RLG00000024121

catalytic domain of ctd-like phosphatases

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
32149998 .. 32151340
1343 bp
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UTR
Exon/CDS
Intron
RLM00000024121

Sequence Viewer

Length: 495 bp
ATGGCTGGAGAAAGTCCTCCGAAGAAGCTTATTTTGTATGGTGGTGGTGGTGGTGGCGGCGGTGATGATGATGATGGTGATGATGACAAACATTACGAAGACACGAGAAGAGAATGTAGCCTTTCACTAGATAAGCTGACTTTGGAACCCAGAAGAAAGAAGCTTCTTGTTTTTGAATGGGGTCAGTCTCAATGTACAGATTCTGGGTTCAAGTCCTTGGAGAAAAGCATGAAGCCGCTATTTTTCAAAGAACTGAAGAAAGTACTGTGGTATCATTTCAGCGGAAAGTATTCTGAATATCCAAATGGACAGTTAGGGTTGTATTTGGATGGCCTTGCGGCTGCGACCAATGCTCAGGTTTATGTGAAGGAGAACCCTATTGGACTGCCTGCAATTTCATCAGACCATCCTGATTGGAATTTCTACTCTGAAGTCCTTCGAGGGATTAAGGGAGAAAGTGAGGAAAAGATTACGTTCCAGCAACAAGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.39

Weight (kDa)

5.14

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 57, 60, 236, 282, 338
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 2 cut(s) 275, 450
AfaI GTAC 2 cut(s) 196, 264
AgsI TTSAA 3 cut(s) 176, 211, 247
AluBI AGCT 3 cut(s) 28, 136, 163
AluI AGCT 3 cut(s) 28, 136, 163
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 418
Asp700I GAANNNNTTC 2 cut(s) 289, 435
AsuHPI GGTGA 2 cut(s) 74, 89
BaeI ACNNNNGTAYC 2 cut(s) 254, 287
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 328
BccI CCATC 3 cut(s) 68, 323, 414
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 128
BisI GCNGC 4 cut(s) 58, 236, 339, 342
BlsI GCNGC 4 cut(s) 59, 237, 340, 343
BmcAI AGTACT 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 334, 406
BseMII CTCAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 194
BspACI CCGC 5 cut(s) 57, 60, 236, 282, 338
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 216
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 267, 312
Bst6I CTCTTC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 334, 406
BstMAI GTCTC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 2 cut(s) 334, 406
Cac8I GCNNGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 203
Csp6I GTAC 2 cut(s) 195, 263
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 5, 28, 120, 136, 163, 235, 333, 341
CviKI_1 RGCY 8 cut(s) 5, 28, 120, 136, 163, 235, 333, 341
CviQI GTAC 2 cut(s) 195, 263
DdeI CTNAG 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 275, 450
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 39, 230, 363
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 58, 236, 339, 342
FokI GGATG 2 cut(s) 341, 393
Fsp4HI GCNGC 4 cut(s) 58, 236, 339, 342
FspBI CTAG 1 cut(s) 128
GluI GCNGC 4 cut(s) 58, 236, 339, 342
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 333
Hin1II CATG 1 cut(s) 232
HindIII AAGCTT 2 cut(s) 26, 161
HinfI GANTC 2 cut(s) 200, 488
HphI GGTGA 2 cut(s) 74, 89
Hpy188I TCNGA 4 cut(s) 21, 295, 403, 430
Hpy188III TCNNGA 2 cut(s) 410, 492
HpyAV CCTTC 2 cut(s) 361, 446
HpyCH4III ACNGT 2 cut(s) 267, 312
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 1 cut(s) 232
LpnPI CCDG 6 cut(s) 163, 189, 341, 402, 423, 491
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 473
MboII GAAGA 5 cut(s) 34, 110, 120, 165, 268
MluCI AATT 2 cut(s) 393, 418
MnlI CCTC 3 cut(s) 27, 434, 454
MroXI GAANNNNTTC 2 cut(s) 289, 435
MseI TTAA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 350
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 147
PdmI GAANNNNTTC 2 cut(s) 289, 435
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 4 cut(s) 59, 237, 340, 343
PspN4I GGNNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 196, 264
RsaNI GTAC 2 cut(s) 195, 263
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 4 cut(s) 58, 236, 339, 342
ScaI AGTACT 1 cut(s) 264
SetI ASST 5 cut(s) 30, 138, 165, 360, 476
Sse9I AATT 2 cut(s) 393, 418
SsiI CCGC 5 cut(s) 57, 60, 236, 282, 338
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 267, 312
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 439
TasI AATT 2 cut(s) 393, 418
TatI WGTACW 2 cut(s) 194, 262
TauI GCSGC 3 cut(s) 60, 238, 341
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 245, 387
XapI RAATTY 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 289, 435
XspI CTAG 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.