Vesicle-fusing
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA | PF00004 | 242 - 383 | 4.7e-34 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_3 | PF17862 | 410 - 446 | 1.8e-08 | AAA+ lid domain |
| AAA | PF00004 | 524 - 639 | 5.3e-10 | ATPase family associated with various cellular activities (AAA) |
| C2 | PF00168 | 713 - 792 | 1.4e-09 | C2 domain |
| NIF | PF03031 | 1502 - 1683 | 2.1e-19 | NLI interacting factor-like phosphatase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4620, 4911 |
| AarI | CACCTGC | 1 cut(s) | 2159 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1332 |
| AatII | GACGTC | 1 cut(s) | 2090 |
| Acc36I | ACCTGC | 2 cut(s) | 1449, 2159 |
| AccB1I | GGYRCC | 1 cut(s) | 4237 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2381, 4079 |
| AccBSI | CCGCTC | 1 cut(s) | 168 |
| AccI | GTMKAC | 5 cut(s) | 330, 3418, 3634, 3853, 4539 |
| AccII | CGCG | 1 cut(s) | 1401 |
| AcoI | YGGCCR | 2 cut(s) | 169, 5074 |
| AcsI | RAATTY | 8 cut(s) | 783, 1137, 1185, 1898, 1904, 2755, 3119, 5110 |
| AcuI | CTGAAG | 6 cut(s) | 843, 2244, 2672, 2781, 3027, 4859 |
| AcyI | GRCGYC | 2 cut(s) | 2087, 4238 |
| AdeI | CACNNNGTG | 1 cut(s) | 2912 |
| AfeI | AGCGCT | 1 cut(s) | 1850 |
| AflII | CTTAAG | 2 cut(s) | 1346, 1844 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2812 |
| AhlI | ACTAGT | 3 cut(s) | 1892, 3575, 4534 |
| AjnI | CCWGG | 6 cut(s) | 375, 1117, 2407, 2506, 4800, 4947 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2368, 2400, 3724, 3756 |
| Alw21I | GWGCWC | 4 cut(s) | 1214, 1707, 2253, 4141 |
| Alw26I | GTCTC | 8 cut(s) | 524, 1108, 2820, 2943, 3183, 3311, 3530, 3983 |
| Alw44I | GTGCAC | 2 cut(s) | 1703, 2249 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2036, 2174, 2489 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| Aor51HI | AGCGCT | 1 cut(s) | 1850 |
| ApaI | GGGCCC | 1 cut(s) | 1583 |
| ApaLI | GTGCAC | 2 cut(s) | 1703, 2249 |
| ApeKI | GCWGC | 6 cut(s) | 452, 727, 1610, 2030, 2033, 4301 |
| ApoI | RAATTY | 8 cut(s) | 783, 1137, 1185, 1898, 1904, 2755, 3119, 5110 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 5054, 5086 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4108, 4870 |
| AspLEI | GCGC | 3 cut(s) | 1403, 1851, 4240 |
| AsuC2I | CCSGG | 1 cut(s) | 744 |
| AsuII | TTCGAA | 1 cut(s) | 652 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 3 cut(s) | 737, 1799, 2367 |
| BaeGI | GKGCMC | 3 cut(s) | 1583, 1707, 2253 |
| BalI | TGGCCA | 1 cut(s) | 5076 |
| BamHI | GGATCC | 1 cut(s) | 4951 |
| BanI | GGYRCC | 1 cut(s) | 4237 |
