Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

11576624 .. 11578147

Gene Structure 1524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGATTGAAGGGTTTAAGCTTCTGGGTTTGTTAAGGCCTCAATTTCGGTCAGCGTTGCCGTCTAGAGCCGTAGAGGCGAGAAGGACTTTATACCACATCTTATCAATTAAGATTACCCAAACCTTGCCGCCGGCAGCTGCATCCAATCAATTCAAGACAATCTTCGATCTCCAGAGTGCTCACACAGGGATTTTTCTGCAATCCTACAATCCTGACAATGCTAGTGATAATTTGTTGGATCCAAATGGAGAGCTAGGGGTGTATTTGGATGGCCTTGCGAATGCAAGTGATGCTCAGGTTTATGTGAAGGAGAATCCAATTGGGGTGCCATCAATTTCATCTGACCATCCTGATTGGAATTTCTACTTCGAAGTCCTTCAAGGGTTTAAGGGAGAAAGTGAGGAAAAGACTACGTCTCAGCAACGAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

146

Amino Acids

16.13

Weight (kDa)

5.3

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	2 cut(s)	236, 249
AcsI	RAATTY	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	11, 157, 383
AluBI	AGCT	3 cut(s)	22, 140, 256
AluI	AGCT	3 cut(s)	22, 140, 256
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	2 cut(s)	38, 274
ApeKI	GCWGC	2 cut(s)	137, 140
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuII	TTCGAA	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	127, 149
BccI	CCATC	3 cut(s)	266, 340, 357
BceAI	ACGGC	2 cut(s)	46, 56
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	3 cut(s)	66, 225, 257
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	3 cut(s)	131, 138, 141
BlsI	GCNGC	3 cut(s)	132, 139, 142
BmiI	GGNNCC	2 cut(s)	243, 330
BmsI	GCATC	2 cut(s)	152, 283
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	133
BseGI	GGATG	3 cut(s)	143, 277, 349
BseMII	CTCAG	2 cut(s)	311, 434
BseXI	GCAGC	2 cut(s)	127, 149
BshFI	GGCC	2 cut(s)	40, 276
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	40, 276
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	169, 241
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	40, 276
BspCNI	CTCAG	2 cut(s)	310, 433
BspLI	GGNNCC	2 cut(s)	243, 330
BspPI	GGATC	2 cut(s)	236, 249
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	2 cut(s)	169, 241
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	297, 420
BstF5I	GGATG	3 cut(s)	143, 277, 349
BstKTI	GATC	2 cut(s)	172, 244
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	169, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 293
BstV1I	GCAGC	2 cut(s)	127, 149
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	40, 276
BtsCI	GGATG	3 cut(s)	143, 277, 349
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	133
CviJI	RGCY	6 cut(s)	22, 40, 71, 140, 256, 276
CviKI_1	RGCY	6 cut(s)	22, 40, 71, 140, 256, 276
DdeI	CTNAG	2 cut(s)	297, 420
DpnI	GATC	2 cut(s)	171, 243
DpnII	GATC	2 cut(s)	169, 241
Eco147I	AGGCCT	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	423
FaiI	YATR	2 cut(s)	94, 306
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
Fnu4HI	GCNGC	3 cut(s)	131, 138, 141
FokI	GGATG	3 cut(s)	130, 284, 336
Fsp4HI	GCNGC	3 cut(s)	131, 138, 141
FspBI	CTAG	3 cut(s)	66, 225, 257
GluI	GCNGC	3 cut(s)	131, 138, 141
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	40, 276
HapII	CCGG	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	316, 431
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	6 cut(s)	66, 157, 175, 215, 353, 435
HpyAV	CCTTC	4 cut(s)	5, 78, 304, 389
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	143, 202, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 293
HpyF3I	CTNAG	2 cut(s)	297, 420
HpySE526I	ACGT	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	169, 241
LpnPI	CCDG	7 cut(s)	11, 147, 174, 188, 228, 284, 366
Lsp1109I	GCAGC	2 cut(s)	127, 149
LweI	GCATC	2 cut(s)	152, 283
MaeI	CTAG	3 cut(s)	66, 225, 257
MaeII	ACGT	1 cut(s)	416
MalI	GATC	2 cut(s)	171, 243
MboI	GATC	2 cut(s)	169, 241
MboII	GAAGA	2 cut(s)	16, 157
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	7 cut(s)	44, 108, 152, 232, 321, 336, 361
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	51, 70, 397
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	18, 35, 111, 390
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	77, 293
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	2 cut(s)	169, 241
NgoMIV	GCCGGC	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	243, 330
NspV	TTCGAA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	132, 139, 142
PspN4I	GGNNCC	2 cut(s)	243, 330
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	18, 35, 111, 390
SatI	GCNGC	3 cut(s)	131, 138, 141
Sau3AI	GATC	2 cut(s)	169, 241
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	24, 128, 142, 258, 303, 419
SfaNI	GCATC	2 cut(s)	152, 283
SfuI	TTCGAA	1 cut(s)	372
Sse9I	AATT	7 cut(s)	44, 108, 152, 232, 321, 336, 361
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	3 cut(s)	66, 225, 257
StuI	AGGCCT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	168, 372
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	7 cut(s)	44, 108, 152, 232, 321, 336, 361
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	18, 35, 111, 390
Tru9I	TTAA	4 cut(s)	18, 35, 111, 390
TseI	GCWGC	2 cut(s)	137, 140
TspDTI	ATGAA	2 cut(s)	17, 330
Tth111I	GACNNNGTC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	3 cut(s)	66, 225, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.