RLG00000006003

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000875
Physical Location & Seq
Forward (+)
3426536 .. 3427396
861 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006003

Sequence Viewer

Length: 831 bp
ATGGCTGAAGAAATTCCTGTGAAGAAGCCGATTTTGTGTGGTGGTGATGATGACAAATATTACGAAGACACGGGAAGTGAATGTAGCCTTTCACTAGATCAGCTGACTTTAGAACCCAGAAGAAAGAAGCTTCTTGTTTTTGATCTGAATGGGTTACTAGTCTACAGGGTTTATCGTTCCAACAAGCTTGAATTTCCAAGTGATCGTACACCTGATGGGAGATTTGGCAACCATCTAGTTTTCAAAAGGCCTTTTGCTGAGGAGTTTGTGCAATTCTGCCTTGAAAGATTTGAAATCGGAATATGGTCTTCTGCCCTAGAGAAAAATGTTGAAGCTGTCTTAGATGGTATGATGGCAAATCAGAAAAATAGACTATTATTTGTGTGGGGTCAGTCTCAGTGTACAGATTCTGGGTTCAAGTCCTTGGAGAAAAGAATGAAGCCTCTATTTTTCAAAGAACTGAAGAAAGTGTGGTATCATTTAGACAGAAAGTATTCTGAATGTGATACTTTGTTGATTGATGATCAACCATACAAGGCCCTACTCAATCCTGCTCACACAGGGATTTTTCTGGAATCCTACAATCCTGACAATGCTAGTGATAATTTATTGGATCCAAATGGACAGCTAGGGGTGTATTTGGAAGGCCTTGCGGCTGCGACTAATGCTCAGGTTTATGTGAAGGAGAACCCTATTGGAGTGCCTGCGATTTCATCAGACCATCCTGACTGGAATTTCTACTCTGAAGTCCTTCGAGGGATTAAGGGAGAAATTGAGGAAAAGATTACGTACGTCTCAGCAATAAGAGTCTTTGAGTTTTTCAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

277

Amino Acids

31.75

Weight (kDa)