| BanII | GRGCYC | 3 cut(s) | 1214, 1583, 4141 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 3121, 3153, 3508, 3540 |
| BauI | CACGAG | 2 cut(s) | 1254, 2742 |
| BbsI | GAAGAC | 9 cut(s) | 1670, 1711, 2660, 3360, 3579, 3795, 4010, 4032, 4449 |
| Bbv12I | GWGCWC | 4 cut(s) | 1214, 1707, 2253, 4141 |
| BbvCI | CCTCAGC | 3 cut(s) | 2962, 4305, 4635 |
| BbvI | GCAGC | 6 cut(s) | 439, 714, 1622, 2020, 2042, 4288 |
| BceAI | ACGGC | 7 cut(s) | 49, 71, 966, 1139, 3249, 3468, 3684 |
| BciT130I | CCWGG | 6 cut(s) | 377, 1119, 2409, 2508, 4802, 4949 |
| BclI | TGATCA | 3 cut(s) | 2196, 2491, 4900 |
| BcnI | CCSGG | 1 cut(s) | 744 |
| BcoDI | GTCTC | 8 cut(s) | 524, 1108, 2820, 2943, 3183, 3311, 3530, 3983 |
| BcuI | ACTAGT | 3 cut(s) | 1892, 3575, 4534 |
| BfaI | CTAG | 9 cut(s) | 1574, 1584, 1893, 1991, 2838, 3576, 4487, 4535, 4613 |
| BfmI | CTRYAG | 5 cut(s) | 453, 1172, 1267, 2175, 4540 |
| BfoI | RGCGCY | 2 cut(s) | 1852, 4241 |
| BfrI | CTTAAG | 2 cut(s) | 1346, 1844 |
| BfuAI | ACCTGC | 2 cut(s) | 1449, 2159 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1587 |
| BglII | AGATCT | 1 cut(s) | 3641 |
| BisI | GCNGC | 8 cut(s) | 169, 453, 728, 1611, 2031, 2034, 4236, 4302 |
| BlsI | GCNGC | 8 cut(s) | 170, 454, 729, 1612, 2032, 2035, 4237, 4303 |
| BmcAI | AGTACT | 2 cut(s) | 3574, 3790 |
| Bme1390I | CCNGG | 7 cut(s) | 377, 744, 1119, 2409, 2508, 4802, 4949 |
| Bme18I | GGWCC | 3 cut(s) | 737, 1799, 2367 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2812 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmrFI | CCNGG | 7 cut(s) | 377, 744, 1119, 2409, 2508, 4802, 4949 |
| BmrI | ACTGGG | 1 cut(s) | 2324 |
| BmuI | ACTGGG | 1 cut(s) | 2324 |
| BpiI | GAAGAC | 9 cut(s) | 1670, 1711, 2660, 3360, 3579, 3795, 4010, 4032, 4449 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2836, 2868 |
| BpmI | CTGGAG | 2 cut(s) | 2430, 3033 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1606, 2962, 4257, 4305, 4635 |
| Bpu14I | TTCGAA | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 2 cut(s) | 266, 4715 |
| BpuMI | CCSGG | 1 cut(s) | 744 |
| Bsa29I | ATCGAT | 1 cut(s) | 2429 |
| BsaAI | YACGTR | 1 cut(s) | 5056 |
| BsaBI | GATNNNNATC | 3 cut(s) | 483, 2490, 4770 |
| BsaHI | GRCGYC | 2 cut(s) | 2087, 4238 |
| BsaI | GGTCTC | 3 cut(s) | 1108, 2820, 3183 |
| BsaJI | CCNNGG | 8 cut(s) | 255, 1434, 2380, 2809, 3718, 4227, 4574, 4800 |
| BsaWI | WCCGGW | 1 cut(s) | 2242 |
| Bse118I | RCCGGY | 1 cut(s) | 26 |
| Bse1I | ACTGG | 7 cut(s) | 754, 1355, 1597, 2330, 3361, 3667, 3796 |
| Bse3DI | GCAATG | 3 cut(s) | 174, 4150, 4177 |
