Rroxscaffold_5G00383360

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000875
Physical Location & Seq
Reverse (-)
62978620 .. 62979441
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383360.1

Sequence Viewer

Length: 822 bp
ATGGCTGGAGAAATTCCTGTGAAGAAGCTTATTTTGTGTGGTGGTGATGATGATGGCGATGATGACAAATATTACGAAGACACGGGAAGTGAATGTAGCCTTTCTCTAGATCAGCTGACCTTAGAACCCAGAAGAAAGAAGCTTCTTGTTTTTGATCTAAATGGGTTACTAGTCTACAGGGTTTATCGTTCCAACAAGCCTGAATTTCTAAGTGATCGTACGCCTGATGGGAGATTTGGAAACCATCTAGTTTTCAAAAGACCTTTTGCTGAGGAGTTTGTGCAATTCTGCCTTGAAAGATTTGAGATAGGAATATGGTCTTCTGCCCTAGAGAAAAATGTTGATGCTGTCTTAGATTGTATGATGGCAAATCAGAAAAATAGACTATTATTTGTGTGGGGTCAGTCTCAGTGTACATATTCTGGGTTCAAGTCCTTGGAGAAAAGAATGAAGCCACTATTTTTCAAAGAACTGAAGAAAGTGTGGTATCATTTAGACAGAAAGTATTCTGAATGTGATACTTTGTTGATTGATGATCAACCTTACAAGGCCCTACTCAATCCTGCTCACACAGGGATTTTTTTGGAATCCTACAATCCTGACAATGCTAGTGATAATTTATTGGATCCAAATGGACAACTAGGGGTGTATTTGGATGGCCTTGCGGCTGCGACTAATGCTCAGGTTTATGTGAAGGAAAACCCCATTGGAGTGCCTGCAATTTCATCAGACCATCCTGATTGGAATTTCTACTCTGAAGTCCTTCGAGGGATTAAGGGAGAAAGTGAGGAAAAGATTACGCCTCAGCAACAAGCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

273

Amino Acids

31.13

Weight (kDa)

