Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

16642191 .. 16645791

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG188800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCTCGAAAGAACCACATCAAGAAACACCATCCTTTGTATGATTATGAAAGTTCTTATTTCTTTGACACTGACAGTGATTATGAATTCTGTGACAGTGGTGATGAACGCCTTTTTTACCTTGGAATCTGTACTCCAGCTGATCTTAACAATGATAACAAAGAAACAGGAAGTGACTCTGGCCTTTCACTAGAGAAGCTAAGTCTCCAACCACGAAAGAAGCTTCTTGTTCTCAGTCTCATTGGGCTTCTACTCTACCTGGTTTACAGGAAAAACAAGGCTAAATTTCCAACTACTCGAGATCCTGATGCCAGATTTTCAAGTCAACTGGTTTTCAAAAGACCTTTTGCTGCAGAGTTTGTGGAATTCTGCCTTGAACGATTTGAAGTGGCAGTATGGTCTTGTGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

137

Amino Acids

15.95

Weight (kDa)

6.29

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	3 cut(s)	86, 284, 365
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	321, 337, 377, 386
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	140, 199, 223
AluI	AGCT	3 cut(s)	140, 199, 223
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	209, 242
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	86, 284, 365
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	209, 242
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	209, 242
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	142, 301
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	142, 301
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	77, 98
BstDEI	CTNAG	2 cut(s)	200, 233
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	145, 304
BstMAI	GTCTC	2 cut(s)	209, 242
BstMBI	GATC	2 cut(s)	142, 301
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	69, 82, 103
CsiI	ACCWGGT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	132
CviJI	RGCY	6 cut(s)	140, 183, 199, 223, 247, 281
CviKI_1	RGCY	6 cut(s)	140, 183, 199, 223, 247, 281
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	200, 233
DpnI	GATC	2 cut(s)	144, 303
DpnII	GATC	2 cut(s)	142, 301
Eco130I	CCWWGG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	2 cut(s)	86, 365
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaiI	YATR	4 cut(s)	42, 48, 84, 397
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	126, 176
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	265, 326
Hpy188III	TCNNGA	3 cut(s)	22, 299, 305
Hpy8I	GTNNAC	2 cut(s)	265, 326
HpyCH4III	ACNGT	2 cut(s)	77, 98
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	200, 233
Kzo9I	GATC	2 cut(s)	142, 301
LpnPI	CCDG	9 cut(s)	150, 153, 165, 245, 253, 272, 314, 318, 325
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	258
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	92, 173
MalI	GATC	2 cut(s)	144, 303
MboI	GATC	2 cut(s)	142, 301
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	3 cut(s)	86, 284, 365
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	232, 314
MnlI	CCTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	142, 301
NmuCI	GTSAC	2 cut(s)	92, 173
PaeR7I	CTCGAG	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	142, 301
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	6 cut(s)	123, 142, 201, 225, 261, 346
SexAI	ACCWGGT	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	86, 284, 365
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	77, 98
TaqI	TCGA	2 cut(s)	7, 298
TasI	AATT	3 cut(s)	86, 284, 365
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	76, 82, 103
TseFI	GTSAC	2 cut(s)	92, 173
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	2 cut(s)	92, 173
TspDTI	ATGAA	3 cut(s)	63, 99, 120
TspRI	CASTG	3 cut(s)	76, 82, 103
XapI	RAATTY	3 cut(s)	86, 284, 365
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.