| Bse8I | GATNNNNATC | 3 cut(s) | 483, 2490, 4770 |
| BseBI | CCWGG | 6 cut(s) | 377, 1119, 2409, 2508, 4802, 4949 |
| BseCI | ATCGAT | 1 cut(s) | 2429 |
| BseDI | CCNNGG | 8 cut(s) | 255, 1434, 2380, 2809, 3718, 4227, 4574, 4800 |
| BseJI | GATNNNNATC | 3 cut(s) | 483, 2490, 4770 |
| BseMI | GCAATG | 3 cut(s) | 174, 4150, 4177 |
| BseNI | ACTGG | 7 cut(s) | 754, 1355, 1597, 2330, 3361, 3667, 3796 |
| BseRI | GAGGAG | 8 cut(s) | 272, 1379, 1457, 2279, 3030, 3260, 4404, 4652 |
| BseSI | GKGCMC | 3 cut(s) | 1583, 1707, 2253 |
| BseXI | GCAGC | 6 cut(s) | 439, 714, 1622, 2020, 2042, 4288 |
| BseYI | CCCAGC | 3 cut(s) | 206, 301, 2304 |
| BsgI | GTGCAG | 3 cut(s) | 1278, 1296, 4674 |
| Bsh1236I | CGCG | 1 cut(s) | 1401 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3064 |
| BshNI | GGYRCC | 1 cut(s) | 4237 |
| BshVI | ATCGAT | 1 cut(s) | 2429 |
| BsiEI | CGRYCG | 1 cut(s) | 3064 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1214, 1707, 2253, 4141 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BsiSI | CCGG | 3 cut(s) | 27, 744, 2243 |
| BslFI | GGGAC | 7 cut(s) | 74, 477, 526, 2091, 2380, 2872, 4783 |
| BsmAI | GTCTC | 8 cut(s) | 524, 1108, 2820, 2943, 3183, 3311, 3530, 3983 |
| BsmFI | GGGAC | 7 cut(s) | 74, 477, 526, 2091, 2380, 2872, 4783 |
| BsmI | GAATGC | 2 cut(s) | 190, 996 |
| Bso31I | GGTCTC | 3 cut(s) | 1108, 2820, 3183 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp119I | TTCGAA | 1 cut(s) | 652 |
| Bsp120I | GGGCCC | 1 cut(s) | 1579 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1214, 1583, 1707, 2253, 4141 |
| Bsp1407I | TGTACA | 1 cut(s) | 2613 |
| Bsp19I | CCATGG | 2 cut(s) | 2809, 4227 |
| BspDI | ATCGAT | 1 cut(s) | 2429 |
| BspFNI | CGCG | 1 cut(s) | 1401 |
| BspHI | TCATGA | 2 cut(s) | 1000, 1681 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspMI | ACCTGC | 2 cut(s) | 1449, 2159 |
| BspQI | GCTCTTC | 2 cut(s) | 649, 2995 |
| BspT104I | TTCGAA | 1 cut(s) | 652 |
| BspT107I | GGYRCC | 1 cut(s) | 4237 |
| BspTI | CTTAAG | 2 cut(s) | 1346, 1844 |
| BspTNI | GGTCTC | 3 cut(s) | 1108, 2820, 3183 |
| BsrBI | CCGCTC | 1 cut(s) | 168 |
| BsrDI | GCAATG | 3 cut(s) | 174, 4150, 4177 |
| BsrFI | RCCGGY | 1 cut(s) | 26 |
| BsrGI | TGTACA | 1 cut(s) | 2613 |
| BsrI | ACTGG | 7 cut(s) | 754, 1355, 1597, 2330, 3361, 3667, 3796 |
| BssAI | RCCGGY | 1 cut(s) | 26 |
| BssECI | CCNNGG | 8 cut(s) | 255, 1434, 2380, 2809, 3718, 4227, 4574, 4800 |
| BssNI | GRCGYC | 2 cut(s) | 2087, 4238 |
| BssSI | CACGAG | 2 cut(s) | 1254, 2742 |
| BssT1I | CCWWGG | 5 cut(s) | 1434, 2380, 2809, 4227, 4574 |
