RchiOBHm_Chr3g0471901

catalytic domain of ctd-like phosphatases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000875
Physical Location & Seq
Reverse (-)
17786978 .. 17791222
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43764

Sequence Viewer

Length: 1038 bp
ATGTGGTGCTGTAGAAGATTCCCACGTTGTGTTACATTCTTCTGTGGTGATGAACGCCTTTTTTACCTTGGAATCTGTACTCCAGCTGATCTTAACAATGATAACAAAGAAACAGGAAGTGACTCTGGCCTTTCACTAGAGAAGCTAAGTCTCCAACCACGAAAGAAGCTTCTTGTTCTCAGTCTCATTGGGCTTCTACTCTACCTGGTTTACAGGAAAAACAAGGCTAAATTTCCAACTACTCGAGATCCTGATGCCAGATTTTCAAGTCAACTGGTTTTCAAAAGACCTTTTGCTGCAGAGTTTGTGGAATTCTGCCTTGAACGATTTGAAGTGGCAAAGAAAAGTCAAAGGTGTTTTGAATCGTGTAATGGGAAGGAGCCAAGGAGGCAGAGAAAGAAACTGTCAGTTATATTTGCTCAAGACGATTGCACTTATTCTGGGTCCATGTCCATGGAGGATAAAGAGAAGCCCTTGTTTCTCAAAGAATTGAAGGATTTGTGGAAATATCTGTTATATTCTGAACCTGATACACTGTTGATCGATGATCAACCTTACAAGGCCTTGCTCAATCCTCCTTACATAGGGATTTTCCTCGAATCCTACAATCCTGACAATGCTGGTGATAATGCATTAGCTGCTTTTGAACTATGCATCCTAAATCCGAAAGGAGAACTGGGGGTGTACTTGGATGACCTTGCAGCTGCAGATAATGTTCAGGTTTATGTGAAAAAGAACCCATTTGGAGTGCCTGCAATTTCATCTGGCCATCCTGATTGGAACTTATACCCTGATGTCATTCAACGACTTAAGGGAGAAAGCGAGAAAGCAAGTACATCTCAGCAGCTGGATTCTCGAGTCTTCCTAGTATCAGCTGGATTCAAACTTTCTTGTTGTATTCACTTGGAATTCAATTTCTGCTTTCGTTTTCTTTCGTTTTTTTTCCTCTTTTTTTTTTTGGTACTAGCTACCCTTGTTGATTATATCAGCCCAGCTATTACAGCCAATGCTAGTAGTTATTTTACATTCATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

345

Amino Acids

39.51

Weight (kDa)

