Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036882.1

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

72 .. 2311

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036882.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgttgcaactgggacctcaagaaaatgactttgcggcttacaatgtcgtttctgcgctttggactgtgtactttcttgtgcattcttactttaagcctggatgtggttttgataagctgttggttgcttgcttgagcaggattgaaaagaatgattcagtagctataatgagcgctgctgaggaagtcttggaagcacagaaaaagcaaaatccttcgtttgagttatctggaaagcttgctatggaaaccaatagattcagaggagatagctataagaagaatcttctttctagtagtaactatgatggtgatgaagactatgataatgaaagaactcgaggcatatgtaggctgaatctagcaccaagaaaaaaaaagcttcttgtgtttgatctcaatggcttactagtctacagagttttttgtttcaacaagagtggtattccaagggatcgtactcctgatgggaaatgtggaaaccatctagtttttaaaagagcttttgctgaggagtttatgctattctgccttgaaagatttgaagttggaatatggacttctgcacttgagaaaaatgttgatggtgtcttggattgtgtgatggaaaagctgagaagcagacttatatttgtgtgggatcagcatcaatgtactgattctgggttcaagtccctggaaacgaaaatgaagcctctgtttttcaaagaactgaagagagtatgggatcattttgagggaaagttttctgcatctgatactctattgattgatgatcagccttacaaggcccttctcaatcctccttacacagggattttcctggatccctacattcctgacaatggtactgacaatgctttagatccaaagaaagagttggggaagtatttggctggccttgcatttgcagatgatgttcagcattacgtgaaggacaatccctttggccagcctgcaatttcatctgaacatcctgattggaatttttactctcatgttctccgaaaacttggaaaggatctactttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

344

Amino Acids

39.39

Weight (kDa)

