Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

17572745 .. 17580221

Gene Structure 7477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGATGATGATGCATGGTGACTATGATAGTGTTTCCTGTCGCAGTGATGGCAATGACTGCGATAACGAAGACACTGGAAGCCATTGTGGCCTTTCACTACAGAAGCTGAATTTAGGACCAAGAAAGAAGCTTCTTGTTTTCAATCTCCATGGGTGTTTAATCAACAGGGTTTACCGGCACGACAGTCAGGCCAGAATTCCAAGTGATCGTAGTCCTGATGGCAGATATGGAAATCATCTAGAACAACAAGGGCATCCTGGATGGGGATCATATGCACAGCGATTGTTGGACCCTGCTTCTGGGCTTTGGAGAAACCCTAGTATTGGTGGACATGATGACAAGGCCCATCCACCTATTCACCCAACCAAATTTTCTTCTGGAGAATCAGGATGGAGTCAAGATCACAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

6.53

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	112, 198, 371
AdeI	CACNNNGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	266, 302, 326
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	2 cut(s)	109, 133
AluI	AGCT	2 cut(s)	109, 133
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	91, 192, 345
ApoI	RAATTY	3 cut(s)	112, 198, 371
AspS9I	GGNCC	3 cut(s)	119, 292, 346
AsuHPI	GGTGA	2 cut(s)	32, 353
AvaII	GGWCC	2 cut(s)	119, 292
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	5 cut(s)	44, 215, 258, 357, 387
BciT130I	CCWGG	1 cut(s)	261
BfaI	CTAG	2 cut(s)	242, 321
BfmI	CTRYAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	119, 292
BmgT120I	GGNCC	3 cut(s)	119, 292, 346
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	3, 265
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 302, 326
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	5 cut(s)	12, 256, 269, 349, 398
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	266, 302, 326
BseMI	GCAATG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	93, 194, 347
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	266, 302, 326
BsnI	GGCC	3 cut(s)	93, 194, 347
Bsp143I	GATC	3 cut(s)	208, 269, 403
Bsp19I	CCATGG	1 cut(s)	151
BspANI	GGCC	3 cut(s)	93, 194, 347
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	3 cut(s)	208, 269, 403
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	5 cut(s)	12, 256, 269, 349, 398
BstKTI	GATC	3 cut(s)	211, 272, 406
BstMBI	GATC	3 cut(s)	208, 269, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 60, 90
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	93, 194, 347
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	12, 256, 269, 349, 398
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 75
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	119, 292, 346
CviAII	CATG	3 cut(s)	17, 152, 335
CviJI	RGCY	7 cut(s)	84, 93, 109, 133, 194, 307, 347
CviKI_1	RGCY	7 cut(s)	84, 93, 109, 133, 194, 307, 347
DpnI	GATC	3 cut(s)	210, 271, 405
DpnII	GATC	3 cut(s)	208, 269, 403
DraIII	CACNNNGTG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	119, 292
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	20, 155, 338
FaiI	YATR	7 cut(s)	18, 27, 153, 231, 274, 276, 336
FatI	CATG	3 cut(s)	16, 151, 334
FauNDI	CATATG	1 cut(s)	274
FokI	GGATG	5 cut(s)	19, 243, 276, 336, 405
FspBI	CTAG	2 cut(s)	242, 321
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	93, 194, 347
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	3 cut(s)	20, 155, 338
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	386, 397
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	32, 353
Hpy166II	GTNNAC	2 cut(s)	175, 332
Hpy188III	TCNNGA	5 cut(s)	218, 242, 381, 390, 401
Hpy8I	GTNNAC	2 cut(s)	175, 332
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	16, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 60, 90
Hsp92II	CATG	3 cut(s)	20, 155, 338
Kzo9I	GATC	3 cut(s)	208, 269, 403
LweI	GCATC	2 cut(s)	3, 265
MaeI	CTAG	2 cut(s)	242, 321
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	210, 271, 405
MboI	GATC	3 cut(s)	208, 269, 403
MboII	GAAGA	2 cut(s)	83, 369
MluCI	AATT	3 cut(s)	112, 198, 371
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	1 cut(s)	161
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	3 cut(s)	51, 60, 90
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	3 cut(s)	208, 269, 403
NlaIII	CATG	3 cut(s)	20, 155, 338
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	259
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	119, 292, 346
PstNI	CAGNNNCTG	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	3 cut(s)	208, 269, 403
Sau96I	GGNCC	3 cut(s)	119, 292, 346
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	3 cut(s)	111, 135, 358
SfaNI	GCATC	2 cut(s)	3, 265
SfcI	CTRYAG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	119, 292
Sse9I	AATT	3 cut(s)	112, 198, 371
SspMI	CTAG	2 cut(s)	242, 321
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	3 cut(s)	112, 198, 371
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	52, 82
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspRI	CASTG	2 cut(s)	52, 82
VpaK11BI	GGWCC	2 cut(s)	119, 292
XapI	RAATTY	3 cut(s)	112, 198, 371
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	2 cut(s)	242, 321
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.