| Bst2BI | CACGAG | 2 cut(s) | 1254, 2742 |
| Bst2UI | CCWGG | 6 cut(s) | 377, 1119, 2409, 2508, 4802, 4949 |
| Bst4CI | ACNGT | 8 cut(s) | 118, 442, 836, 1998, 2158, 2606, 3845, 4025 |
| Bst6I | CTCTTC | 4 cut(s) | 649, 2837, 2995, 4835 |
| BstACI | GRCGYC | 2 cut(s) | 2087, 4238 |
| BstAFI | CTTAAG | 2 cut(s) | 1346, 1844 |
| BstAUI | TGTACA | 1 cut(s) | 2613 |
| BstBAI | YACGTR | 1 cut(s) | 5056 |
| BstBI | TTCGAA | 1 cut(s) | 652 |
| BstDSI | CCRYGG | 2 cut(s) | 2809, 4227 |
| BstEII | GGTNACC | 2 cut(s) | 221, 2955 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1574, 4935 |
| BstFNI | CGCG | 1 cut(s) | 1401 |
| BstH2I | RGCGCY | 2 cut(s) | 1852, 4241 |
| BstHHI | GCGC | 3 cut(s) | 1403, 1851, 4240 |
| BstMAI | GTCTC | 8 cut(s) | 524, 1108, 2820, 2943, 3183, 3311, 3530, 3983 |
| BstMCI | CGRYCG | 1 cut(s) | 3064 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 185, 987, 1256, 1587, 1610, 1629, 2039, 5027 |
| BstNI | CCWGG | 6 cut(s) | 377, 1119, 2409, 2508, 4802, 4949 |
| BstNSI | RCATGY | 7 cut(s) | 373, 716, 727, 929, 2951, 3227, 3739 |
| BstPI | GGTNACC | 2 cut(s) | 221, 2955 |
| BstSCI | CCNGG | 7 cut(s) | 375, 742, 1117, 2407, 2506, 4800, 4947 |
| BstSFI | CTRYAG | 5 cut(s) | 453, 1172, 1267, 2175, 4540 |
| BstSLI | GKGCMC | 3 cut(s) | 1583, 1707, 2253 |
| BstUI | CGCG | 1 cut(s) | 1401 |
| BstV1I | GCAGC | 6 cut(s) | 439, 714, 1622, 2020, 2042, 4288 |
| BstV2I | GAAGAC | 9 cut(s) | 1670, 1711, 2660, 3360, 3579, 3795, 4010, 4032, 4449 |
| BstX2I | RGATCY | 6 cut(s) | 799, 2485, 3641, 4951, 4990, 5146 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5138 |
| BstYI | RGATCY | 6 cut(s) | 799, 2485, 3641, 4951, 4990, 5146 |
| Bsu15I | ATCGAT | 1 cut(s) | 2429 |
| BsuTUI | ATCGAT | 1 cut(s) | 2429 |
| BtgI | CCRYGG | 2 cut(s) | 2809, 4227 |
| BtsI | GCAGTG | 1 cut(s) | 275 |
| BtsIMutI | CAGTG | 4 cut(s) | 275, 1362, 1590, 3753 |
| BveI | ACCTGC | 2 cut(s) | 1449, 2159 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2036, 2174, 2489 |
| CciI | TCATGA | 2 cut(s) | 1000, 1681 |
| CfoI | GCGC | 3 cut(s) | 1403, 1851, 4240 |
| Cfr10I | RCCGGY | 1 cut(s) | 26 |
| ClaI | ATCGAT | 1 cut(s) | 2429 |
| CseI | GACGC | 1 cut(s) | 341 |
| CsiI | ACCWGGT | 1 cut(s) | 375 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4546, 4581 |
| DinI | GGCGCC | 1 cut(s) | 4239 |
| DraIII | CACNNNGTG | 1 cut(s) | 2912 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1332 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2812 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1332 |
| EaeI | YGGCCR | 2 cut(s) | 169, 5074 |