6.2

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	7 cut(s)	462, 648, 735, 821, 834, 860, 1029
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	1 cut(s)	734
AfaI	GTAC	4 cut(s)	71, 460, 655, 850
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	104, 812, 845
AgsI	TTSAA	6 cut(s)	146, 433, 536, 545, 670, 706
AhlI	ACTAGT	1 cut(s)	409
AjnI	CCWGG	3 cut(s)	97, 675, 822
AluBI	AGCT	7 cut(s)	118, 164, 238, 273, 382, 503, 613
AluI	AGCT	7 cut(s)	118, 164, 238, 273, 382, 503, 613
AlwI	GGATC	7 cut(s)	462, 648, 735, 821, 834, 860, 1029
Ama87I	CYCGRG	1 cut(s)	339
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	3 cut(s)	789, 898, 949
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	985
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
Asp700I	GAANNNNTTC	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	58, 176
AspS9I	GGNCC	2 cut(s)	14, 790
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	951
BamHI	GGATCC	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	324
BbvCI	CCTCAGC	2 cut(s)	180, 510
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	5 cut(s)	302, 461, 492, 578, 598
BciT130I	CCWGG	3 cut(s)	99, 677, 824
BclI	TGATCA	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	4 cut(s)	294, 362, 410, 488
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	2 cut(s)	36, 177
BlsI	GCNGC	2 cut(s)	37, 178
Bme1390I	CCNGG	3 cut(s)	99, 677, 824
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	14, 790
BmiI	GGNNCC	2 cut(s)	15, 828
BmrFI	CCNGG	3 cut(s)	99, 677, 824
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	655, 761
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	2 cut(s)	180, 510
BpuEI	CTTGAG	2 cut(s)	154, 590
BsaAI	YACGTR	1 cut(s)	931
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	449, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 812, 845
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	99, 677, 824
BseDI	CCNNGG	2 cut(s)	449, 675
BseGI	GGATG	2 cut(s)	107, 973
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	104, 812, 845
BseMII	CTCAG	3 cut(s)	171, 501, 605
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	2 cut(s)	279, 527
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	791, 900, 951
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	27, 658
BslI	CCNNNNNNNGG	3 cut(s)	104, 812, 845
BsmFI	GGGAC	2 cut(s)	27, 658
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	791, 900, 951
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	3 cut(s)	791, 900, 951
BspCNI	CTCAG	3 cut(s)	172, 502, 606
BspLI	GGNNCC	2 cut(s)	15, 828
BspPI	GGATC	7 cut(s)	462, 648, 735, 821, 834, 860, 1029
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	449, 675
BssMI	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	3 cut(s)	99, 677, 824
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	710
BstBAI	YACGTR	1 cut(s)	931
BstC8I	GCNNGC	5 cut(s)	130, 240, 898, 953, 957
BstDEI	CTNAG	3 cut(s)	180, 510, 614
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	2 cut(s)	107, 973
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	58, 176
BstKTI	GATC	8 cut(s)	397, 457, 643, 730, 778, 829, 868, 1024
BstMBI	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNI	CCWGG	3 cut(s)	99, 677, 824
BstSCI	CCNGG	3 cut(s)	97, 675, 822
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	3 cut(s)	826, 865, 1021
BstYI	RGATCY	3 cut(s)	826, 865, 1021
BsuRI	GGCC	3 cut(s)	791, 900, 951
BtsCI	GGATG	2 cut(s)	107, 973
Cac8I	GCNNGC	5 cut(s)	130, 240, 898, 953, 957
CfoI	GCGC	2 cut(s)	58, 176
Cfr13I	GGNCC	2 cut(s)	14, 790
Csp6I	GTAC	4 cut(s)	70, 459, 654, 849
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	1 cut(s)	998
CviQI	GTAC	4 cut(s)	70, 459, 654, 849
DdeI	CTNAG	3 cut(s)	180, 510, 614
DpnI	GATC	8 cut(s)	396, 456, 642, 729, 777, 828, 867, 1023
DpnII	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	14
Eco47III	AGCGCT	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	2 cut(s)	14, 790
EcoRII	CCWGG	3 cut(s)	97, 675, 822
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	1 cut(s)	1001
FaqI	GGGAC	2 cut(s)	27, 658
FatI	CATG	1 cut(s)	997
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	36, 177
FokI	GGATG	2 cut(s)	114, 960
Fsp4HI	GCNGC	2 cut(s)	36, 177
FspBI	CTAG	4 cut(s)	294, 362, 410, 488
GlaI	GCGC	2 cut(s)	57, 175
GluI	GCNGC	2 cut(s)	36, 177
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	791, 900, 951
HhaI	GCGC	2 cut(s)	58, 176
Hin1II	CATG	1 cut(s)	1001
Hin6I	GCGC	2 cut(s)	56, 174
HinP1I	GCGC	2 cut(s)	56, 174
HindIII	AAGCTT	2 cut(s)	236, 380
HinfI	GANTC	5 cut(s)	155, 258, 283, 358, 659
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	70, 415
Hpy188I	TCNGA	4 cut(s)	263, 757, 970, 1007
Hpy188III	TCNNGA	5 cut(s)	20, 231, 464, 839, 977
Hpy8I	GTNNAC	2 cut(s)	70, 415
HpyAV	CCTTC	3 cut(s)	225, 803, 928
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	7 cut(s)	7, 82, 566, 752, 905, 911, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	3 cut(s)	180, 510, 614
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	1 cut(s)	1001
HspAI	GCGC	2 cut(s)	56, 174
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	2 cut(s)	655, 761
MaeI	CTAG	4 cut(s)	294, 362, 410, 488
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	8 cut(s)	396, 456, 642, 729, 777, 828, 867, 1023
MboI	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
MboII	GAAGA	4 cut(s)	278, 292, 329, 727
MflI	RGATCY	3 cut(s)	826, 865, 1021
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	2 cut(s)	960, 985
MluNI	TGGCCA	1 cut(s)	951
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	27, 175, 257, 335, 505, 705, 730, 813
Mox20I	TGGCCA	1 cut(s)	951
MroXI	GAANNNNTTC	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	3 cut(s)	93, 495, 1033
Msp20I	TGGCCA	1 cut(s)	951
MspR9I	CCNGG	3 cut(s)	99, 677, 824
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	3 cut(s)	99, 677, 824
MwoI	GCNNNNNNNGC	1 cut(s)	902
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
NlaIII	CATG	1 cut(s)	1001
NlaIV	GGNNCC	2 cut(s)	15, 828
PaeR7I	CTCGAG	1 cut(s)	339
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	5 cut(s)	155, 258, 283, 358, 659
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	2 cut(s)	37, 178
Ppu21I	YACGTR	1 cut(s)	931
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	3 cut(s)	97, 675, 822
PspGI	CCWGG	3 cut(s)	97, 675, 822
PspN4I	GGNNCC	2 cut(s)	15, 828
PspPI	GGNCC	2 cut(s)	14, 790
PspPPI	RGGWCCY	1 cut(s)	14
PspXI	VCTCGAGB	1 cut(s)	339
PsuI	RGATCY	3 cut(s)	826, 865, 1021
RsaI	GTAC	4 cut(s)	71, 460, 655, 850
RsaNI	GTAC	4 cut(s)	70, 459, 654, 849
SaqAI	TTAA	3 cut(s)	93, 495, 1033
SatI	GCNGC	2 cut(s)	36, 177
Sau3AI	GATC	8 cut(s)	394, 454, 640, 727, 775, 826, 865, 1021
Sau96I	GGNCC	2 cut(s)	14, 790
ScrFI	CCNGG	3 cut(s)	99, 677, 824
SetI	ASST	9 cut(s)	19, 120, 166, 240, 275, 384, 505, 615, 933
SfaNI	GCATC	2 cut(s)	655, 761
SfcI	CTRYAG	1 cut(s)	415
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	339
SmlI	CTYRAG	4 cut(s)	18, 133, 339, 569
SmoI	CTYRAG	4 cut(s)	18, 133, 339, 569
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	2 cut(s)	960, 985
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	4 cut(s)	294, 362, 410, 488
StyD4I	CCNGG	3 cut(s)	97, 675, 822
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	1 cut(s)	340
TasI	AATT	2 cut(s)	960, 985
TatI	WGTACW	2 cut(s)	69, 653
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	5 cut(s)	155, 258, 283, 358, 659
Tru1I	TTAA	3 cut(s)	93, 495, 1033
Tru9I	TTAA	3 cut(s)	93, 495, 1033
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	330, 345, 704, 954
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	810
XapI	RAATTY	1 cut(s)	985
XhoI	CTCGAG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	4 cut(s)	294, 362, 410, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.