7.38

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 56 - 213 7.5e-09 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 3 cut(s) 230, 311, 908
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 4 cut(s) 79, 686, 835, 963
AfiI CCNNNNNNNGG 1 cut(s) 584
AflII CTTAAG 1 cut(s) 809
AjnI CCWGG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 9 cut(s) 86, 145, 169, 638, 704, 847, 875, 968, 995
AluI AGCT 9 cut(s) 86, 145, 169, 638, 704, 847, 875, 968, 995
Alw26I GTCTC 2 cut(s) 155, 188
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 2 cut(s) 243, 855
AoxI GGCC 3 cut(s) 127, 561, 766
ApeKI GCWGC 5 cut(s) 296, 638, 701, 704, 844
ApoI RAATTY 3 cut(s) 230, 311, 908
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 59, 635
AvaI CYCGRG 2 cut(s) 243, 855
AvaII GGWCC 1 cut(s) 444
BalI TGGCCA 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 853
BbvI GCAGC 5 cut(s) 283, 625, 691, 713, 856
BccI CCATC 1 cut(s) 777
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 155, 188
BfaI CTAG 4 cut(s) 137, 866, 965, 1011
BfmI CTRYAG 3 cut(s) 10, 297, 705
BfrI CTTAAG 1 cut(s) 809
BglI GCCNNNNNGGC 1 cut(s) 388
BisI GCNGC 5 cut(s) 297, 639, 702, 705, 845
BlsI GCNGC 5 cut(s) 298, 640, 703, 706, 846
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 444
BmeT110I CYCGRG 2 cut(s) 243, 855
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 381, 445
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 244, 663
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 853
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 67, 383, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 279, 681
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 67, 383, 453
BseGI GGATG 3 cut(s) 654, 697, 769
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 193, 854
BseNI ACTGG 2 cut(s) 279, 681
BseXI GCAGC 5 cut(s) 283, 625, 691, 713, 856
BseYI CCCAGC 1 cut(s) 991
BshFI GGCC 3 cut(s) 129, 563, 768
BshVI ATCGAT 1 cut(s) 543
BsiHKCI CYCGRG 2 cut(s) 243, 855
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 2 cut(s) 155, 188
BsnI GGCC 3 cut(s) 129, 563, 768
BsoBI CYCGRG 2 cut(s) 243, 855
Bsp143I GATC 4 cut(s) 88, 247, 540, 547
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 3 cut(s) 129, 563, 768
BspCNI CTCAG 2 cut(s) 192, 853
BspDI ATCGAT 1 cut(s) 543
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 2 cut(s) 381, 445
BspMAI CTGCAG 2 cut(s) 301, 709
BspPI GGATC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 809
BsrI ACTGG 2 cut(s) 279, 681
BssECI CCNNGG 3 cut(s) 67, 383, 453
BssMI GATC 4 cut(s) 88, 247, 540, 547
BssT1I CCWWGG 3 cut(s) 67, 383, 453
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 405, 537
BstAFI CTTAAG 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 3 cut(s) 146, 179, 840
BstDSI CCRYGG 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 582
BstF5I GGATG 3 cut(s) 654, 697, 769
BstKTI GATC 4 cut(s) 91, 250, 543, 550
BstMAI GTCTC 2 cut(s) 155, 188
BstMBI GATC 4 cut(s) 88, 247, 540, 547
BstMWI GCNNNNNNNGC 3 cut(s) 388, 638, 1001
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 3 cut(s) 10, 297, 705
BstV1I GCAGC 5 cut(s) 283, 625, 691, 713, 856
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 3 cut(s) 129, 563, 768
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 654, 697, 769
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 753
CaiI CAGNNNCTG 1 cut(s) 847
CciI TCATGA 1 cut(s) 1029
Cfr13I GGNCC 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 543
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 4 cut(s) 78, 685, 834, 962
CviAII CATG 3 cut(s) 448, 454, 1030
CviQI GTAC 4 cut(s) 78, 685, 834, 962
DdeI CTNAG 3 cut(s) 146, 179, 840
DpnI GATC 4 cut(s) 90, 249, 542, 549
DpnII GATC 4 cut(s) 88, 247, 540, 547
DraIII CACNNNGTG 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 766
Eco130I CCWWGG 3 cut(s) 67, 383, 453
Eco147I AGGCCT 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 444
Eco88I CYCGRG 2 cut(s) 243, 855
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoRI GAATTC 2 cut(s) 311, 908
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 3 cut(s) 67, 383, 453
EcoT22I ATGCAT 2 cut(s) 634, 656
ErhI CCWWGG 3 cut(s) 67, 383, 453
FaeI CATG 3 cut(s) 451, 457, 1033
FatI CATG 3 cut(s) 447, 453, 1029