5.22

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 43 - 218 1.2e-20 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 653
AclWI GGATC 2 cut(s) 608, 621
AcsI RAATTY 3 cut(s) 12, 191, 733
AcuI CTGAAG 3 cut(s) 27, 482, 765
AfaI GTAC 3 cut(s) 208, 403, 791
AgsI TTSAA 7 cut(s) 191, 244, 284, 293, 332, 418, 454
AhlI ACTAGT 1 cut(s) 157
AluBI AGCT 5 cut(s) 103, 130, 187, 335, 628
AluI AGCT 5 cut(s) 103, 130, 187, 335, 628
Alw26I GTCTC 2 cut(s) 399, 799
AlwI GGATC 2 cut(s) 608, 621
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 248, 537, 646
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 3 cut(s) 12, 191, 733
Asp700I GAANNNNTTC 3 cut(s) 12, 493, 750
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 72, 300
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 643
BccI CCATC 5 cut(s) 209, 240, 338, 346, 729
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 399, 799
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 6 cut(s) 95, 158, 236, 317, 597, 629
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 654, 657
BlsI GCNGC 2 cut(s) 655, 658
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 72, 300
Bpu10I CCTNAGC 2 cut(s) 258, 669
BsaAI YACGTR 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 721, 831
BseMII CTCAG 4 cut(s) 249, 410, 683, 810
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 643
BshFI GGCC 3 cut(s) 250, 539, 648
BsiWI CGTACG 1 cut(s) 789
BsmAI GTCTC 2 cut(s) 399, 799
BsmBI CGTCTC 1 cut(s) 799
BsnI GGCC 3 cut(s) 250, 539, 648
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 5 cut(s) 97, 142, 202, 523, 613
BspACI CCGC 1 cut(s) 653
BspANI GGCC 3 cut(s) 250, 539, 648
BspCNI CTCAG 4 cut(s) 250, 409, 682, 809
BspLI GGNNCC 1 cut(s) 615
BspPI GGATC 2 cut(s) 608, 621
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 1 cut(s) 734
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 5 cut(s) 97, 142, 202, 523, 613
BssT1I CCWWGG 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 5 cut(s) 258, 340, 396, 669, 796
BstF5I GGATG 2 cut(s) 721, 831
BstKTI GATC 5 cut(s) 100, 145, 205, 526, 616
BstMAI GTCTC 2 cut(s) 399, 799
BstMBI GATC 5 cut(s) 97, 142, 202, 523, 613
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstSFI CTRYAG 1 cut(s) 163
BstSNI TACGTA 1 cut(s) 789
BstV1I GCAGC 1 cut(s) 643
BstV2I GAAGAC 2 cut(s) 72, 300
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BsuRI GGCC 3 cut(s) 250, 539, 648
BtsCI GGATG 2 cut(s) 721, 831
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 705
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 3 cut(s) 207, 402, 790
CviQI GTAC 3 cut(s) 207, 402, 790
DdeI CTNAG 5 cut(s) 258, 340, 396, 669, 796
DpnI GATC 5 cut(s) 99, 144, 204, 525, 615
DpnII GATC 5 cut(s) 97, 142, 202, 523, 613
Eco105I TACGTA 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 2 cut(s) 250, 648
Eco57I CTGAAG 3 cut(s) 27, 482, 765
EcoO109I RGGNCCY 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 799
FaiI YATR 4 cut(s) 304, 350, 532, 678
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 654, 657
FokI GGATG 1 cut(s) 708
Fsp4HI GCNGC 2 cut(s) 654, 657
FspBI CTAG 6 cut(s) 95, 158, 236, 317, 597, 629
GluI GCNGC 2 cut(s) 654, 657
HaeIII GGCC 3 cut(s) 250, 539, 648
HindIII AAGCTT 2 cut(s) 128, 185
HinfI GANTC 3 cut(s) 407, 575, 807
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 163, 209, 402
Hpy188I TCNGA 6 cut(s) 147, 299, 363, 499, 718, 745
Hpy188III TCNNGA 4 cut(s) 572, 587, 725, 823
Hpy8I GTNNAC 3 cut(s) 163, 209, 402
HpyAV CCTTC 3 cut(s) 638, 676, 761
HpyCH4IV ACGT 2 cut(s) 788, 792
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 5 cut(s) 258, 340, 396, 669, 796
HpySE526I ACGT 2 cut(s) 788, 792
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 5 cut(s) 97, 142, 202, 523, 613
Lsp1109I GCAGC 1 cut(s) 643
MaeI CTAG 6 cut(s) 95, 158, 236, 317, 597, 629
MaeII ACGT 2 cut(s) 788, 792
MaeIII GTNAC 1 cut(s) 153
MalI GATC 5 cut(s) 99, 144, 204, 525, 615
MboI GATC 5 cut(s) 97, 142, 202, 523, 613
MboII GAAGA 6 cut(s) 20, 34, 77, 132, 300, 475
MflI RGATCY 1 cut(s) 613
MluCI AATT 6 cut(s) 12, 191, 272, 604, 733, 771
MlyI GAGTC 1 cut(s) 816
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 253, 453, 749, 769
MroXI GAANNNNTTC 3 cut(s) 12, 493, 750
MseI TTAA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 665
NdeII GATC 5 cut(s) 97, 142, 202, 523, 613
NlaIV GGNNCC 1 cut(s) 615
PceI AGGCCT 2 cut(s) 250, 648
PdmI GAANNNNTTC 3 cut(s) 12, 493, 750
PfeI GAWTC 2 cut(s) 407, 575
Pfl23II CGTACG 1 cut(s) 789
PkrI GCNGC 2 cut(s) 655, 658
PleI GAGTC 1 cut(s) 815
PpsI GAGTC 1 cut(s) 815
Ppu21I YACGTR 1 cut(s) 789
PspLI CGTACG 1 cut(s) 789
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 208, 403, 791
RsaNI GTAC 3 cut(s) 207, 402, 790
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 2 cut(s) 654, 657
Sau3AI GATC 5 cut(s) 97, 142, 202, 523, 613
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 816
SetI ASST 9 cut(s) 105, 132, 189, 214, 337, 630, 675, 791, 795
SfcI CTRYAG 1 cut(s) 163
SnaBI TACGTA 1 cut(s) 789
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 6 cut(s) 12, 191, 272, 604, 733, 771
SseBI AGGCCT 2 cut(s) 250, 648
SsiI CCGC 1 cut(s) 653
SspI AATATT 1 cut(s) 59
SspMI CTAG 6 cut(s) 95, 158, 236, 317, 597, 629
StuI AGGCCT 2 cut(s) 250, 648
StyI CCWWGG 1 cut(s) 423
TaiI ACGT 2 cut(s) 791, 795
TaqI TCGA 1 cut(s) 754
TasI AATT 6 cut(s) 12, 191, 272, 604, 733, 771
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 2 cut(s) 407, 575
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 1 cut(s) 404
TseI GCWGC 1 cut(s) 656
TspDTI ATGAA 2 cut(s) 452, 702
TspRI CASTG 1 cut(s) 404
XapI RAATTY 3 cut(s) 12, 191, 733
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 3 cut(s) 12, 493, 750
XspI CTAG 6 cut(s) 95, 158, 236, 317, 597, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.