Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008717

Physical Location & Seq

Genomic Coordinates Reverse (-)

11572482 .. 11575599

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTGATGCGAGACGAAATGAAGAGAACACGGCGATCCAAACAAGTCACCGCCAAATCCTCCAAGAGTCCAATTCCAGCCAACCGAATCAGGGATGAGGACGATGACGAAGCTTGGCCGAGTCAACCTTCCGAGTCATTGGCCGTTACGGTGGTCAATCCCAAGAAGTCCAAATCTCAACTCCAAACCAAACCCGGCTCAATCCCAGACAATCCACCCGAAGAAATGACGATCTTGCCCTTCACTTTCTTCCAAATTGACGCCCTAGACCTCGCCCCACGTTTGCTCGGCAAGTTTCTCAGGCGTGACGATGTTGTTCTTCAGATTACCGAGGTAGAAGCTTATAGGCAAAATGACTCGGCTTGTCATGGTCGATTTGGCGTAACTGCAAGAACAGCCCCCGTTTTTGGGCCTGGAGGAAATGCATATGTTTATCTTTGCTATGGCCTTCATACAATGCTGAATGTTGTTGCTGACAAGGAGGGAGTTGGAGCTGCCGTCCTAATACGTTCTTGTGCTCCAGTTAGTGGACTGGAGACCATTCAGCAGCGTCGAGGTCAGAAGACTGATAAGCCTGTGCTACTTAATGGACCTGGAAAGATCGGTCAAGCACTGGGACTTTCTACAGAATGGTCTAACCATCCCCTATATACTCCTGGTGGTCTGGAGATCTTAGACGGTCCGGAGCCTGAAAAGATGTTGATTGGTCCCCGTGTGGGCATCGAGTATGCTTTACCTGAGCATGTCAATGCATTGTGGAGATTTGCAGTTGCAGGCACATCTTGGATAAGTGCTCCTAAAAACACTCTCAGGCCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003905 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Pur_DNA_glyco

Protein Analysis

274

Amino Acids

29.95

Weight (kDa)