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 297, 639, 702, 705, 845
FokI GGATG 3 cut(s) 641, 704, 756
Fsp4HI GCNGC 5 cut(s) 297, 639, 702, 705, 845
FspBI CTAG 4 cut(s) 137, 866, 965, 1011
GluI GCNGC 5 cut(s) 297, 639, 702, 705, 845
GsaI CCCAGC 1 cut(s) 995
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 129, 563, 768
Hin1II CATG 3 cut(s) 451, 457, 1033
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 8 cut(s) 18, 72, 122, 362, 599, 851, 858, 879
HphI GGTGA 2 cut(s) 59, 635
Hpy166II GTNNAC 3 cut(s) 211, 272, 685
Hpy188I TCNGA 2 cut(s) 523, 666
Hpy188III TCNNGA 7 cut(s) 245, 251, 422, 611, 773, 855, 1030
Hpy8I GTNNAC 3 cut(s) 211, 272, 685
HpyAV CCTTC 2 cut(s) 370, 487
HpyCH4III ACNGT 2 cut(s) 405, 537
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 7 cut(s) 299, 432, 632, 654, 701, 707, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 638, 1001
HpyF3I CTNAG 3 cut(s) 146, 179, 840
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 451, 457, 1033
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 88, 247, 540, 547
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 5 cut(s) 283, 625, 691, 713, 856
LweI GCATC 2 cut(s) 244, 663
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 4 cut(s) 137, 866, 965, 1011
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 31, 119
MalI GATC 4 cut(s) 90, 249, 542, 549
MboI GATC 4 cut(s) 88, 247, 540, 547
MboII GAAGA 3 cut(s) 27, 31, 853
MflI RGATCY 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 768
MluCI AATT 6 cut(s) 230, 311, 488, 756, 908, 913
MluNI TGGCCA 1 cut(s) 768
MlyI GAGTC 2 cut(s) 116, 867
MmeI TCCRAC 2 cut(s) 178, 260
MnlI CCTC 5 cut(s) 381, 451, 585, 605, 956
Mox20I TGGCCA 1 cut(s) 768
Mph1103I ATGCAT 2 cut(s) 634, 656
MscI TGGCCA 1 cut(s) 768
MseI TTAA 2 cut(s) 93, 810
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 768
MspA1I CMGCKG 4 cut(s) 86, 704, 847, 875
MspCI CTTAAG 1 cut(s) 809
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 388, 638, 1001
NcoI CCATGG 1 cut(s) 453
NdeII GATC 4 cut(s) 88, 247, 540, 547
NlaIII CATG 3 cut(s) 451, 457, 1033
NlaIV GGNNCC 2 cut(s) 381, 445
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 2 cut(s) 634, 656
PaeR7I CTCGAG 2 cut(s) 243, 855
PagI TCATGA 1 cut(s) 1029
PceI AGGCCT 1 cut(s) 563
PfeI GAWTC 6 cut(s) 18, 72, 362, 599, 851, 879
PkrI GCNGC 5 cut(s) 298, 640, 703, 706, 846
PleI GAGTC 2 cut(s) 116, 866
PpsI GAGTC 2 cut(s) 116, 866
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 991
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 381, 445
PspPI GGNCC 1 cut(s) 444
PstI CTGCAG 2 cut(s) 301, 709
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 247
PvuII CAGCTG 4 cut(s) 86, 704, 847, 875
RsaI GTAC 4 cut(s) 79, 686, 835, 963
RsaNI GTAC 4 cut(s) 78, 685, 834, 962
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 93, 810
SatI GCNGC 5 cut(s) 297, 639, 702, 705, 845
Sau3AI GATC 4 cut(s) 88, 247, 540, 547
Sau96I GGNCC 1 cut(s) 444
SchI GAGTC 2 cut(s) 116, 867
ScrFI CCNGG 1 cut(s) 206
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 2 cut(s) 244, 663
SfcI CTRYAG 3 cut(s) 10, 297, 705
Sfr274I CTCGAG 2 cut(s) 243, 855
SinI GGWCC 1 cut(s) 444
SlaI CTCGAG 2 cut(s) 243, 855
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 4 cut(s) 243, 420, 809, 855
SmoI CTYRAG 4 cut(s) 243, 420, 809, 855
Sse9I AATT 6 cut(s) 230, 311, 488, 756, 908, 913
SseBI AGGCCT 1 cut(s) 563
SspMI CTAG 4 cut(s) 137, 866, 965, 1011
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 3 cut(s) 67, 383, 453
TaaI ACNGT 2 cut(s) 405, 537
TaiI ACGT 1 cut(s) 28
TaqI TCGA 4 cut(s) 244, 543, 597, 856
TasI AATT 6 cut(s) 230, 311, 488, 756, 908, 913
TatI WGTACW 3 cut(s) 77, 684, 833
TfiI GAWTC 6 cut(s) 18, 72, 362, 599, 851, 879
Tru1I TTAA 2 cut(s) 93, 810
Tru9I TTAA 2 cut(s) 93, 810
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 5 cut(s) 296, 638, 701, 704, 844
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 66, 750, 1018
TspRI CASTG 1 cut(s) 540
Vha464I CTTAAG 1 cut(s) 809
VpaK11BI GGWCC 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 3 cut(s) 230, 311, 908
XhoI CTCGAG 2 cut(s) 243, 855
XspI CTAG 4 cut(s) 137, 866, 965, 1011
Zsp2I ATGCAT 2 cut(s) 634, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.