Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008717

Physical Location & Seq

Genomic Coordinates Forward (+)

15667065 .. 15670137

Gene Structure 3073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21980.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAGAGAGCTCGGCGATTCAAACGAGTCGCCACCGAAACCTCCAAGCGGCCAATACTCTCAAACCGACTCAAGGATGACGACGTCGAACCTCCGCCGAGGCAACCTTCCCATTCGTTGACCACTGCGGTGGTCAAACCCCGATCCGATTCATTCCCAATCCAAGAGATTCCTCCCCCTAAAATGACCATCTTGCCCTACACATTCTTCCAGATTGACGCCCTAGACCTCGCCCCTCGTTTGCTCGGCAAGTTCCTCCGGAGAGACGACGTTGTTCTTCAGATTACTGAGGTAGAAGCTTATAGACCAAATGATTCCGCTTGTCACGGCCGATTTGGCATAACACCAAGAACAGCTCCAGTGTTTGGACCAGGAGGGCATGCATATGTTTATCTTTGCTATGGTCTGCATTCGATGCTGAATGTTGTTGCTGACAAGGAGGGAGTCGGTGCGGCTGTTCTAATACGTGCTTGCGCTCCAATTAGTGGATTGGAGACCATACAGCAACGTCGAGGGCAGAAGACTAGTAAGCCTGTTCTCCTTACTGGACCAGGAAAGATCGGTCAAGCTCTGGGACTTTCTACAGAATGGTCTAACCACCCCCTCTACACTTCTGGTGGTCTGGAAATCTTAGATGGTCCCCAGCCTGAAAACATGTTGATTGGTCCGCGTGTAGGCATCAACTATGCTTTACCTGAGCATGTCAATGTGTTGTGGAGATTTGCAATTGCCGGTACCCCTTGGATAAGTGCTCCGAAGAACACTCTCAGGCCACCGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003905 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Pur_DNA_glyco

