(s) 18, 72, 362
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 515
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 523
SaqAI TTAA 3 cut(s) 93, 416, 464
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 88, 247
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 206
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 3 cut(s) 10, 297, 484
Sfr274I CTCGAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 515
SlaI CTCGAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 523
SmlI CTYRAG 2 cut(s) 243, 491
SmoI CTYRAG 2 cut(s) 243, 491
Sse9I AATT 7 cut(s) 230, 311, 417, 448, 465, 472, 559
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 67, 524
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 244
TasI AATT 7 cut(s) 230, 311, 417, 448, 465, 472, 559
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 3 cut(s) 18, 72, 362
Tru1I TTAA 3 cut(s) 93, 416, 464
Tru9I TTAA 3 cut(s) 93, 416, 464
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 3 cut(s) 230, 311, 472
XhoI CTCGAG 1 cut(s) 243
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.