| Eam1104I | CTCTTC | 4 cut(s) | 649, 2837, 2995, 4835 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2812 |
| EarI | CTCTTC | 4 cut(s) | 649, 2837, 2995, 4835 |
| EciI | GGCGGA | 1 cut(s) | 240 |
| Ecl136II | GAGCTC | 2 cut(s) | 1212, 4139 |
| Eco130I | CCWWGG | 5 cut(s) | 1434, 2380, 2809, 4227, 4574 |
| Eco147I | AGGCCT | 1 cut(s) | 1149 |
| Eco24I | GRGCYC | 3 cut(s) | 1214, 1583, 4141 |
| Eco31I | GGTCTC | 3 cut(s) | 1108, 2820, 3183 |
| Eco32I | GATATC | 3 cut(s) | 3863, 4132, 4162 |
| Eco47I | GGWCC | 3 cut(s) | 737, 1799, 2367 |
| Eco47III | AGCGCT | 1 cut(s) | 1850 |
| Eco53kI | GAGCTC | 2 cut(s) | 1212, 4139 |
| Eco57I | CTGAAG | 6 cut(s) | 843, 2244, 2672, 2781, 3027, 4859 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| Eco91I | GGTNACC | 2 cut(s) | 221, 2955 |
| EcoICRI | GAGCTC | 2 cut(s) | 1212, 4139 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1574, 4935 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1579, 1580, 1837, 2367, 4915 |
| EcoO65I | GGTNACC | 2 cut(s) | 221, 2955 |
| EcoRI | GAATTC | 1 cut(s) | 1904 |
| EcoRII | CCWGG | 6 cut(s) | 375, 1117, 2407, 2506, 4800, 4947 |
| EcoRV | GATATC | 3 cut(s) | 3863, 4132, 4162 |
| EcoT14I | CCWWGG | 5 cut(s) | 1434, 2380, 2809, 4227, 4574 |
| EcoT22I | ATGCAT | 4 cut(s) | 6, 3306, 3525, 3960 |
| EcoT38I | GRGCYC | 3 cut(s) | 1214, 1583, 4141 |
| EgeI | GGCGCC | 1 cut(s) | 4239 |
| EheI | GGCGCC | 1 cut(s) | 4239 |
| ErhI | CCWWGG | 5 cut(s) | 1434, 2380, 2809, 4227, 4574 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2532, 2564 |
| FaqI | GGGAC | 7 cut(s) | 74, 477, 526, 2091, 2380, 2872, 4783 |
| FauI | CCCGC | 1 cut(s) | 31 |
| FauNDI | CATATG | 4 cut(s) | 6, 2149, 3363, 4472 |
| FbaI | TGATCA | 3 cut(s) | 2196, 2491, 4900 |
| FblI | GTMKAC | 5 cut(s) | 330, 3418, 3634, 3853, 4539 |
| Fnu4HI | GCNGC | 8 cut(s) | 169, 453, 728, 1611, 2031, 2034, 4236, 4302 |
| FriOI | GRGCYC | 3 cut(s) | 1214, 1583, 4141 |
| Fsp4HI | GCNGC | 8 cut(s) | 169, 453, 728, 1611, 2031, 2034, 4236, 4302 |
| FspBI | CTAG | 9 cut(s) | 1574, 1584, 1893, 1991, 2838, 3576, 4487, 4535, 4613 |
| GlaI | GCGC | 3 cut(s) | 1402, 1850, 4239 |
| GluI | GCNGC | 8 cut(s) | 169, 453, 728, 1611, 2031, 2034, 4236, 4302 |
| GsaI | CCCAGC | 3 cut(s) | 210, 305, 2308 |
| GsuI | CTGGAG | 2 cut(s) | 2430, 3033 |
| HaeII | RGCGCY | 2 cut(s) | 1852, 4241 |
| HapII | CCGG | 3 cut(s) | 27, 744, 2243 |
| HgaI | GACGC | 1 cut(s) | 341 |
| HhaI | GCGC | 3 cut(s) | 1403, 1851, 4240 |
| Hin1I | GRCGYC | 2 cut(s) | 2087, 4238 |
| Hin6I | GCGC | 3 cut(s) | 1401, 1849, 4238 |
