Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002978.1

Orthogroup ID

OG0008717

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 405

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgaagagagctccgcgattcaaacgagtcgccgctaaaacccccaagcggccaacactctcaaaccgacccagcgatgacgacgacgacgacgaccaaactccgccgagtcaaccccaacccgactcaactccaatcccagagattcctgcggataaaatgaccatcttgccctacacattcttccagattgacgccctagacctcgccccgcgtttgctcggcaagttccttcggagagacgacgttgttcttcagattaccgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003905 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Pur_DNA_glyco

Protein Analysis

89

Amino Acids

10.13

Weight (kDa)

5.36

Isoelectric Point (pI)

67.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12040 AT3G12040
fragaria_vesca	FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980
malus_domestica	MD14G1054600.v1.1
prunus_persica	Prupe.7G080200_v2.0.a1 Prupe.7G080200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479281
rosa_laevigata	RLG00000023587
rosa_multiflora	Rmu_sc0002978.1_g000001 Rmu_sc0015378.1_g000001 Rmu_sc0024699.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402440
rosa_rugosa	Rorug03G0174100
rosa_samantha	Rh3AG225100 Rh3BG257600 Rh3CG253300 Rh3DG249500
rosa_wichuraiana	Rw3G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	16, 214
AciI	CCGC	6 cut(s)	14, 33, 49, 104, 152, 212
AcoI	YGGCCR	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	33, 50
BlsI	GCNGC	2 cut(s)	34, 51
BsaHI	GRCGYC	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	2 cut(s)	16, 214
BshFI	GGCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	13
BspACI	CCGC	6 cut(s)	14, 33, 49, 104, 152, 212
BspANI	GGCC	1 cut(s)	52
BspFNI	CGCG	2 cut(s)	16, 214
BssNI	GRCGYC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	195
BstFNI	CGCG	2 cut(s)	16, 214
BstMAI	GTCTC	1 cut(s)	234
BstUI	CGCG	2 cut(s)	16, 214
BsuRI	GGCC	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	90
CseI	GACGC	1 cut(s)	203
CviJI	RGCY	2 cut(s)	11, 52
CviKI_1	RGCY	2 cut(s)	11, 52
EaeI	YGGCCR	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	234
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	33, 50
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	33, 50
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	33, 50
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	52
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	113
HindII	GTYRAC	1 cut(s)	113
HinfI	GANTC	5 cut(s)	18, 27, 109, 125, 145
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	237, 258
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	5 cut(s)	86, 89, 92, 95, 248
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	85, 153, 162, 200
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	246
MboII	GAAGA	3 cut(s)	16, 175, 245
MhlI	GDGCHC	1 cut(s)	13
MlyI	GAGTC	3 cut(s)	36, 118, 119
MnlI	CCTC	1 cut(s)	215
MvnI	CGCG	2 cut(s)	16, 214
NmeAIII	GCCGAG	2 cut(s)	132, 201
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 90
PfeI	GAWTC	2 cut(s)	18, 145
PkrI	GCNGC	2 cut(s)	34, 51
PleI	GAGTC	3 cut(s)	35, 117, 119
PpsI	GAGTC	3 cut(s)	35, 117, 119
Psp124BI	GAGCTC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	2 cut(s)	33, 50
SchI	GAGTC	3 cut(s)	36, 118, 119
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	3 cut(s)	13, 207, 249
SsiI	CCGC	6 cut(s)	14, 33, 49, 104, 152, 212
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	13
TaiI	ACGT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	35, 52
TfiI	GAWTC	2 cut(s)	18, 145
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.