5.01

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 47 - 218 2.3e-21 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AciI CCGC 1 cut(s) 665
AclWI GGATC 2 cut(s) 620, 633
AcsI RAATTY 3 cut(s) 12, 203, 745
AcuI CTGAAG 2 cut(s) 494, 777
AfaI GTAC 2 cut(s) 220, 415
AgsI TTSAA 4 cut(s) 256, 296, 430, 466
AhlI ACTAGT 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AluBI AGCT 3 cut(s) 28, 115, 142
AluI AGCT 3 cut(s) 28, 115, 142
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 2 cut(s) 620, 633
AoxI GGCC 2 cut(s) 549, 658
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 3 cut(s) 12, 203, 745
Asp700I GAANNNNTTC 2 cut(s) 505, 762
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 625
BbsI GAAGAC 2 cut(s) 84, 312
BbvCI CCTCAGC 2 cut(s) 270, 804
BbvI GCAGC 1 cut(s) 655
BccI CCATC 6 cut(s) 47, 221, 252, 358, 650, 741
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 6 cut(s) 107, 170, 248, 329, 609, 641
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 2 cut(s) 666, 669
BlsI GCNGC 2 cut(s) 667, 670
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 1 cut(s) 627
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 2 cut(s) 84, 312
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 3 cut(s) 270, 681, 804
BsaJI CCNNGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 2 cut(s) 661, 733
BseMII CTCAG 4 cut(s) 261, 422, 695, 818
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 655
BshFI GGCC 2 cut(s) 551, 660
BsiWI CGTACG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 411
BsnI GGCC 2 cut(s) 551, 660
Bsp1407I TGTACA 1 cut(s) 413
Bsp143I GATC 5 cut(s) 109, 154, 214, 535, 625
BspACI CCGC 1 cut(s) 665
BspANI GGCC 2 cut(s) 551, 660
BspCNI CTCAG 4 cut(s) 262, 421, 694, 817
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 2 cut(s) 620, 633
BsrGI TGTACA 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 5 cut(s) 109, 154, 214, 535, 625
BssT1I CCWWGG 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 7 cut(s) 121, 209, 270, 352, 408, 681, 804
BstF5I GGATG 2 cut(s) 661, 733
BstKTI GATC 5 cut(s) 112, 157, 217, 538, 628
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 5 cut(s) 109, 154, 214, 535, 625
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 2 cut(s) 84, 312
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 2 cut(s) 551, 660
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 661, 733
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 550
CseI GACGC 1 cut(s) 804
Csp6I GTAC 2 cut(s) 219, 414
CviQI GTAC 2 cut(s) 219, 414
DdeI CTNAG 7 cut(s) 121, 209, 270, 352, 408, 681, 804
DpnI GATC 5 cut(s) 111, 156, 216, 537, 627
DpnII GATC 5 cut(s) 109, 154, 214, 535, 625
Eco130I CCWWGG 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 494, 777
EcoO109I RGGNCCY 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaiI YATR 4 cut(s) 316, 362, 418, 690
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 666, 669
FokI GGATG 2 cut(s) 668, 720
Fsp4HI GCNGC 2 cut(s) 666, 669
FspBI CTAG 6 cut(s) 107, 170, 248, 329, 609, 641
GluI GCNGC 2 cut(s) 666, 669
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 551, 660
HgaI GACGC 1 cut(s) 804
HindIII AAGCTT 2 cut(s) 26, 140
HinfI GANTC 1 cut(s) 587
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 175, 414
Hpy188I TCNGA 4 cut(s) 375, 511, 730, 757
Hpy188III TCNNGA 4 cut(s) 107, 599, 737, 819
Hpy8I GTNNAC 2 cut(s) 175, 414
HpyAV CCTTC 2 cut(s) 688, 773
HpyCH4V TGCA 2 cut(s) 283, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 7 cut(s) 121, 209, 270, 352, 408, 681, 804
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 109, 154, 214, 535, 625
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 1 cut(s) 334
MaeI CTAG 6 cut(s) 107, 170, 248, 329, 609, 641
MaeIII GTNAC 1 cut(s) 165
MalI GATC 5 cut(s) 111, 156, 216, 537, 627
MboI GATC 5 cut(s) 109, 154, 214, 535, 625
MboII GAAGA 5 cut(s) 34, 89, 144, 312, 487
MflI RGATCY 1 cut(s) 625
MluCI AATT 6 cut(s) 12, 203, 284, 616, 720, 745
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 265, 761, 781, 813
MroXI GAANNNNTTC 2 cut(s) 505, 762
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 710
MspA1I CMGCKG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeII GATC 5 cut(s) 109, 154, 214, 535, 625
NlaIV GGNNCC 1 cut(s) 627
PdmI GAANNNNTTC 2 cut(s) 505, 762
PfeI GAWTC 1 cut(s) 587
Pfl23II CGTACG 1 cut(s) 218
PkrI GCNGC 2 cut(s) 667, 670
PspLI CGTACG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 550
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 2 cut(s) 220, 415
RsaNI GTAC 2 cut(s) 219, 414
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 2 cut(s) 666, 669
Sau3AI GATC 5 cut(s) 109, 154, 214, 535, 625
Sau96I GGNCC 1 cut(s) 550
SetI ASST 7 cut(s) 30, 117, 122, 144, 265, 544, 687
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 710
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 6 cut(s) 12, 203, 284, 616, 720, 745
SsiI CCGC 1 cut(s) 665
SspI AATATT 1 cut(s) 71
SspMI CTAG 6 cut(s) 107, 170, 248, 329, 609, 641
StyI CCWWGG 1 cut(s) 435
TaqI TCGA 1 cut(s) 766
TasI AATT 6 cut(s) 12, 203, 284, 616, 720, 745
TatI WGTACW 1 cut(s) 413
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 1 cut(s) 416
TseI GCWGC 1 cut(s) 668
TspDTI ATGAA 2 cut(s) 464, 714
TspRI CASTG 1 cut(s) 416
XapI RAATTY 3 cut(s) 12, 203, 745
XbaI TCTAGA 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 2 cut(s) 505, 762
XspI CTAG 6 cut(s) 107, 170, 248, 329, 609, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.