| HinP1I | GCGC | 3 cut(s) | 1401, 1849, 4238 |
| HincII | GTYRAC | 2 cut(s) | 331, 2128 |
| HindII | GTYRAC | 2 cut(s) | 331, 2128 |
| HindIII | AAGCTT | 5 cut(s) | 1728, 1871, 2594, 4361, 4505 |
| HpaII | CCGG | 3 cut(s) | 27, 744, 2243 |
| Hpy99I | CGWCG | 5 cut(s) | 122, 335, 350, 1401, 2092 |
| HpyCH4III | ACNGT | 8 cut(s) | 118, 442, 836, 1998, 2158, 2606, 3845, 4025 |
| HpyCH4IV | ACGT | 9 cut(s) | 132, 432, 515, 571, 840, 1716, 2087, 3442, 5055 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 185, 987, 1256, 1587, 1610, 1629, 2039, 5027 |
| HpySE526I | ACGT | 9 cut(s) | 132, 432, 515, 571, 840, 1716, 2087, 3442, 5055 |
| Hsp92I | GRCGYC | 2 cut(s) | 2087, 4238 |
| HspAI | GCGC | 3 cut(s) | 1401, 1849, 4238 |
| KasI | GGCGCC | 1 cut(s) | 4237 |
| KroI | GCCGGC | 1 cut(s) | 26 |
| KroNI | GCCGGC | 1 cut(s) | 28 |
| Ksp22I | TGATCA | 3 cut(s) | 2196, 2491, 4900 |
| LguI | GCTCTTC | 2 cut(s) | 649, 2995 |
| LmnI | GCTCC | 9 cut(s) | 868, 1045, 1228, 1430, 1444, 1528, 2224, 2266, 2411 |
| Lsp1109I | GCAGC | 6 cut(s) | 439, 714, 1622, 2020, 2042, 4288 |
| MabI | ACCWGGT | 1 cut(s) | 375 |
| MaeI | CTAG | 9 cut(s) | 1574, 1584, 1893, 1991, 2838, 3576, 4487, 4535, 4613 |
| MaeII | ACGT | 9 cut(s) | 132, 432, 515, 571, 840, 1716, 2087, 3442, 5055 |
| MbiI | CCGCTC | 1 cut(s) | 168 |
| MfeI | CAATTG | 1 cut(s) | 1742 |
| MflI | RGATCY | 6 cut(s) | 799, 2485, 3641, 4951, 4990, 5146 |
| MhlI | GDGCHC | 5 cut(s) | 1214, 1583, 1707, 2253, 4141 |
| MlsI | TGGCCA | 1 cut(s) | 5076 |
| MluNI | TGGCCA | 1 cut(s) | 5076 |
| Mly113I | GGCGCC | 1 cut(s) | 4238 |
| MlyI | GAGTC | 6 cut(s) | 26, 1342, 1673, 1907, 2854, 4253 |
| MmeI | TCCRAC | 6 cut(s) | 123, 810, 2729, 3044, 3079, 4654 |
| Mox20I | TGGCCA | 1 cut(s) | 5076 |
| Mph1103I | ATGCAT | 4 cut(s) | 6, 3306, 3525, 3960 |
| MreI | CGCCGGCG | 1 cut(s) | 26 |
| MroNI | GCCGGC | 1 cut(s) | 26 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4108, 4870 |
| MscI | TGGCCA | 1 cut(s) | 5076 |
| MslI | CAYNNNNRTG | 6 cut(s) | 909, 1503, 2235, 2808, 3228, 3663 |
| Msp20I | TGGCCA | 1 cut(s) | 5076 |
| MspA1I | CMGCKG | 3 cut(s) | 105, 1661, 2033 |
| MspCI | CTTAAG | 2 cut(s) | 1346, 1844 |
| MspI | CCGG | 3 cut(s) | 27, 744, 2243 |
| MspR9I | CCNGG | 7 cut(s) | 377, 744, 1119, 2409, 2508, 4802, 4949 |
| MunI | CAATTG | 1 cut(s) | 1742 |
| Mva1269I | GAATGC | 2 cut(s) | 190, 996 |
| MvaI | CCWGG | 6 cut(s) | 377, 1119, 2409, 2508, 4802, 4949 |
| MvnI | CGCG | 1 cut(s) | 1401 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 185, 987, 1256, 1587, 1610, 1629, 2039, 5027 |
| NaeI | GCCGGC | 1 cut(s) | 28 |
