Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000875

Physical Location & Seq

Genomic Coordinates Reverse (-)

16010627 .. 16012903

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTGGTGCTGTAGAAGATTCCCACGTTGTGTTACATTCTTCTGTGGTGATGAACGCCTTTTTTACCTTGGAATCTGTACTCCAGCTGATCTTAACAATGATAACAAAGAAACAGGAAGTGACTCTGGCCTTTCACTAGAGAAGCTAAGTCTCCAACCACGAAAGAAGCTTCTTGTTCTCAGTCTCATTGGGCTTCTACTCTACCTGGTTTACAGGAAAAACAAGGCTAAATTTCCAACTACTCGAGATCCTGATGCCAGATTTTCAAGTCAACTGGTTTTCAAAAGACCTTTTGCTGCAGAGTTTGTGGAATTCTGCCTTGAACGATTTGAAGTGGCAGTATGGTCTTGTGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

8.92

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36540 AT2G36550
fragaria_vesca	FvH4_6g17650 FvH4_6g17650 FvH4_6g17680 FvH4_6g18040 FvH4_6g18040 FvH4_6g18041
malus_domestica	MD14G1013900.v1.1 MD14G1014000.v1.1 MD14G1014100.v1.1
prunus_persica	Prupe.7G119400_v2.0.a1 Prupe.7G119500_v2.0.a1 Prupe.7G119500_v2.0.a1
pyrus_communis	pycom14g01180 pycom14g01190
rosa_chinensis	RchiOBHm_Chr3g0471881 RchiOBHm_Chr3g0471901 RchiOBHm_Chr3g0472301 RchiOBHm_Chr3g0472311 RchiOBHm_Chr4g0442541
rosa_laevigata	RLG00000006003 RLG00000024088 RLG00000024089 RLG00000024121
rosa_multiflora	Rmu_sc0000627.1_g000001 Rmu_sc0002115.1_g000024 Rmu_sc0016565.1_g000001 Rmu_sc0036882.1_g000001 Rmu_ssc0000204.1_g000046
rosa_roxburghii	Rroxscaffold_5G00383360 Rroxscaffold_6G00409040 Rroxscaffold_6G00409080 Rroxscaffold_6G00409090 Rroxscaffold_6G00409430 Rroxscaffold_6G00409450 Rroxscaffold_6G00410650
rosa_rugosa	Rorug03G0111000 Rorug03G0111100 Rorug03G0121100 Rorug03G0123800 Rorug03G0123900 Rorug03G0124100 Rorug04G0341200
rosa_samantha	Rh3AG172300 Rh3AG172400 Rh3AG172500 Rh3AG176100 Rh3AG176200 Rh3BG197800 Rh3BG197900 Rh3BG201800 Rh3BG201900 Rh3CG188800 Rh3DG173400 Rh3DG173500 Rh3DG176400 Rh3DG176600 Rh4AG393500 Rh4BG406600 Rh4CG422000
rosa_wichuraiana	Rw3G015210 Rw3G016510 Rw3G016520 Rw3G016820 Rw4G034000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	230, 311
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	267, 283, 323, 332
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	86, 145, 169
AluI	AGCT	3 cut(s)	86, 145, 169
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	155, 188
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	2 cut(s)	230, 311
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	155, 188
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	10, 297
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	155, 188
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	88, 247
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	88, 247
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	146, 179
BstKTI	GATC	2 cut(s)	91, 250
BstMAI	GTCTC	2 cut(s)	155, 188
BstMBI	GATC	2 cut(s)	88, 247
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	10, 297
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	6 cut(s)	86, 129, 145, 169, 193, 227
CviKI_1	RGCY	6 cut(s)	86, 129, 145, 169, 193, 227
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	146, 179
DpnI	GATC	2 cut(s)	90, 249
DpnII	GATC	2 cut(s)	88, 247
DraIII	CACNNNGTG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
FaiI	YATR	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	18, 72, 122
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	211, 272
Hpy188III	TCNNGA	2 cut(s)	245, 251
Hpy8I	GTNNAC	2 cut(s)	211, 272
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	146, 179
HpySE526I	ACGT	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	88, 247
LpnPI	CCDG	9 cut(s)	96, 99, 111, 191, 199, 218, 260, 264, 271
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	31, 119
MalI	GATC	2 cut(s)	90, 249
MboI	GATC	2 cut(s)	88, 247
MboII	GAAGA	2 cut(s)	27, 31
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	230, 311
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	178, 260
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	88, 247
NmuCI	GTSAC	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	18, 72
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	88, 247
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	7 cut(s)	28, 69, 88, 147, 171, 207, 292
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	10, 297
Sfr274I	CTCGAG	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	2 cut(s)	230, 311
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	67
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	230, 311
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	18, 72
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	66
XapI	RAATTY	2 cut(s)	230, 311
XhoI	CTCGAG	1 cut(s)	243
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.