Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015378.1

Orthogroup ID

OG0008717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1371

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

gattggagaccatacagcaacgtcgagggcagaagactagtaagcctgttctccttagtgggccaggaaagatcggtcaagccctgggactttctacagaatggtctaaccaccccctctacactcctggtggtctggaaatcttagatggtcccccgcctgagaacatgttgattggtccgcgtgtaggcatcaactatgctttgcctgagcacgtcaatgcgttgtggagatttgcaattgcaggtaccccttggataagtgctccgaagaacactctccggccaccgtcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003905 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Pur_DNA_glyco

Protein Analysis

98

Amino Acids

10.57

Weight (kDa)

9.69

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12040 AT3G12040
fragaria_vesca	FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980
malus_domestica	MD14G1054600.v1.1
prunus_persica	Prupe.7G080200_v2.0.a1 Prupe.7G080200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479281
rosa_laevigata	RLG00000023587
rosa_multiflora	Rmu_sc0002978.1_g000001 Rmu_sc0015378.1_g000001 Rmu_sc0024699.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402440
rosa_rugosa	Rorug03G0174100
rosa_samantha	Rh3AG225100 Rh3BG257600 Rh3CG253300 Rh3DG249500
rosa_wichuraiana	Rw3G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	157, 181
AcoI	YGGCCR	1 cut(s)	283
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	37
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	3 cut(s)	63, 83, 126
Alw21I	GWGCWC	2 cut(s)	215, 267
AoxI	GGCC	2 cut(s)	61, 283
Asp718I	GGTACC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	61, 151, 178
AvaII	GGWCC	2 cut(s)	151, 178
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	215, 267
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	3 cut(s)	65, 85, 128
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	235
Bme1390I	CCNGG	3 cut(s)	65, 85, 128
Bme18I	GGWCC	2 cut(s)	151, 178
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	61, 151, 178
BmiI	GGNNCC	2 cut(s)	153, 249
BmrFI	CCNGG	3 cut(s)	65, 85, 128
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	83, 84, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	3 cut(s)	65, 85, 128
BseDI	CCNNGG	3 cut(s)	83, 84, 253
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	152, 200
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	63, 285
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	215, 267
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	101, 137
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	101, 137
BsnI	GGCC	2 cut(s)	63, 285
Bsp1286I	GDGCHC	2 cut(s)	215, 267
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	2 cut(s)	157, 181
BspANI	GGCC	2 cut(s)	63, 285
BspCNI	CTCAG	2 cut(s)	153, 201
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	153, 249
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	83, 84, 253
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	3 cut(s)	65, 85, 128
Bst4CI	ACNGT	1 cut(s)	290
BstDEI	CTNAG	5 cut(s)	55, 144, 161, 209, 296
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstNI	CCWGG	3 cut(s)	65, 85, 128
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	63, 83, 126
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	63, 285
BtrI	CACGTC	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	61, 151, 178
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	45, 63, 82, 285
CviKI_1	RGCY	4 cut(s)	45, 63, 82, 285
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	5 cut(s)	55, 144, 161, 209, 296
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	151, 178
EcoRII	CCWGG	3 cut(s)	63, 83, 126
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	171
FaiI	YATR	3 cut(s)	13, 169, 200
FaqI	GGGAC	2 cut(s)	101, 137
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	63, 285
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	1 cut(s)	171
HpaII	CCGG	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	21, 215
HpyCH4V	TGCA	2 cut(s)	238, 244
HpyF3I	CTNAG	5 cut(s)	55, 144, 161, 209, 296
HpySE526I	ACGT	2 cut(s)	21, 215
Hsp92II	CATG	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	270
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	21, 215
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	2 cut(s)	45, 282
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	215, 267
MluCI	AATT	1 cut(s)	239
MnlI	CCTC	2 cut(s)	19, 127
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	65, 85, 128
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	3 cut(s)	65, 85, 128
MvnI	CGCG	1 cut(s)	183
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	2 cut(s)	153, 249
NspI	RCATGY	1 cut(s)	171
PasI	CCCWGGG	1 cut(s)	84
PciI	ACATGT	1 cut(s)	167
PscI	ACATGT	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	63, 83, 126
PspGI	CCWGG	3 cut(s)	63, 83, 126
PspN4I	GGNNCC	2 cut(s)	153, 249
PspPI	GGNCC	3 cut(s)	61, 151, 178
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	3 cut(s)	61, 151, 178
ScrFI	CCNGG	3 cut(s)	65, 85, 128
SduI	GDGCHC	2 cut(s)	215, 267
SetI	ASST	3 cut(s)	24, 218, 249
SfaNI	GCATC	1 cut(s)	200
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	151, 178
SmiMI	CAYNNNNRTG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	157, 181
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	63, 83, 126
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	24, 218
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	151, 178
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.