pycom14g01190

catalytic domain of ctd-like phosphatases

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
834398 .. 835815
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g01190.1

Sequence Viewer

Length: 624 bp
ATGCAATTTTGTTTTGAAAGATTTGAAGTTGGAATATGGAGTTCTGCCCAAGAAAAAAATGTGGATGGTGTTTTGGATTGTGTAATGGGAAAGCTGAGAAGACGACTGTCATTTGTTTGGGATCAACATGAATGTACTGACTCCGGGTTGAAGTCGCTACAGAATAAAAACAAGCCTCTATTTTTCAAAGAACTTGACAAAGTGTGGAGCTATATTTGCGGGAATTATTCAGAATCTGATACACTTTTCATTGATCGATCAACCATACAAGGCTCTATTGAATCCTGTATGGTCATCACAACTCTGCCTTTCTCCCGTTTTCTCCCTCTGCACTCCATTTTTTTCCTAGGTTTTGGATTGAATTTTGATGGAGAATCAAATGACAGAAATGGAAGGAGTGCAGAAGGGGAAAATGAGAGTCCGATTTTTCTTTTTCTTGGACTGTTGGAAATAGATCCAAAGGGAGAACTTGGGAAGTATTTAGATGGCCTTGCAGATGCAAAAGATGTGCAAATTTATGTGAAGGGAAACCCTTTTGGAATGCCTGCAATTTCACCTACTCATCCGGATTGGAAATTCTACTCGAATGTTCTTCGTAGACTCGGAAAGATGTACAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

23.69

Weight (kDa)

5.96

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 598
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 129, 449
AcsI RAATTY 3 cut(s) 361, 513, 575
AfaI GTAC 2 cut(s) 136, 614
AgsI TTSAA 6 cut(s) 17, 26, 151, 187, 281, 361
AluBI AGCT 2 cut(s) 94, 210
AluI AGCT 2 cut(s) 94, 210
AlwI GGATC 2 cut(s) 129, 449
AlwNI CAGNNNCTG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 1 cut(s) 487
ApoI RAATTY 3 cut(s) 361, 513, 575
AspA2I CCTAGG 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 546
AvrII CCTAGG 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 106
BccI CCATC 3 cut(s) 59, 362, 479
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 158
BlnI CCTAGG 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 487
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 145
Bsa29I ATCGAT 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 565
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 2 cut(s) 70, 562
BseMII CTCAG 1 cut(s) 86
BsgI GTGCAG 2 cut(s) 314, 420
BshFI GGCC 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 256
BsiSI CCGG 2 cut(s) 144, 566
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 489
Bsp13I TCCGGA 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 4 cut(s) 121, 253, 257, 454
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 565
BspPI GGATC 2 cut(s) 129, 449
BsrGI TGTACA 1 cut(s) 612
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 4 cut(s) 121, 253, 257, 454
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 108, 444
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 2 cut(s) 70, 562
BstKTI GATC 4 cut(s) 124, 256, 260, 457
BstMBI GATC 4 cut(s) 121, 253, 257, 454
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 256
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 256
BtsCI GGATG 2 cut(s) 70, 562
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 256
Csp6I GTAC 2 cut(s) 135, 613
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 94, 175, 210, 273, 489
CviKI_1 RGCY 5 cut(s) 94, 175, 210, 273, 489
CviQI GTAC 2 cut(s) 135, 613
DdeI CTNAG 1 cut(s) 95
DpnI GATC 4 cut(s) 123, 255, 259, 456
DpnII GATC 4 cut(s) 121, 253, 257, 454
Eco130I CCWWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 1 cut(s) 131
FaiI YATR 6 cut(s) 37, 129, 213, 266, 290, 519
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 212
FblI GTMKAC 1 cut(s) 598
FokI GGATG 2 cut(s) 77, 549
FspBI CTAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 144, 566
Hin1II CATG 1 cut(s) 131
HinfI GANTC 6 cut(s) 140, 233, 281, 374, 418, 600
HpaII CCGG 2 cut(s) 144, 566
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 4 cut(s) 232, 238, 423, 605
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 1 cut(s) 599
HpyAV CCTTC 3 cut(s) 387, 398, 517
HpyCH4III ACNGT 2 cut(s) 108, 444
HpyCH4V TGCA 7 cut(s) 4, 331, 401, 494, 500, 511, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 565
Kzo9I GATC 4 cut(s) 121, 253, 257, 454
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 4 cut(s) 157, 298, 558, 579
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 347
MalI GATC 4 cut(s) 123, 255, 259, 456
MboI GATC 4 cut(s) 121, 253, 257, 454
MboII GAAGA 2 cut(s) 111, 584
MflI RGATCY 1 cut(s) 454
MluCI AATT 6 cut(s) 5, 223, 361, 513, 549, 575
MlyI GAGTC 3 cut(s) 134, 427, 594
MmeI TCCRAC 2 cut(s) 10, 426
MnlI CCTC 2 cut(s) 186, 336
MroI TCCGGA 1 cut(s) 565
MspI CCGG 2 cut(s) 144, 566
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 216
NciI CCSGG 1 cut(s) 145
NdeII GATC 4 cut(s) 121, 253, 257, 454
NlaIII CATG 1 cut(s) 131
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 233, 281, 374
PleI GAGTC 3 cut(s) 134, 426, 594
PpsI GAGTC 3 cut(s) 134, 426, 594
PshAI GACNNNNGTC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 2 cut(s) 136, 614
RsaNI GTAC 2 cut(s) 135, 613
Sau3AI GATC 4 cut(s) 121, 253, 257, 454
SchI GAGTC 3 cut(s) 134, 427, 594
ScrFI CCNGG 1 cut(s) 145
SetI ASST 4 cut(s) 96, 212, 352, 559
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 158
Sse9I AATT 6 cut(s) 5, 223, 361, 513, 549, 575
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 108, 444
TaqI TCGA 2 cut(s) 256, 584
TasI AATT 6 cut(s) 5, 223, 361, 513, 549, 575
TatI WGTACW 2 cut(s) 134, 612
TfiI GAWTC 3 cut(s) 233, 281, 374
TspDTI ATGAA 2 cut(s) 144, 238
XapI RAATTY 3 cut(s) 361, 513, 575
XmaJI CCTAGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.