| NarI | GGCGCC | 1 cut(s) | 4238 |
| NciI | CCSGG | 1 cut(s) | 744 |
| NcoI | CCATGG | 2 cut(s) | 2809, 4227 |
| NdeI | CATATG | 4 cut(s) | 6, 2149, 3363, 4472 |
| NgoMIV | GCCGGC | 1 cut(s) | 26 |
| NmeAIII | GCCGAG | 2 cut(s) | 748, 3743 |
| NmuCI | GTSAC | 5 cut(s) | 221, 235, 1737, 2152, 2955 |
| NsiI | ATGCAT | 4 cut(s) | 6, 3306, 3525, 3960 |
| NspI | RCATGY | 7 cut(s) | 373, 716, 727, 929, 2951, 3227, 3739 |
| NspV | TTCGAA | 1 cut(s) | 652 |
| PaeI | GCATGC | 3 cut(s) | 727, 2951, 3739 |
| PagI | TCATGA | 2 cut(s) | 1000, 1681 |
| PaqCI | CACCTGC | 1 cut(s) | 2159 |
| PceI | AGGCCT | 1 cut(s) | 1149 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PciSI | GCTCTTC | 2 cut(s) | 649, 2995 |
| PctI | GAATGC | 2 cut(s) | 190, 996 |
| PdiI | GCCGGC | 1 cut(s) | 28 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4108, 4870 |
| PfeI | GAWTC | 9 cut(s) | 1177, 2431, 2830, 3508, 4280, 4383, 4408, 4483, 4784 |
| PflFI | GACNNNGTC | 1 cut(s) | 2659 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2381, 4079 |
| PfoI | TCCNGGA | 1 cut(s) | 4947 |
| PkrI | GCNGC | 8 cut(s) | 170, 454, 729, 1612, 2032, 2035, 4237, 4303 |
| PleI | GAGTC | 6 cut(s) | 26, 1341, 1672, 1907, 2853, 4252 |
| PluTI | GGCGCC | 1 cut(s) | 4241 |
| PpsI | GAGTC | 6 cut(s) | 26, 1341, 1672, 1907, 2853, 4252 |
| Ppu21I | YACGTR | 1 cut(s) | 5056 |
| PpuMI | RGGWCCY | 1 cut(s) | 2367 |
| PscI | ACATGT | 1 cut(s) | 369 |
| PsiI | TTATAA | 2 cut(s) | 4620, 4911 |
| Psp124BI | GAGCTC | 2 cut(s) | 1214, 4141 |
| Psp5II | RGGWCCY | 1 cut(s) | 2367 |
| Psp6I | CCWGG | 6 cut(s) | 375, 1117, 2407, 2506, 4800, 4947 |
| PspEI | GGTNACC | 2 cut(s) | 221, 2955 |
| PspFI | CCCAGC | 3 cut(s) | 206, 301, 2304 |
| PspGI | CCWGG | 6 cut(s) | 375, 1117, 2407, 2506, 4800, 4947 |
| PspOMI | GGGCCC | 1 cut(s) | 1579 |
| PspPPI | RGGWCCY | 1 cut(s) | 2367 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2036, 2174, 2489 |
| PsuI | RGATCY | 6 cut(s) | 799, 2485, 3641, 4951, 4990, 5146 |
| PsyI | GACNNNGTC | 1 cut(s) | 2659 |
| PvuII | CAGCTG | 2 cut(s) | 1661, 2033 |
| RseI | CAYNNNNRTG | 6 cut(s) | 909, 1503, 2235, 2808, 3228, 3663 |
| SacI | GAGCTC | 2 cut(s) | 1214, 4141 |
| SalI | GTCGAC | 1 cut(s) | 329 |
| SapI | GCTCTTC | 2 cut(s) | 649, 2995 |
| SatI | GCNGC | 8 cut(s) | 169, 453, 728, 1611, 2031, 2034, 4236, 4302 |
| ScaI | AGTACT | 2 cut(s) | 3574, 3790 |
| SchI | GAGTC | 6 cut(s) | 26, 1342, 1673, 1907, 2854, 4253 |
| ScrFI | CCNGG | 7 cut(s) | 377, 744, 1119, 2409, 2508, 4802, 4949 |
| SduI | GDGCHC | 5 cut(s) | 1214, 1583, 1707, 2253, 4141 |