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

9.71

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_DNA_glyco	PF02245	69 - 206	1.3e-45	Methylpurine-DNA glycosylase (MPG)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12040 AT3G12040
fragaria_vesca	FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980
malus_domestica	MD14G1054600.v1.1
prunus_persica	Prupe.7G080200_v2.0.a1 Prupe.7G080200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479281
rosa_laevigata	RLG00000023587
rosa_multiflora	Rmu_sc0002978.1_g000001 Rmu_sc0015378.1_g000001 Rmu_sc0024699.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402440
rosa_rugosa	Rorug03G0174100
rosa_samantha	Rh3AG225100 Rh3BG257600 Rh3CG253300 Rh3DG249500
rosa_wichuraiana	Rw3G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
Acc65I	GGTACC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	734
AccB7I	CCANNNNNTGG	2 cut(s)	365, 485
AccII	CGCG	1 cut(s)	670
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	6 cut(s)	49, 95, 128, 318, 452, 668
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	50, 328
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	84, 219
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	5 cut(s)	48, 73, 365, 485, 674
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	370, 550
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	11, 299, 356, 569
AluI	AGCT	4 cut(s)	11, 299, 356, 569
Alw21I	GWGCWC	2 cut(s)	13, 754
Alw26I	GTCTC	2 cut(s)	258, 488
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	3 cut(s)	50, 328, 770
Asp718I	GGTACC	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	368, 548, 638, 665
AvaII	GGWCC	4 cut(s)	368, 548, 638, 665
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	13, 754
BccI	CCATC	2 cut(s)	197, 629
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	372, 552
BcoDI	GTCTC	2 cut(s)	258, 488
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	2 cut(s)	224, 525
BfmI	CTRYAG	1 cut(s)	582
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	50, 453
BlsI	GCNGC	2 cut(s)	51, 454
Bme1390I	CCNGG	2 cut(s)	372, 552
Bme18I	GGWCC	4 cut(s)	368, 548, 638, 665
BmgT120I	GGNCC	4 cut(s)	368, 548, 638, 665
BmiI	GGNNCC	2 cut(s)	640, 736
BmrFI	CCNGG	2 cut(s)	372, 552
BmsI	GCATC	2 cut(s)	405, 687
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	467
BsaHI	GRCGYC	2 cut(s)	84, 219
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	98, 740
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 73, 365, 485, 674
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	359, 550
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	372, 552
BseDI	CCNNGG	2 cut(s)	98, 740
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	5 cut(s)	48, 73, 365, 485, 674
BseMII	CTCAG	3 cut(s)	279, 687, 781
BseNI	ACTGG	2 cut(s)	359, 550
BseX3I	CGGCCG	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	52, 330, 772
BshNI	GGYRCC	1 cut(s)	734
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	13, 754
BsiSI	CCGG	2 cut(s)	259, 732
BslFI	GGGAC	2 cut(s)	588, 624
BslI	CCNNNNNNNGG	5 cut(s)	48, 73, 365, 485, 674
BsmAI	GTCTC	2 cut(s)	258, 488
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	588, 624
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	52, 330, 772
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	13, 754
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	143, 558
BspACI	CCGC	6 cut(s)	49, 95, 128, 318, 452, 668
BspANI	GGCC	3 cut(s)	52, 330, 772
BspCNI	CTCAG	3 cut(s)	280, 688, 780
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	640, 736
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	359, 550
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	2 cut(s)	98, 740
BssMI	GATC	2 cut(s)	143, 558
BssNI	GRCGYC	2 cut(s)	84, 219
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	372, 552
Bst4CI	ACNGT	1 cut(s)	777
BstACI	GRCGYC	2 cut(s)	84, 219
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	381, 472
BstDEI	CTNAG	4 cut(s)	288, 631, 696, 767
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	670
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	146, 561
BstMAI	GTCTC	2 cut(s)	258, 488
BstMBI	GATC	2 cut(s)	143, 558
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 415
BstNI	CCWGG	2 cut(s)	372, 552
BstNSI	RCATGY	3 cut(s)	383, 658, 704
BstSCI	CCNGG	2 cut(s)	370, 550
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	52, 330, 772
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 366
Cac8I	GCNNGC	2 cut(s)	381, 472
CfoI	GCGC	1 cut(s)	476
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	4 cut(s)	368, 548, 638, 665
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	3 cut(s)	380, 655, 701
