Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

1249404 .. 1252090

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1014100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTGATGAAAGGATCTGTAAAAACAAGCATCAATATGACAGCGATGACGGCGACGATGATGGCAACGAAGACACCGGAAGCGATTGCGGCCTTTCTCTGGAGAAGCTAAACATAGGATCAAGGAAGAAGCTTGTAATCTTTAGCCTCAATGGCTTGATCGTCCACAGAGTTTCCCTCCACAACGGGACAAAAATTCCGAGCAATCGTACTCCTGATGGCACATATGGAAGCTATCTAGTTTTTAAGAGACCATTTTGTGAGGAATTCATGCAATTTTGTTTCGAAAGATTTGAAGTTGGAATATGGAGTTCTGCCCAAGAAAAAAATGTGGATAGTGTTTTGGATTGTGTAATGGGAAAGCTGAGAAGACGACTGTCATTTGTTTGGGATCAACATGAATGTACTGACTCTGGGTTGAAGTCGCTAGAGAATAAACACAAGCCTCTATTTTTCAAAGAACTGGACAAAGTGTGGAGCCATTTTAGCGGGAAGTATTCAGAATCTGATACACTTTCCATTGATGATAAACCTTACAAGGCCCTATTGAATCCTCCTAACACAGGTATCTTCTTGGAGTCATATGATGCTGAGAATGACAACGACAAAGACTTAGATCCAAAGGGGGAACTTGGGAAGTATTTGGATGGCCTTGCAGATGCAAAAGATGTGCAAATTTATGTGAAGGGAAGCCCTTTTGGAATGCCTGCAATTTCACCTACTCATCCGGATTGGAAATTCTACTCGAATGTTCTTCGTAGACTCGGAAAGCGGTACAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

262

Amino Acids

29.83

Weight (kDa)