| SexAI | ACCWGGT | 1 cut(s) | 375 |
| SfcI | CTRYAG | 5 cut(s) | 453, 1172, 1267, 2175, 4540 |
| SfoI | GGCGCC | 1 cut(s) | 4239 |
| SfuI | TTCGAA | 1 cut(s) | 652 |
| SgrAI | CRCCGGYG | 1 cut(s) | 26 |
| SinI | GGWCC | 3 cut(s) | 737, 1799, 2367 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 909, 1503, 2235, 2808, 3228, 3663 |
| SmlI | CTYRAG | 4 cut(s) | 281, 1346, 1844, 4694 |
| SmoI | CTYRAG | 4 cut(s) | 281, 1346, 1844, 4694 |
| SpeI | ACTAGT | 3 cut(s) | 1892, 3575, 4534 |
| SphI | GCATGC | 3 cut(s) | 727, 2951, 3739 |
| SseBI | AGGCCT | 1 cut(s) | 1149 |
| SspDI | GGCGCC | 1 cut(s) | 4237 |
| SspI | AATATT | 4 cut(s) | 936, 1009, 1060, 1372 |
| SspMI | CTAG | 9 cut(s) | 1574, 1584, 1893, 1991, 2838, 3576, 4487, 4535, 4613 |
| SstI | GAGCTC | 2 cut(s) | 1214, 4141 |
| StuI | AGGCCT | 1 cut(s) | 1149 |
| StyD4I | CCNGG | 7 cut(s) | 375, 742, 1117, 2407, 2506, 4800, 4947 |
| StyI | CCWWGG | 5 cut(s) | 1434, 2380, 2809, 4227, 4574 |
| TaaI | ACNGT | 8 cut(s) | 118, 442, 836, 1998, 2158, 2606, 3845, 4025 |
| TaiI | ACGT | 9 cut(s) | 135, 435, 518, 574, 843, 1719, 2090, 3445, 5058 |
| TaqII | GACCGA | 1 cut(s) | 3050 |
| TatI | WGTACW | 8 cut(s) | 366, 673, 2613, 2800, 3200, 3572, 3788, 4778 |
| TauI | GCSGC | 2 cut(s) | 171, 4238 |
| TfiI | GAWTC | 9 cut(s) | 1177, 2431, 2830, 3508, 4280, 4383, 4408, 4483, 4784 |
| TscAI | CASTG | 4 cut(s) | 282, 1362, 1597, 3760 |
| TseFI | GTSAC | 5 cut(s) | 221, 235, 1737, 2152, 2955 |
| TseI | GCWGC | 6 cut(s) | 452, 727, 1610, 2030, 2033, 4301 |
| Tsp45I | GTSAC | 5 cut(s) | 221, 235, 1737, 2152, 2955 |
| TspGWI | ACGGA | 4 cut(s) | 2086, 3128, 3542, 4116 |
| TspRI | CASTG | 4 cut(s) | 282, 1362, 1597, 3760 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2659 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2381, 4079 |
| Vha464I | CTTAAG | 2 cut(s) | 1346, 1844 |
| VneI | GTGCAC | 2 cut(s) | 1703, 2249 |
| VpaK11BI | GGWCC | 3 cut(s) | 737, 1799, 2367 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1574, 4935 |
| XapI | RAATTY | 8 cut(s) | 783, 1137, 1185, 1898, 1904, 2755, 3119, 5110 |
| XbaI | TCTAGA | 1 cut(s) | 1573 |
| XceI | RCATGY | 7 cut(s) | 373, 716, 727, 929, 2951, 3227, 3739 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2570 |
| XmiI | GTMKAC | 5 cut(s) | 330, 3418, 3634, 3853, 4539 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4108, 4870 |
| XspI | CTAG | 9 cut(s) | 1574, 1584, 1893, 1991, 2838, 3576, 4487, 4535, 4613 |
| ZraI | GACGTC | 1 cut(s) | 2088 |
| ZrmI | AGTACT | 2 cut(s) | 3574, 3790 |
| Zsp2I | ATGCAT | 4 cut(s) | 6, 3306, 3525, 3960 |