Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

64069297 .. 64070118

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTGGAGAAATTCCTGTGAAGAAGTTTATTTTGTGTGGTGGTGATGATGATGGCGATGATGACAAATATTACGAAGACATGGGAAGTGAATGTTGCCTTTCACTAGATCAGCTGACTTTAGAACCCAGAAGAAAGAAGCTTCTTGTTTTTGATCTGAATGGGTTACTAGTCTACAGGGTTTATTGTTCCAACAAGCCAGAATTTCCAAGTGATCGTACACCGGATGGGAGATTTGGAAACCATCTAGTTTTCAAAAGACCTTTTGCTGAGGAGTTTGTGCAATTTTGCCTTGAAAGATTTGAGATCGGAATATGGTCTTCTGCCGTAGAGAAAAACGTTGATGCTGTCTTAGATTGTATGATGGCAAATCAGAGAAATAGACTATTATTTGTGTGGGGTCAATCTCAATGTACAGATTCTGGGTTCAAGTCCTTGGAGAAAAGAATGAAGCCTCTATTTTTCAAAGAACTGAAGAAAGTGTGGTATCATTTCGGCAGAAAGTATTCTGAATGTGATACTTTGTTGATTGATGATCAACCATACAAGGCCCTACTCAATCCTGCTCACACAGGGATTTTTTTGGAATCCTACAATCCTGACAATGCTAGTGATAATTTATTGGATCCAAATGGACAGCTAGGGGTGTATTTGGATGGCCTTGCGGCTGCGACTAATGCTCAGGTTTATGTGAAGGAGAACCCTATTGGAGTGCCTGCAATTTCATCAGATCATCCTGATTGGAATTTCTACTCTGAAGTCCTTCGAGGGATTAAGGGAGAAAGTGAGGAAAAGATTACGCCTCAGCAACAAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

273

Amino Acids

31.14

Weight (kDa)

4.89

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	47 - 218	1.7e-20	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	665
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	2 cut(s)	620, 633
AcsI	RAATTY	3 cut(s)	12, 203, 745
AcuI	CTGAAG	2 cut(s)	494, 777
AfaI	GTAC	2 cut(s)	220, 415
AgsI	TTSAA	4 cut(s)	256, 296, 430, 466
AhlI	ACTAGT	1 cut(s)	169
AluBI	AGCT	3 cut(s)	115, 142, 640
AluI	AGCT	3 cut(s)	115, 142, 640
AlwI	GGATC	2 cut(s)	620, 633
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	549, 658
ApeKI	GCWGC	1 cut(s)	668
ApoI	RAATTY	3 cut(s)	12, 203, 745
Asp700I	GAANNNNTTC	2 cut(s)	505, 762
AspS9I	GGNCC	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	84, 312
BbvCI	CCTCAGC	2 cut(s)	270, 804
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	5 cut(s)	47, 221, 252, 358, 650
BceAI	ACGGC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	535
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	5 cut(s)	107, 170, 248, 609, 641
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	2 cut(s)	666, 669
BlsI	GCNGC	2 cut(s)	667, 670
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	627
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	84, 312
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	3 cut(s)	270, 681, 804
BsaJI	CCNNGG	1 cut(s)	435
BsaWI	WCCGGW	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	3 cut(s)	232, 661, 733
BseMII	CTCAG	3 cut(s)	261, 695, 818
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	655
BshFI	GGCC	2 cut(s)	551, 660
BsiSI	CCGG	1 cut(s)	224
BsnI	GGCC	2 cut(s)	551, 660
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	2 cut(s)	551, 660
BspCNI	CTCAG	3 cut(s)	262, 694, 817
BspLI	GGNNCC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	620, 633
BsrGI	TGTACA	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
BssT1I	CCWWGG	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	4 cut(s)	270, 352, 681, 804
BstF5I	GGATG	3 cut(s)	232, 661, 733
BstKTI	GATC	7 cut(s)	112, 157, 217, 309, 538, 628, 733
BstMBI	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	655
BstV2I	GAAGAC	2 cut(s)	84, 312
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	551, 660
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	232, 661, 733
Cac8I	GCNNGC	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	219, 414
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	9 cut(s)	5, 115, 142, 199, 454, 551, 640, 660, 668
CviKI_1	RGCY	9 cut(s)	5, 115, 142, 199, 454, 551, 640, 660, 668
CviQI	GTAC	2 cut(s)	219, 414
DdeI	CTNAG	4 cut(s)	270, 352, 681, 804
DpnI	GATC	7 cut(s)	111, 156, 216, 308, 537, 627, 732
DpnII	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
Eco130I	CCWWGG	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	494, 777
EcoO109I	RGGNCCY	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	1 cut(s)	85
FaiI	YATR	5 cut(s)	83, 316, 362, 544, 690
FatI	CATG	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	666, 669
FokI	GGATG	3 cut(s)	239, 668, 720
Fsp4HI	GCNGC	2 cut(s)	666, 669
FspBI	CTAG	5 cut(s)	107, 170, 248, 609, 641
GluI	GCNGC	2 cut(s)	666, 669
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	551, 660
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	419, 587, 815
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	175, 221
Hpy188I	TCNGA	6 cut(s)	159, 311, 375, 511, 730, 757
Hpy188III	TCNNGA	3 cut(s)	599, 737, 819
Hpy8I	GTNNAC	2 cut(s)	175, 221
HpyAV	CCTTC	2 cut(s)	688, 773
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	283, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	4 cut(s)	270, 352, 681, 804
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	5 cut(s)	107, 170, 248, 609, 641
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	7 cut(s)	111, 156, 216, 308, 537, 627, 732
MboI	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
MboII	GAAGA	5 cut(s)	34, 89, 144, 312, 487
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	6 cut(s)	12, 203, 284, 616, 720, 745
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	265, 465, 761, 781, 813
MroXI	GAANNNNTTC	2 cut(s)	505, 762
MseI	TTAA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeII	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	627
PdmI	GAANNNNTTC	2 cut(s)	505, 762
PfeI	GAWTC	2 cut(s)	419, 587
PkrI	GCNGC	2 cut(s)	667, 670
Psp1406I	AACGTT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	220, 415
RsaNI	GTAC	2 cut(s)	219, 414
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	2 cut(s)	666, 669
Sau3AI	GATC	7 cut(s)	109, 154, 214, 306, 535, 625, 730
Sau96I	GGNCC	1 cut(s)	550
SetI	ASST	6 cut(s)	117, 144, 265, 342, 642, 687
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	175
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	6 cut(s)	12, 203, 284, 616, 720, 745
SsiI	CCGC	1 cut(s)	665
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	5 cut(s)	107, 170, 248, 609, 641
StyI	CCWWGG	1 cut(s)	435
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	766
TasI	AATT	6 cut(s)	12, 203, 284, 616, 720, 745
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	419, 587
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TseI	GCWGC	1 cut(s)	668
TspDTI	ATGAA	2 cut(s)	464, 714
XapI	RAATTY	3 cut(s)	12, 203, 745
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	505, 762
XspI	CTAG	5 cut(s)	107, 170, 248, 609, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.