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	4 cut(s)	288, 631, 696, 767
DpnI	GATC	2 cut(s)	145, 560
DpnII	GATC	2 cut(s)	143, 558
EaeI	YGGCCR	2 cut(s)	50, 328
EagI	CGGCCG	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	4 cut(s)	368, 548, 638, 665
Eco52I	CGGCCG	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	370, 550
EcoT14I	CCWWGG	1 cut(s)	740
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	740
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	383, 658, 704
FaqI	GGGAC	2 cut(s)	588, 624
FatI	CATG	3 cut(s)	379, 654, 700
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	50, 453
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	50, 453
FspBI	CTAG	2 cut(s)	224, 525
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	2 cut(s)	50, 453
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	52, 330, 772
HapII	CCGG	2 cut(s)	259, 732
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	476
Hin1I	GRCGYC	2 cut(s)	84, 219
Hin1II	CATG	3 cut(s)	383, 658, 704
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	7 cut(s)	18, 27, 69, 149, 169, 314, 444
HpaII	CCGG	2 cut(s)	259, 732
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	148, 282, 756
Hpy188III	TCNNGA	3 cut(s)	211, 259, 623
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	4 cut(s)	86, 89, 272, 513
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	777
HpyCH4IV	ACGT	4 cut(s)	84, 270, 466, 508
HpyCH4V	TGCA	3 cut(s)	383, 409, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 415
HpyF3I	CTNAG	4 cut(s)	288, 631, 696, 767
HpySE526I	ACGT	4 cut(s)	84, 270, 466, 508
Hsp92I	GRCGYC	2 cut(s)	84, 219
Hsp92II	CATG	3 cut(s)	383, 658, 704
HspAI	GCGC	1 cut(s)	474
Kpn2I	TCCGGA	1 cut(s)	258
KpnI	GGTACC	1 cut(s)	738
Kzo9I	GATC	2 cut(s)	143, 558
LmnI	GCTCC	3 cut(s)	361, 481, 757
LweI	GCATC	2 cut(s)	405, 687
MaeI	CTAG	2 cut(s)	224, 525
MaeII	ACGT	4 cut(s)	84, 270, 466, 508
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	145, 560
MboI	GATC	2 cut(s)	143, 558
MboII	GAAGA	5 cut(s)	16, 199, 269, 532, 769
MfeI	CAATTG	1 cut(s)	726
MhlI	GDGCHC	2 cut(s)	13, 754
MluCI	AATT	2 cut(s)	480, 726
MlyI	GAGTC	3 cut(s)	36, 63, 453
Mph1103I	ATGCAT	1 cut(s)	385
MroI	TCCGGA	1 cut(s)	258
MseI	TTAA	1 cut(s)	784
MslI	CAYNNNNRTG	3 cut(s)	128, 384, 705
MspI	CCGG	2 cut(s)	259, 732
MspR9I	CCNGG	2 cut(s)	372, 552
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	372, 552
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	336, 415
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	2 cut(s)	143, 558
NlaIII	CATG	3 cut(s)	383, 658, 704
NlaIV	GGNNCC	2 cut(s)	640, 736
NmeAIII	GCCGAG	2 cut(s)	123, 225
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	3 cut(s)	383, 658, 704
OliI	CACNNNNGTG	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	383
PciI	ACATGT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	18, 149, 169, 314
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	2 cut(s)	365, 485
PkrI	GCNGC	2 cut(s)	51, 454
PleI	GAGTC	3 cut(s)	35, 63, 452
PpsI	GAGTC	3 cut(s)	35, 63, 452
Ppu21I	YACGTR	1 cut(s)	467
PscI	ACATGT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	370, 550
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	2 cut(s)	370, 550
PspN4I	GGNNCC	2 cut(s)	640, 736
PspPI	GGNCC	4 cut(s)	368, 548, 638, 665
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	3 cut(s)	128, 384, 705
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	784
SatI	GCNGC	2 cut(s)	50, 453
Sau3AI	GATC	2 cut(s)	143, 558
Sau96I	GGNCC	4 cut(s)	368, 548, 638, 665
SchI	GAGTC	3 cut(s)	36, 63, 453
ScrFI	CCNGG	2 cut(s)	372, 552
SduI	GDGCHC	2 cut(s)	13, 754
SfaNI	GCATC	2 cut(s)	405, 687
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	4 cut(s)	368, 548, 638, 665
SmiMI	CAYNNNNRTG	3 cut(s)	128, 384, 705
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	524
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	2 cut(s)	480, 726
SsiI	CCGC	6 cut(s)	49, 95, 128, 318, 452, 668
SspMI	CTAG	2 cut(s)	224, 525
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	370, 550
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	777
TaiI	ACGT	4 cut(s)	87, 273, 469, 511
TaqI	TCGA	3 cut(s)	87, 413, 511
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	2 cut(s)	480, 726
TauI	GCSGC	2 cut(s)	52, 455
TfiI	GAWTC	4 cut(s)	18, 149, 169, 314
Tru1I	TTAA	1 cut(s)	784
Tru9I	TTAA	1 cut(s)	784
TscAI	CASTG	2 cut(s)	130, 366
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	17, 141
TspRI	CASTG	2 cut(s)	130, 366
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	2 cut(s)	365, 485
VpaK11BI	GGWCC	4 cut(s)	368, 548, 638, 665
XceI	RCATGY	3 cut(s)	383, 658, 704
XspI	CTAG	2 cut(s)	224, 525
ZraI	GACGTC	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.