8.7

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12040 AT3G12040
fragaria_vesca	FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980
malus_domestica	MD14G1054600.v1.1
prunus_persica	Prupe.7G080200_v2.0.a1 Prupe.7G080200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479281
rosa_laevigata	RLG00000023587
rosa_multiflora	Rmu_sc0002978.1_g000001 Rmu_sc0015378.1_g000001 Rmu_sc0024699.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402440
rosa_rugosa	Rorug03G0174100
rosa_samantha	Rh3AG225100 Rh3BG257600 Rh3CG253300 Rh3DG249500
rosa_wichuraiana	Rw3G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	30
AcoI	YGGCCR	2 cut(s)	116, 141
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	5 cut(s)	91, 407, 408, 527, 716
AjnI	CCWGG	3 cut(s)	412, 592, 655
AluBI	AGCT	3 cut(s)	113, 341, 494
AluI	AGCT	3 cut(s)	113, 341, 494
Alw21I	GWGCWC	2 cut(s)	520, 796
Alw26I	GTCTC	2 cut(s)	6, 530
AlwI	GGATC	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	5 cut(s)	116, 141, 410, 445, 812
ApeKI	GCWGC	2 cut(s)	494, 547
AspS9I	GGNCC	4 cut(s)	410, 590, 680, 707
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	3 cut(s)	590, 680, 707
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	520, 796
BbvI	GCAGC	2 cut(s)	481, 559
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	3 cut(s)	47, 128, 482
BciT130I	CCWGG	3 cut(s)	414, 594, 657
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	6, 530
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	624
BglII	AGATCT	1 cut(s)	669
BisI	GCNGC	2 cut(s)	495, 548
BlsI	GCNGC	2 cut(s)	496, 549
Bme1390I	CCNGG	4 cut(s)	195, 414, 594, 657
Bme18I	GGWCC	3 cut(s)	590, 680, 707
BmgT120I	GGNCC	4 cut(s)	410, 590, 680, 707
BmiI	GGNNCC	2 cut(s)	687, 709
BmrFI	CCNGG	4 cut(s)	195, 414, 594, 657
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	4 cut(s)	435, 504, 554, 686
Bpu10I	CCTNAGC	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 407, 408, 527, 716
Bse1I	ACTGG	3 cut(s)	521, 537, 618
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	3 cut(s)	414, 594, 657
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	100, 640
BseLI	CCNNNNNNNGG	5 cut(s)	91, 407, 408, 527, 716
BseMII	CTCAG	2 cut(s)	313, 729
BseNI	ACTGG	3 cut(s)	521, 537, 618
BseXI	GCAGC	2 cut(s)	481, 559
BshFI	GGCC	5 cut(s)	118, 143, 412, 447, 814
BsiHKAI	GWGCWC	2 cut(s)	520, 796
BsiSI	CCGG	2 cut(s)	195, 683
BslFI	GGGAC	2 cut(s)	630, 693
BslI	CCNNNNNNNGG	5 cut(s)	91, 407, 408, 527, 716
BsmAI	GTCTC	2 cut(s)	6, 530
BsmBI	CGTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	630, 693
BsnI	GGCC	5 cut(s)	118, 143, 412, 447, 814
Bso31I	GGTCTC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	520, 796
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	35, 231, 600, 669
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	5 cut(s)	118, 143, 412, 447, 814
BspCNI	CTCAG	3 cut(s)	312, 730, 822
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	687, 709
BspPI	GGATC	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	521, 537, 618
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	4 cut(s)	35, 231, 600, 669
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	414, 594, 657
Bst4CI	ACNGT	2 cut(s)	151, 680
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	4 cut(s)	299, 673, 738, 809
BstF5I	GGATG	2 cut(s)	100, 640
BstKTI	GATC	4 cut(s)	38, 234, 603, 672
BstMAI	GTCTC	2 cut(s)	6, 530
BstMBI	GATC	4 cut(s)	35, 231, 600, 669
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	3 cut(s)	414, 594, 657
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	4 cut(s)	193, 412, 592, 655
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	2 cut(s)	481, 559
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BsuRI	GGCC	5 cut(s)	118, 143, 412, 447, 814
BtsCI	GGATG	2 cut(s)	100, 640
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	775
Cfr13I	GGNCC	4 cut(s)	410, 590, 680, 707
CpoI	CGGWCCG	1 cut(s)	680
CseI	GACGC	2 cut(s)	269, 539
CspI	CGGWCCG	1 cut(s)	680
CviAII	CATG	2 cut(s)	368, 743
DdeI	CTNAG	4 cut(s)	299, 673, 738, 809
