Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Forward (+)

14339277 .. 14341227

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCAAGGATGTCAGAAAAGTTGAAGAGCAAAGTTGAATGTTCTGGTAACAATAGTAGTGAAGCCAAAGAATGTGGCCTCCCTTTGGAGAAACTGAACCTTGGTCCAAGGAAGAAGCTTCTTATTCTTGGTGTAGGAGGATTGCTCTGTCATAGGGTATACCGCTGTGAAAAATCCGGCATACCGAAATTCCGCTGTCCAGATGCTGCATATGGAAACTTTTACGTGTACAAGAGGCCTTACTGTGAAGATTTTATGAAATTTTGCTTGGAAAGATTTGAAGTAGGAATATGGTCTTCTGCAAGGGAATGGTACATGGACAGCGCCTTGGATTGTGTAATGAAGGGATTGAGGAGAAAATTGGTATTTGCTTGGGATCAAGCTGAATGTACTGATTCTGGGTTCATGGCCTTGGAGAAGAGAGACAAGCCTATCTTACTGAAGGAGTTGAAGAAAATATGGGAAAACAAGGGTTCCAAAGCCACCCTTCCATCTTGGATTGTGCAGTATTCTTCAACCAACACACTATTAATAACAACTCCTTACAAGGCTCTGCTAAACCCTCCTCACACATCCATTTGTCCTGCTGAATACAAAGTTGACCAAGTTGATGACATGGCTTTAGGCCCTAAGGGTGAGTTGAGGCTTTACTTGGAAGGACTGGCAGATGCAGATGATGTTACTTCTTATGTTGAAAAGCATCCAATTGGCCAGCCTGCAATAACTAGTGCTCATGCTGATTGGGATTTCTATTCAAATATTATCAGTCATTTTCAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

8.23

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	163, 193
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	188, 260
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	3 cut(s)	230, 314, 391
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	7 cut(s)	25, 38, 281, 451, 516, 695, 756
AhlI	ACTAGT	1 cut(s)	725
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	118, 383
AluI	AGCT	2 cut(s)	118, 383
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	5 cut(s)	76, 236, 408, 625, 709
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	188, 260
AseI	ATTAAT	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	104, 626
AsuHPI	GGTGA	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	711
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	417
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	104, 626
BmiI	GGNNCC	1 cut(s)	475
BmsI	GCATC	3 cut(s)	193, 658, 709
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BsaAI	YACGTR	1 cut(s)	226
BsaJI	CCNNGG	5 cut(s)	5, 100, 107, 327, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	666
Bse21I	CCTNAGG	1 cut(s)	630
BseDI	CCNNGG	5 cut(s)	5, 100, 107, 327, 411
BseGI	GGATG	3 cut(s)	15, 572, 700
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	2 cut(s)	367, 555
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	5 cut(s)	78, 238, 410, 627, 711
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	5 cut(s)	78, 238, 410, 627, 711
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	2 cut(s)	163, 193
BspANI	GGCC	5 cut(s)	78, 238, 410, 627, 711
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	5 cut(s)	5, 100, 107, 327, 411
BssMI	GATC	1 cut(s)	376
BssNAI	GTATAC	1 cut(s)	160
BssT1I	CCWWGG	5 cut(s)	5, 100, 107, 327, 411
Bst1107I	GTATAC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	20, 413
BstAUI	TGTACA	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	713, 717
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	15, 572, 700
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	160
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	5 cut(s)	78, 238, 410, 627, 711
BtsCI	GGATG	3 cut(s)	15, 572, 700
Cac8I	GCNNGC	2 cut(s)	713, 717
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	104, 626
Csp6I	GTAC	3 cut(s)	229, 313, 390
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	4 cut(s)	316, 406, 616, 734
CviQI	GTAC	3 cut(s)	229, 313, 390
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	20, 413
EarI	CTCTTC	2 cut(s)	20, 413
Eco130I	CCWWGG	5 cut(s)	5, 100, 107, 327, 411
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	461
Eco81I	CCTNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	626
EcoT14I	CCWWGG	5 cut(s)	5, 100, 107, 327, 411
ErhI	CCWWGG	5 cut(s)	5, 100, 107, 327, 411
FaeI	CATG	4 cut(s)	319, 409, 619, 737
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 471, 503
FatI	CATG	4 cut(s)	315, 405, 615, 733
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	22, 559, 687
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	78, 238, 410, 627, 711
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	319, 409, 619, 737
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	3 cut(s)	160, 229, 601
Hpy188I	TCNGA	2 cut(s)	16, 777
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	160, 229, 601
HpyAV	CCTTC	5 cut(s)	337, 436, 497, 650, 772
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	209, 302, 505, 671, 719
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	319, 409, 619, 737
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	8 cut(s)	30, 190, 213, 384, 597, 647, 725, 729
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	3 cut(s)	193, 658, 709
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	47, 679
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	7 cut(s)	37, 124, 260, 288, 430, 463, 504
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	733
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	4 cut(s)	188, 260, 359, 705
MluNI	TGGCCA	1 cut(s)	711
MnlI	CCTC	7 cut(s)	89, 131, 228, 345, 573, 576, 636
Mox20I	TGGCCA	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	165, 195
MspI	CCGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	705
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	4 cut(s)	319, 409, 619, 737
NlaIV	GGNNCC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	104, 626
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	230, 314, 391
RsaNI	GTAC	3 cut(s)	229, 313, 390
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	104, 626
SduI	GDGCHC	1 cut(s)	733
SetI	ASST	4 cut(s)	102, 120, 228, 385
SfaNI	GCATC	3 cut(s)	193, 658, 709
SinI	GGWCC	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	725
Sse9I	AATT	4 cut(s)	188, 260, 359, 705
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	2 cut(s)	163, 193
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	1 cut(s)	726
StuI	AGGCCT	1 cut(s)	238
StyI	CCWWGG	5 cut(s)	5, 100, 107, 327, 411
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	228
TasI	AATT	4 cut(s)	188, 260, 359, 705
TatI	WGTACW	2 cut(s)	228, 389
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	272, 356, 394
VpaK11BI	GGWCC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	2 cut(s)	188, 260
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.