Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

11540206 .. 11542088

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTGGAAAATATCTTGGCAAGAAGGTTGTTCTCTCTGTTAATGAAGATGATGATAGTGACCATGATAGTGTTTCCTGTGGCAGTGATGGCAATGACTGCGATAACGAAGACACTGGAAGCCACTGTGGCCTTTCACTACAGAAGCTGAATTTAGGACCAAGAAAGAAGCTTCTTGTTTTCAGTCTCAACGGATGTTTAATCCACAGGGTTTACGGGCATGACAAGGCCAACATTCCAAGTGATCGTAGTCCTGATGGCACATATGGAAAACATCTAGTTTTCAAAAGACCTTTTGCAGAAGAGTTTATGCAGTTCTGTCTCGAAAGATTTGAAATTGGAATATGGTCTTCTGCCCAAGAGAAACATGTTGATGGTATCTTGGAGTCTGTAATGGGAAGAATCAGAAATAGGCTGTCATTTGTTTGGGATCAAGCTGAATGCACTGATACCGGGTTCAAGTCGGTAGAGAATACACGGAAGCCTTTGTTTGTTAAAGATCTGAAGGGATTGTGGAAATATCTTGATCGGAAGTATTCTGAATCTGACACACTGTTGATTGATGATAAGCCTTACAAAGCCCTGCTTAATCCTCCTCACACAGGGATATTCCTTGATTCCTACACAGCTGACAATGTCGATGACAATGCGTTAGATCCAAAGGGAAAGCTTGGGAAGTTTTTGGATGGTCTTGCAGTAGCAAAGGATGTGCAGCTTTATGTGAAGGACAACCCGTTCGATCAGCCTGCGATTTCACAGGACCATCCTGAATGGAAGTTTTACTCATCTGTTCTACAAAAGCTGGGGAAGCGACAAAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

275

Amino Acids

30.94

Weight (kDa)

6.08

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	57 - 238	1.6e-21	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	438, 650
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	286, 335, 460
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	7 cut(s)	148, 172, 437, 629, 670, 715, 802
AluI	AGCT	7 cut(s)	148, 172, 437, 629, 670, 715, 802
Alw26I	GTCTC	2 cut(s)	191, 326
AlwI	GGATC	2 cut(s)	438, 650
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	130, 228
ApeKI	GCWGC	1 cut(s)	712
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AspS9I	GGNCC	2 cut(s)	158, 760
AsuC2I	CCSGG	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	158, 760
BbsI	GAAGAC	2 cut(s)	117, 342
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	5 cut(s)	83, 251, 368, 680, 771
BcgI	CGANNNNNNTGC	4 cut(s)	629, 663, 728, 762
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	191, 326
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	1 cut(s)	713
BlsI	GCNGC	1 cut(s)	714
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	2 cut(s)	158, 760
BmgT120I	GGNCC	2 cut(s)	158, 760
BmrFI	CCNGG	1 cut(s)	454
BpiI	GAAGAC	2 cut(s)	117, 342
BpuMI	CCSGG	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	100
BseGI	GGATG	4 cut(s)	200, 691, 712, 763
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	724
BseYI	CCCAGC	1 cut(s)	802
BsgI	GTGCAG	1 cut(s)	731
BshFI	GGCC	2 cut(s)	132, 230
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	191, 326
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	132, 230
Bsp143I	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
BspANI	GGCC	2 cut(s)	132, 230
BspPI	GGATC	2 cut(s)	438, 650
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
Bst4CI	ACNGT	2 cut(s)	128, 555
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	747
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	4 cut(s)	200, 691, 712, 763
BstKTI	GATC	6 cut(s)	247, 433, 502, 529, 658, 742
BstMAI	GTCTC	2 cut(s)	191, 326
BstMBI	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 99, 129, 808, 817
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	2 cut(s)	117, 342
BstX2I	RGATCY	2 cut(s)	499, 655
BstYI	RGATCY	2 cut(s)	499, 655
BsuRI	GGCC	2 cut(s)	132, 230
BtsCI	GGATG	4 cut(s)	200, 691, 712, 763
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	5 cut(s)	91, 114, 124, 444, 551
Cac8I	GCNNGC	1 cut(s)	747
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	158, 760
CviAII	CATG	3 cut(s)	65, 221, 368
DpnI	GATC	6 cut(s)	246, 432, 501, 528, 657, 741
DpnII	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	158, 760
Eco57I	CTGAAG	1 cut(s)	524
EcoNI	CCTNNNNNAGG	1 cut(s)	600
FaeI	CATG	3 cut(s)	68, 224, 371
FaiI	YATR	8 cut(s)	66, 222, 265, 267, 311, 346, 369, 720
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	3 cut(s)	64, 220, 367
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	713
FokI	GGATG	4 cut(s)	207, 698, 719, 750
Fsp4HI	GCNGC	1 cut(s)	713
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	713
GsaI	CCCAGC	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	132, 230
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	3 cut(s)	68, 224, 371
HindIII	AAGCTT	2 cut(s)	170, 668
HinfI	GANTC	4 cut(s)	386, 402, 542, 617
HpaII	CCGG	1 cut(s)	453
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	407, 504, 531, 541, 547
Hpy188III	TCNNGA	4 cut(s)	254, 323, 524, 767
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	19, 499, 718
HpyCH4III	ACNGT	2 cut(s)	128, 555
HpyCH4V	TGCA	5 cut(s)	299, 313, 444, 695, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 99, 129, 808, 817
Hsp92II	CATG	3 cut(s)	68, 224, 371
Kzo9I	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
Lsp1109I	GCAGC	1 cut(s)	724
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	6 cut(s)	246, 432, 501, 528, 657, 741
MboI	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
MboII	GAAGA	5 cut(s)	59, 122, 314, 342, 411
MflI	RGATCY	2 cut(s)	499, 655
MluCI	AATT	2 cut(s)	151, 336
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	2 cut(s)	603, 606
MseI	TTAA	4 cut(s)	42, 200, 495, 588
MslI	CAYNNNNRTG	2 cut(s)	69, 372
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	90, 99, 129, 808, 817
NciI	CCSGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
NlaIII	CATG	3 cut(s)	68, 224, 371
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	371
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	402, 542, 617
PflFI	GACNNNGTC	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	714
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	802
PspPI	GGNCC	2 cut(s)	158, 760
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	499, 655
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	69, 372
SaqAI	TTAA	4 cut(s)	42, 200, 495, 588
SatI	GCNGC	1 cut(s)	713
Sau3AI	GATC	6 cut(s)	244, 430, 499, 526, 655, 739
Sau96I	GGNCC	2 cut(s)	158, 760
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	454
SetI	ASST	9 cut(s)	30, 150, 174, 295, 439, 631, 672, 717, 804
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	158, 760
SmiMI	CAYNNNNRTG	2 cut(s)	69, 372
Sse9I	AATT	2 cut(s)	151, 336
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	128, 555
TaqI	TCGA	3 cut(s)	324, 639, 738
TasI	AATT	2 cut(s)	151, 336
TfiI	GAWTC	3 cut(s)	402, 542, 617
Tru1I	TTAA	4 cut(s)	42, 200, 495, 588
Tru9I	TTAA	4 cut(s)	42, 200, 495, 588
TscAI	CASTG	5 cut(s)	91, 121, 131, 451, 558
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	2 cut(s)	207, 493
TspRI	CASTG	5 cut(s)	91, 121, 131, 451, 558
Tth111I	GACNNNGTC	1 cut(s)	635
VpaK11BI	GGWCC	2 cut(s)	158, 760
XagI	CCTNNNNNAGG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	371
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.