Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

31601322 .. 31602547

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATGACTTGACTCTCCCTCTAGAGAAACTCAACCTTGGCCCAGAAAAGAAGAAGAAGAAGCTTCTTGTTATTGGTCTTGGAGGCTTGCTTTGTCATAGAGTATACCGCACTCAAAATATCTACATCCCAAATTATCGCCGTCCGGATGCAGCATATGGAAACTACAAGGTTTACAAGAGGCCTTACTGTGAAGAATTTATGAAATTTTGTCTGGAAAGATTTGAAGTGGGAATATGGTCTTCTGCAAGGGAATGGTGCTTGGACAATGCCTTGGATTGTGTGATGAAAGGGTTGGGGAGGAAGTCGTTGTTTGCTTGGGATCAAGTGGAGTGTACTGATTCAGGGTTCAAAACCTTGGAGAACCAAAAGAAGCCCATCTTTCTGAAAGAGTTGAAGAAAATATGGGAAGACAAGGGTTTCAAAGCTTCACTTCCATCTTCCATGGGGAAATACTCTTCATTGAACACCTTGTTAATTGATGATAAGGCTTACAAGGCCCTACTAAATCCCGCTCACACAGCCATCTTTCCTCCTGAATACAAGGTTGACCAAATTGATGACAAGGCTTTAGGTCCTAATGGTGAGTTAAGGCTTTACTTGGAAGGACTTGCAGATGCCGATGATGTTACTTCTTATGTTAAAGATCATCCATTTGGACAGCCAGCAATAACAACTACTCACTCTGATTGGGATTTCTATTCAAAGATCCTTACTCATTTCCAGAAAGATTTCCAGAAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

248

Amino Acids

28.61

Weight (kDa)

8.08

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	21 - 210	1.6e-15	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	109, 513
AclWI	GGATC	2 cut(s)	330, 703
AcsI	RAATTY	2 cut(s)	197, 206
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	6 cut(s)	227, 352, 397, 424, 466, 705
AluBI	AGCT	2 cut(s)	64, 428
AluI	AGCT	2 cut(s)	64, 428
AlwI	GGATC	2 cut(s)	330, 703
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	3 cut(s)	40, 182, 498
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	197, 206
Asp700I	GAANNNNTTC	1 cut(s)	731
AspS9I	GGNCC	3 cut(s)	41, 499, 575
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	575
BbsI	GAAGAC	2 cut(s)	234, 417
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	3 cut(s)	386, 445, 533
BceAI	ACGGC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	41, 499, 575
BmsI	GCATC	2 cut(s)	139, 607
BpiI	GAAGAC	2 cut(s)	234, 417
BsaJI	CCNNGG	4 cut(s)	37, 273, 357, 444
BsaWI	WCCGGW	1 cut(s)	145
BseAI	TCCGGA	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	37, 273, 357, 444
BseGI	GGATG	4 cut(s)	10, 126, 154, 649
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	42, 184, 500
BsiSI	CCGG	1 cut(s)	146
BsnI	GGCC	3 cut(s)	42, 184, 500
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	322, 646, 708
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	109, 513
BspANI	GGCC	3 cut(s)	42, 184, 500
BspEI	TCCGGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	330, 703
BsrBI	CCGCTC	1 cut(s)	515
BssECI	CCNNGG	4 cut(s)	37, 273, 357, 444
BssMI	GATC	3 cut(s)	322, 646, 708
BssNAI	GTATAC	1 cut(s)	106
BssT1I	CCWWGG	4 cut(s)	37, 273, 357, 444
Bst1107I	GTATAC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	89, 666
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	10, 126, 154, 649
BstKTI	GATC	3 cut(s)	325, 649, 711
BstMBI	GATC	3 cut(s)	322, 646, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 521
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	2 cut(s)	234, 417
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BstZ17I	GTATAC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	42, 184, 500
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	4 cut(s)	10, 126, 154, 649
Cac8I	GCNNGC	2 cut(s)	89, 666
Cfr13I	GGNCC	3 cut(s)	41, 499, 575
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	445
CviQI	GTAC	1 cut(s)	336
DpnI	GATC	3 cut(s)	324, 648, 710
DpnII	GATC	3 cut(s)	322, 646, 708
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco130I	CCWWGG	4 cut(s)	37, 273, 357, 444
Eco147I	AGGCCT	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	575
EcoO109I	RGGNCCY	2 cut(s)	499, 575
EcoT14I	CCWWGG	4 cut(s)	37, 273, 357, 444
ErhI	CCWWGG	4 cut(s)	37, 273, 357, 444
FaeI	CATG	1 cut(s)	448
FaiI	YATR	9 cut(s)	99, 106, 157, 159, 203, 238, 406, 446, 639
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 417, 449
FatI	CATG	1 cut(s)	444
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	4 cut(s)	17, 113, 161, 636
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	42, 184, 500
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	2 cut(s)	62, 426
HinfI	GANTC	2 cut(s)	13, 341
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	4 cut(s)	106, 175, 336, 550
Hpy188I	TCNGA	2 cut(s)	387, 688
Hpy188III	TCNNGA	6 cut(s)	23, 146, 215, 536, 724, 736
Hpy8I	GTNNAC	4 cut(s)	106, 175, 336, 550
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	152, 248, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 521
Hsp92II	CATG	1 cut(s)	448
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	322, 646, 708
LpnPI	CCDG	7 cut(s)	57, 159, 200, 330, 549, 678, 737
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	139, 607
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	3 cut(s)	324, 648, 710
MbiI	CCGCTC	1 cut(s)	515
MboI	GATC	3 cut(s)	322, 646, 708
MboII	GAAGA	9 cut(s)	64, 67, 70, 206, 234, 409, 422, 432, 450
MflI	RGATCY	1 cut(s)	708
MluCI	AATT	5 cut(s)	133, 197, 206, 477, 555
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	30, 77, 174, 294, 543
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	4 cut(s)	476, 590, 642, 745
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	497, 521
NcoI	CCATGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	322, 646, 708
NlaIII	CATG	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
PspPI	GGNCC	3 cut(s)	41, 499, 575
PspPPI	RGGWCCY	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	708
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	476, 590, 642, 745
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	3 cut(s)	322, 646, 708
Sau96I	GGNCC	3 cut(s)	41, 499, 575
SchI	GAGTC	1 cut(s)	7
SetI	ASST	8 cut(s)	39, 66, 174, 359, 430, 473, 549, 577
SfaNI	GCATC	2 cut(s)	139, 607
SinI	GGWCC	1 cut(s)	575
Sse9I	AATT	5 cut(s)	133, 197, 206, 477, 555
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	109, 513
SspMI	CTAG	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	184
StyI	CCWWGG	4 cut(s)	37, 273, 357, 444
TaaI	ACNGT	1 cut(s)	191
TasI	AATT	5 cut(s)	133, 197, 206, 477, 555
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	4 cut(s)	476, 590, 642, 745
Tru9I	TTAA	4 cut(s)	476, 590, 642, 745
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	218, 302, 450
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	2 cut(s)	197, 206
XbaI	TCTAGA	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.