Rh3DG176600

catalytic domain of ctd-like phosphatases

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
15656591 .. 15658669
2079 bp
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UTR
Exon/CDS
Intron
Rh3DG176600.1

Sequence Viewer

Length: 381 bp
ATGGGGATGATGATGCATGGTGACTATGATAGTGTTTCCTGTCGCAGTGATGGCAATGACTGCGATAACGAAGACACTGGAAGCCATTGTGGCCTTTCACTACAGAAGCTGAATTTAGGACCAAGAAAGAAGCTTCTTGTTTTCAATCTCCATGGGTGTTTAATCAACAGGGTTTACCGGCACGACAGTCAGGCCAGAATTCCAAGTGATCGTAGTCCTGATGGCAGATATGGAAATCATCTAGTAGCAAAGGATGTTCAGCTTTATGTGAAGGACAACCCGTTTGGTCAGCCTGCGATTTCACCGGACCATCCTGATTGGAATTTTTACTACACACTGTTCTCCGAACGCTGGGGAAATGACAAAAGCCTTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.36

Weight (kDa)

6.02

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 112, 198, 322
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 3 cut(s) 109, 133, 262
AluI AGCT 3 cut(s) 109, 133, 262
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 2 cut(s) 91, 192
ApoI RAATTY 3 cut(s) 112, 198, 322
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspS9I GGNCC 2 cut(s) 119, 307
AsuHPI GGTGA 2 cut(s) 32, 294
AvaII GGWCC 2 cut(s) 119, 307
BbsI GAAGAC 1 cut(s) 78
BccI CCATC 3 cut(s) 44, 215, 318
BfaI CTAG 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 90
Bme18I GGWCC 2 cut(s) 119, 307
BmgT120I GGNCC 2 cut(s) 119, 307
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 3 cut(s) 12, 259, 310
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 351
BshFI GGCC 2 cut(s) 93, 194
BsiSI CCGG 2 cut(s) 178, 305
BslI CCNNNNNNNGG 1 cut(s) 351
BsnI GGCC 2 cut(s) 93, 194
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 2 cut(s) 93, 194
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 188, 339
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 3 cut(s) 12, 259, 310
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 90
BstSFI CTRYAG 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 2 cut(s) 93, 194
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 12, 259, 310
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 3 cut(s) 52, 75, 335
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 119, 307
CviAII CATG 2 cut(s) 17, 152
CviJI RGCY 8 cut(s) 84, 93, 109, 133, 194, 262, 292, 369
CviKI_1 RGCY 8 cut(s) 84, 93, 109, 133, 194, 262, 292, 369
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 119, 307
EcoRI GAATTC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 20, 155
FaiI YATR 5 cut(s) 18, 27, 153, 231, 267
FatI CATG 2 cut(s) 16, 151
FokI GGATG 3 cut(s) 19, 266, 297
FspBI CTAG 1 cut(s) 242
GsaI CCCAGC 1 cut(s) 355
HaeIII GGCC 2 cut(s) 93, 194
HapII CCGG 2 cut(s) 178, 305
Hin1II CATG 2 cut(s) 20, 155
HindIII AAGCTT 1 cut(s) 131
HpaII CCGG 2 cut(s) 178, 305
HphI GGTGA 2 cut(s) 32, 294
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 218, 314
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 188, 339
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 90
Hsp92II CATG 2 cut(s) 20, 155
Kzo9I GATC 1 cut(s) 208
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 83
MluCI AATT 3 cut(s) 112, 198, 322
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 1 cut(s) 161
MspI CCGG 2 cut(s) 178, 305
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 90
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 20, 155
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 119, 307
PstNI CAGNNNCTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 119, 307
SetI ASST 3 cut(s) 111, 135, 264
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 101
SinI GGWCC 2 cut(s) 119, 307
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 112, 198, 322
SspMI CTAG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 188, 339
TasI AATT 3 cut(s) 112, 198, 322
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 3 cut(s) 52, 82, 342
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspRI CASTG 3 cut(s) 52, 82, 342
VpaK11BI GGWCC 2 cut(s) 119, 307
XapI RAATTY 3 cut(s) 112, 198, 322
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.