6.01

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	44 - 225	1.9e-22	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	3 cut(s)	90, 489, 772
AclWI	GGATC	4 cut(s)	23, 127, 399, 611
AcsI	RAATTY	4 cut(s)	195, 266, 675, 737
AfaI	GTAC	3 cut(s)	211, 406, 776
AfiI	CCNNNNNNNGG	2 cut(s)	100, 563
AgsI	TTSAA	4 cut(s)	296, 421, 457, 550
AluBI	AGCT	4 cut(s)	109, 133, 234, 364
AluI	AGCT	4 cut(s)	109, 133, 234, 364
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	4 cut(s)	23, 127, 399, 611
AlwNI	CAGNNNCTG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	3 cut(s)	91, 540, 649
ApoI	RAATTY	4 cut(s)	195, 266, 675, 737
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	708
AsuII	TTCGAA	1 cut(s)	285
BaeI	ACNNNNGTAYC	3 cut(s)	550, 583, 766
BbsI	GAAGAC	2 cut(s)	78, 376
BccI	CCATC	3 cut(s)	56, 212, 641
BceAI	ACGGC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	239, 428
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	479
BmsI	GCATC	3 cut(s)	40, 577, 649
BoxI	GACNNNNGTC	1 cut(s)	376
BpiI	GAAGAC	2 cut(s)	78, 376
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	77, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 563
Bse1I	ACTGG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	727
BseGI	GGATG	2 cut(s)	652, 724
BseLI	CCNNNNNNNGG	2 cut(s)	100, 563
BseMII	CTCAG	2 cut(s)	356, 582
BseNI	ACTGG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	93, 542, 651
BsiSI	CCGG	2 cut(s)	78, 728
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	100, 563
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	93, 542, 651
Bso31I	GGTCTC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	15, 119, 159, 391, 616
BspACI	CCGC	3 cut(s)	90, 489, 772
BspANI	GGCC	3 cut(s)	93, 542, 651
BspCNI	CTCAG	2 cut(s)	357, 583
BspEI	TCCGGA	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	23, 127, 399, 611
BspT104I	TTCGAA	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	15, 119, 159, 391, 616
Bst4CI	ACNGT	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	3 cut(s)	365, 591, 613
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	652, 724
BstKTI	GATC	5 cut(s)	18, 122, 162, 394, 619
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	5 cut(s)	15, 119, 159, 391, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 90, 153, 486, 778
BstPAI	GACNNNNGTC	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	78, 376
BstX2I	RGATCY	2 cut(s)	15, 616
BstYI	RGATCY	2 cut(s)	15, 616
BsuRI	GGCC	3 cut(s)	93, 542, 651
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	652, 724
Cac8I	GCNNGC	1 cut(s)	708
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	210, 405, 775
CviAII	CATG	2 cut(s)	271, 398
CviQI	GTAC	3 cut(s)	210, 405, 775
DdeI	CTNAG	3 cut(s)	365, 591, 613
DpnI	GATC	5 cut(s)	17, 121, 161, 393, 618
DpnII	GATC	5 cut(s)	15, 119, 159, 391, 616
Eco31I	GGTCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	266
FaeI	CATG	2 cut(s)	274, 401
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	270, 397
FauI	CCCGC	1 cut(s)	482
FauNDI	CATATG	2 cut(s)	226, 583
FblI	GTMKAC	1 cut(s)	760
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	2 cut(s)	659, 711
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	239, 428
GluI	GCNGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	93, 542, 651
HapII	CCGG	2 cut(s)	78, 728
Hin1II	CATG	2 cut(s)	274, 401
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	5 cut(s)	410, 503, 550, 578, 762
HpaII	CCGG	2 cut(s)	78, 728
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	2 cut(s)	166, 761
Hpy188I	TCNGA	4 cut(s)	201, 502, 508, 767
Hpy188III	TCNNGA	3 cut(s)	101, 215, 728
Hpy8I	GTNNAC	2 cut(s)	166, 761
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	274, 656, 662, 673, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 90, 153, 486, 778
HpyF3I	CTNAG	3 cut(s)	365, 591, 613
Hsp92II	CATG	2 cut(s)	274, 401
Kpn2I	TCCGGA	1 cut(s)	727
Kzo9I	GATC	5 cut(s)	15, 119, 159, 391, 616
LmnI	GCTCC	1 cut(s)	477
LpnPI	CCDG	8 cut(s)	86, 91, 228, 399, 449, 549, 720, 741
LweI	GCATC	3 cut(s)	40, 577, 649
MaeI	CTAG	2 cut(s)	239, 428
MalI	GATC	5 cut(s)	17, 121, 161, 393, 618
MboI	GATC	5 cut(s)	15, 119, 159, 391, 616
MboII	GAAGA	5 cut(s)	83, 139, 381, 562, 746
MflI	RGATCY	2 cut(s)	15, 616
MluCI	AATT	6 cut(s)	195, 266, 275, 675, 711, 737
MlyI	GAGTC	3 cut(s)	404, 587, 756
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	5 cut(s)	158, 188, 256, 456, 564
MroI	TCCGGA	1 cut(s)	727
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	2 cut(s)	78, 728
Mva1269I	GAATGC	1 cut(s)	708
MwoI	GCNNNNNNNGC	5 cut(s)	51, 90, 153, 486, 778
NdeI	CATATG	2 cut(s)	226, 583
NdeII	GATC	5 cut(s)	15, 119, 159, 391, 616
NlaIII	CATG	2 cut(s)	274, 401
NlaIV	GGNNCC	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	285
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	503, 550
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	3 cut(s)	404, 586, 756
PpsI	GAGTC	3 cut(s)	404, 586, 756
PshAI	GACNNNNGTC	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	15, 616
RsaI	GTAC	3 cut(s)	211, 406, 776
RsaNI	GTAC	3 cut(s)	210, 405, 775
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	5 cut(s)	15, 119, 159, 391, 616
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	3 cut(s)	404, 587, 756
SetI	ASST	7 cut(s)	111, 135, 236, 366, 535, 568, 721
SfaNI	GCATC	3 cut(s)	40, 577, 649
SfuI	TTCGAA	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	6 cut(s)	195, 266, 275, 675, 711, 737
SsiI	CCGC	3 cut(s)	90, 489, 772
SspMI	CTAG	2 cut(s)	239, 428
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	285, 746
TasI	AATT	6 cut(s)	195, 266, 275, 675, 711, 737
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	503, 550
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	24, 259, 414
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	4 cut(s)	195, 266, 675, 737
XmiI	GTMKAC	1 cut(s)	760
XspI	CTAG	2 cut(s)	239, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.