DpnI	GATC	4 cut(s)	37, 233, 602, 671
DpnII	GATC	4 cut(s)	35, 231, 600, 669
EaeI	YGGCCR	2 cut(s)	116, 141
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	3 cut(s)	590, 680, 707
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	412, 592, 655
EcoT22I	ATGCAT	2 cut(s)	427, 754
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	2 cut(s)	371, 746
FaqI	GGGAC	2 cut(s)	630, 693
FatI	CATG	2 cut(s)	367, 742
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	495, 548
FokI	GGATG	2 cut(s)	107, 627
Fsp4HI	GCNGC	2 cut(s)	495, 548
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	495, 548
GsuI	CTGGAG	4 cut(s)	435, 504, 554, 686
HaeIII	GGCC	5 cut(s)	118, 143, 412, 447, 814
HapII	CCGG	2 cut(s)	195, 683
HgaI	GACGC	2 cut(s)	269, 539
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	371, 746
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HindIII	AAGCTT	2 cut(s)	111, 339
HinfI	GANTC	5 cut(s)	67, 87, 121, 134, 356
HpaII	CCGG	2 cut(s)	195, 683
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	125, 530
Hpy188I	TCNGA	3 cut(s)	133, 324, 561
Hpy188III	TCNNGA	2 cut(s)	665, 683
Hpy8I	GTNNAC	2 cut(s)	125, 530
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	3 cut(s)	138, 250, 458
HpyCH4III	ACNGT	2 cut(s)	151, 680
HpyCH4IV	ACGT	2 cut(s)	280, 508
HpyCH4V	TGCA	5 cut(s)	389, 425, 752, 767, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	4 cut(s)	299, 673, 738, 809
HpySE526I	ACGT	2 cut(s)	280, 508
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	371, 746
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	4 cut(s)	35, 231, 600, 669
LmnI	GCTCC	4 cut(s)	491, 523, 685, 799
Lsp1109I	GCAGC	2 cut(s)	481, 559
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	280, 508
MaeIII	GTNAC	4 cut(s)	46, 145, 305, 382
MalI	GATC	4 cut(s)	37, 233, 602, 671
MboI	GATC	4 cut(s)	35, 231, 600, 669
MboII	GAAGA	5 cut(s)	34, 233, 241, 311, 574
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	520, 796
MluCI	AATT	2 cut(s)	72, 255
MlyI	GAGTC	4 cut(s)	76, 130, 143, 350
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	7 cut(s)	70, 91, 281, 325, 410, 475, 548
Mph1103I	ATGCAT	2 cut(s)	427, 754
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	2 cut(s)	195, 683
MspR9I	CCNGG	4 cut(s)	195, 414, 594, 657
MvaI	CCWGG	3 cut(s)	414, 594, 657
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	35, 231, 600, 669
NlaIII	CATG	2 cut(s)	371, 746
NlaIV	GGNNCC	2 cut(s)	687, 709
NmeAIII	GCCGAG	3 cut(s)	144, 267, 338
NmuCI	GTSAC	2 cut(s)	46, 305
NsiI	ATGCAT	2 cut(s)	427, 754
NspI	RCATGY	1 cut(s)	746
PfeI	GAWTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	496, 549
PleI	GAGTC	4 cut(s)	75, 129, 142, 350
PpsI	GAGTC	4 cut(s)	75, 129, 142, 350
Psp6I	CCWGG	3 cut(s)	412, 592, 655
PspGI	CCWGG	3 cut(s)	412, 592, 655
PspN4I	GGNNCC	2 cut(s)	687, 709
PspPI	GGNCC	4 cut(s)	410, 590, 680, 707
PsuI	RGATCY	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	747
Rsr2I	CGGWCCG	1 cut(s)	680
RsrII	CGGWCCG	1 cut(s)	680
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	495, 548
Sau3AI	GATC	4 cut(s)	35, 231, 600, 669
Sau96I	GGNCC	4 cut(s)	410, 590, 680, 707
SchI	GAGTC	4 cut(s)	76, 130, 143, 350
ScrFI	CCNGG	4 cut(s)	195, 414, 594, 657
SduI	GDGCHC	2 cut(s)	520, 796
SfaNI	GCATC	1 cut(s)	729
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	3 cut(s)	590, 680, 707
SmiMI	CAYNNNNRTG	1 cut(s)	747
Sse9I	AATT	2 cut(s)	72, 255
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	193, 412, 592, 655
TaaI	ACNGT	2 cut(s)	151, 680
TaiI	ACGT	2 cut(s)	283, 511
TaqI	TCGA	3 cut(s)	373, 553, 723
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	2 cut(s)	72, 255
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	2 cut(s)	46, 305
TseI	GCWGC	2 cut(s)	494, 547
Tsp45I	GTSAC	2 cut(s)	46, 305
TspDTI	ATGAA	2 cut(s)	35, 440
TspRI	CASTG	1 cut(s)	618
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	590, 680, 707
XceI	RCATGY	1 cut(s)	746
XspI	CTAG	1 cut(s)	266
Zsp2I	ATGCAT	2 cut(s)	427, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.