Rroxscaffold_6G00409450

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000875
Physical Location & Seq
Forward (+)
31967640 .. 31969447
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409450.1

Sequence Viewer

Length: 489 bp
ATGGCTGGAAAATGTCTTATTGGGAAGAAGGTTATTATCTCTGTTAATGGGGATGATGATGGTGACTACGATAGTGTTTCCTGTTGCAGTGATGGCAATGACTGCGATAACGAAGACACTGAAAGCCATTGTGGCCTTTCACTACAGAAGCTGAATTTAGGACCAAGAAAGAAGCTTCTTGTTTTCAGTCTCCATGGGTGTTTAATCAACAGGGTTTACCGGCACGACAATCAGGCCAGAATTCCAAGTGATCGTAGTCCTGATGGCAGATATGGAAATCATCTAGTTGAATGCACTGAAACCGGGTTCAAGTTGGTAGAGAATAGATCGAAGCCTTTGTTTCTTAAAGAACTGAAGGCATTGTGGAAATATCTTGATTGGCAGTATTCTGAATCCGACACACTGTTGATTGATGGTAAGCCATACAAGGCCCTACTCAATCCCTGGTTCAACAAAGAGAAACCAGCCCCTACAGCAGCAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

162

Amino Acids

18.19

Weight (kDa)

6.88

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 154, 240
AcuI CTGAAG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 290, 310, 451
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 3 cut(s) 151, 175, 485
AluI AGCT 3 cut(s) 151, 175, 485
Alw26I GTCTC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 3 cut(s) 133, 234, 429
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 2 cut(s) 154, 240
AspS9I GGNCC 2 cut(s) 161, 430
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 4 cut(s) 53, 86, 257, 407
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 143, 471
BglI GCCNNNNNGGC 1 cut(s) 132
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 304, 445
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 161, 430
BmrFI CCNGG 2 cut(s) 304, 445
BpiI GAAGAC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 193, 443
Bse118I RCCGGY 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 2 cut(s) 193, 443
BseGI GGATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 103
BshFI GGCC 3 cut(s) 135, 236, 431
BsiSI CCGG 2 cut(s) 220, 303
BsmAI GTCTC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 3 cut(s) 135, 236, 431
Bsp143I GATC 2 cut(s) 250, 326
Bsp19I CCATGG 1 cut(s) 193
BspANI GGCC 3 cut(s) 135, 236, 431
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 193, 443
BssMI GATC 2 cut(s) 250, 326
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 253, 329
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 250, 326
BstMWI GCNNNNNNNGC 5 cut(s) 93, 102, 132, 473, 482
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 302, 443
BstSFI CTRYAG 2 cut(s) 143, 471
BstV2I GAAGAC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 135, 236, 431
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 4 cut(s) 94, 117, 294, 401
CaiI CAGNNNCTG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 161, 430
CviAII CATG 1 cut(s) 194
DpnI GATC 2 cut(s) 252, 328
DpnII GATC 2 cut(s) 250, 326
Eco130I CCWWGG 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 195, 273, 424
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 3 cut(s) 135, 236, 431
HapII CCGG 2 cut(s) 220, 303
Hin1II CATG 1 cut(s) 197
HindIII AAGCTT 2 cut(s) 173, 483
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 220, 303
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 391, 397
Hpy188III TCNNGA 2 cut(s) 260, 374
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 22, 349
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 87, 294
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 102, 132, 473, 482
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 250, 326
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 252, 328
MboI GATC 2 cut(s) 250, 326
MboII GAAGA 2 cut(s) 37, 125
MluCI AATT 2 cut(s) 154, 240
MmeI TCCRAC 1 cut(s) 420
MseI TTAA 4 cut(s) 45, 203, 345, 487
MspI CCGG 2 cut(s) 220, 303
MspR9I CCNGG 2 cut(s) 304, 445
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 5 cut(s) 93, 102, 132, 473, 482
NciI CCSGG 1 cut(s) 304
NcoI CCATGG 1 cut(s) 193
NdeII GATC 2 cut(s) 250, 326
NlaIII CATG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 62
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 478
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspPI GGNCC 2 cut(s) 161, 430
PstNI CAGNNNCTG 1 cut(s) 151
SaqAI TTAA 4 cut(s) 45, 203, 345, 487
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 2 cut(s) 250, 326
Sau96I GGNCC 2 cut(s) 161, 430
ScrFI CCNGG 2 cut(s) 304, 445
SetI ASST 4 cut(s) 33, 153, 177, 487
SfcI CTRYAG 2 cut(s) 143, 471
SinI GGWCC 1 cut(s) 161
Sse9I AATT 2 cut(s) 154, 240
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 302, 443
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 329
TasI AATT 2 cut(s) 154, 240
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 4 cut(s) 45, 203, 345, 487
Tru9I TTAA 4 cut(s) 45, 203, 345, 487
TscAI CASTG 4 cut(s) 94, 124, 301, 408
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 62
TspRI CASTG 4 cut(s) 94, 124, 301, 408
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 154, 240
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.